Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Forward (+)

14587177 .. 14587752

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0156400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGGAGTCTTAGTGGGCCTCAGGTGAGGGAGATAGCATTTGGGCTGGAAAGGGCTGGGTTTCGGTTCTTATGGGCATTGCGAGAACCGCCCAAGTCCAGTGTGTACCTTCCGAGCGACCCCGCAAACGTAGACGAGGTATTGCCAGATGGGTTTTTGGAACGGACATGTAAATTAGGTTTAGTGTGTGGGTGGGTCCCGCAAGTGAAGATTCTGGCCCACCAGGCGATCGGAGGGTTCGTATCGCATTGCGGGTGGAACTCGATTTTGGAGAGCTTGTGGTGTGGGGTACCGATTGCCACGTGGCCTATTTACTCGGAGCAACAAATGAACGCGTTTGAGATGGTGAAGGAATTGGGATTGGCAGTGGAGATTAGGCTGGACTATAGGGAGGGAAGTGATTTGGTATTGGCGGGGGAGGTGGAGAGAAGCATAAAGAGCTTGATGGAGGGTGATCATGTGGTGAGGGCTAGGGTGAAGGACATGAGAGATAAGAGCAGGATGGCATTGATGGAAAATGGGTCTGCATACAAAGCACTAGAAGGTTTAATTGAGGAACTAATGCCCAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

191

Amino Acids

21.29

Weight (kDa)

5.32

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	8 - 130	6.5e-19	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	289
AccB1I	GGYRCC	1 cut(s)	289
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	1 cut(s)	335
AciI	CCGC	5 cut(s)	89, 123, 200, 252, 413
AcvI	CACGTG	1 cut(s)	303
AfaI	GTAC	2 cut(s)	107, 291
AflIII	ACRYGT	2 cut(s)	167, 333
AjnI	CCWGG	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	2 cut(s)	276, 441
AluI	AGCT	2 cut(s)	276, 441
AoxI	GGCC	3 cut(s)	17, 216, 305
Asp718I	GGTACC	1 cut(s)	289
AspS9I	GGNCC	3 cut(s)	17, 196, 217
AsuHPI	GGTGA	5 cut(s)	37, 358, 464, 475, 487
AvaII	GGWCC	1 cut(s)	196
AxyI	CCTNAGG	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	289
BbrPI	CACGTG	1 cut(s)	303
BccI	CCATC	5 cut(s)	143, 337, 439, 496, 505
BciT130I	CCWGG	1 cut(s)	224
BclI	TGATCA	1 cut(s)	454
BfaI	CTAG	2 cut(s)	471, 539
BfmI	CTRYAG	1 cut(s)	385
BglI	GCCNNNNNGGC	1 cut(s)	224
BglII	AGATCT	1 cut(s)	570
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	3 cut(s)	17, 196, 217
BmiI	GGNNCC	3 cut(s)	197, 198, 291
BmrFI	CCNGG	1 cut(s)	224
BsaAI	YACGTR	1 cut(s)	303
BsaXI	ACNNNNNCTCC	5 cut(s)	28, 225, 255, 263, 293
Bse1I	ACTGG	1 cut(s)	99
Bse21I	CCTNAGG	1 cut(s)	21
Bse3DI	GCAATG	2 cut(s)	77, 247
BseBI	CCWGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	507
BseMI	GCAATG	2 cut(s)	77, 247
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	99
BseYI	CCCAGC	1 cut(s)	56
Bsh1236I	CGCG	1 cut(s)	335
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	3 cut(s)	19, 218, 307
BshNI	GGYRCC	1 cut(s)	289
BsiEI	CGRYCG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	3 cut(s)	19, 218, 307
Bsp143I	GATC	3 cut(s)	228, 454, 570
BspACI	CCGC	5 cut(s)	89, 123, 200, 252, 413
BspANI	GGCC	3 cut(s)	19, 218, 307
BspCNI	CTCAG	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	3 cut(s)	197, 198, 291
BspT107I	GGYRCC	1 cut(s)	289
BsrDI	GCAATG	2 cut(s)	77, 247
BsrI	ACTGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	228, 454, 570
Bst2UI	CCWGG	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	303
BstDEI	CTNAG	2 cut(s)	11, 21
BstF5I	GGATG	1 cut(s)	507
BstFNI	CGCG	1 cut(s)	335
BstKTI	GATC	3 cut(s)	231, 457, 573
BstMBI	GATC	3 cut(s)	228, 454, 570
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 224, 438, 533
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	385
BstUI	CGCG	1 cut(s)	335
BstX2I	RGATCY	1 cut(s)	570
BstYI	RGATCY	1 cut(s)	570
Bsu36I	CCTNAGG	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	19, 218, 307
BtsCI	GGATG	1 cut(s)	507
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	106, 372
Cfr13I	GGNCC	3 cut(s)	17, 196, 217
Csp6I	GTAC	2 cut(s)	106, 290
CviAII	CATG	3 cut(s)	168, 458, 484
CviJI	RGCY	9 cut(s)	19, 46, 56, 218, 276, 307, 379, 441, 470
CviKI_1	RGCY	9 cut(s)	19, 46, 56, 218, 276, 307, 379, 441, 470
CviQI	GTAC	2 cut(s)	106, 290
DdeI	CTNAG	2 cut(s)	11, 21
DpnI	GATC	3 cut(s)	230, 456, 572
DpnII	GATC	3 cut(s)	228, 454, 570
Eco47I	GGWCC	1 cut(s)	196
Eco72I	CACGTG	1 cut(s)	303
Eco81I	CCTNAGG	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	3 cut(s)	171, 461, 487
FaiI	YATR	7 cut(s)	73, 169, 387, 434, 459, 485, 529
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	3 cut(s)	167, 457, 483
FauI	CCCGC	4 cut(s)	130, 207, 245, 406
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	1 cut(s)	514
FspBI	CTAG	2 cut(s)	471, 539
GsaI	CCCAGC	1 cut(s)	60
HaeIII	GGCC	3 cut(s)	19, 218, 307
Hin1II	CATG	3 cut(s)	171, 461, 487
HinfI	GANTC	2 cut(s)	7, 211
HphI	GGTGA	5 cut(s)	37, 358, 464, 475, 487
Hpy166II	GTNNAC	2 cut(s)	106, 133
Hpy188I	TCNGA	4 cut(s)	114, 233, 319, 575
Hpy8I	GTNNAC	2 cut(s)	106, 133
HpyAV	CCTTC	4 cut(s)	119, 343, 472, 536
HpyCH4IV	ACGT	2 cut(s)	129, 302
HpyCH4V	TGCA	1 cut(s)	527
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 224, 438, 533
HpyF3I	CTNAG	2 cut(s)	11, 21
HpySE526I	ACGT	2 cut(s)	129, 302
Hsp92II	CATG	3 cut(s)	171, 461, 487
KflI	GGGWCCC	1 cut(s)	196
KpnI	GGTACC	1 cut(s)	293
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	228, 454, 570
LmnI	GCTCC	1 cut(s)	319
MaeI	CTAG	2 cut(s)	471, 539
MaeII	ACGT	2 cut(s)	129, 302
MalI	GATC	3 cut(s)	230, 456, 572
MboI	GATC	3 cut(s)	228, 454, 570
MboII	GAAGA	1 cut(s)	220
MflI	RGATCY	1 cut(s)	570
MluCI	AATT	3 cut(s)	173, 353, 549
MluI	ACGCGT	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	9 cut(s)	21, 30, 130, 227, 385, 412, 442, 459, 547
MseI	TTAA	1 cut(s)	548
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	4 cut(s)	88, 224, 438, 533
NdeII	GATC	3 cut(s)	228, 454, 570
NlaIII	CATG	3 cut(s)	171, 461, 487
NlaIV	GGNNCC	3 cut(s)	197, 198, 291
NspI	RCATGY	1 cut(s)	171
PciI	ACATGT	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	211
Ple19I	CGATCG	1 cut(s)	231
PleI	GAGTC	1 cut(s)	15
PmaCI	CACGTG	1 cut(s)	303
PmlI	CACGTG	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	15
Ppu21I	YACGTR	1 cut(s)	303
PpuMI	RGGWCCY	1 cut(s)	196
PscI	ACATGT	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	222
PspCI	CACGTG	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	3 cut(s)	197, 198, 291
PspPI	GGNCC	3 cut(s)	17, 196, 217
PspPPI	RGGWCCY	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	570
PvuI	CGATCG	1 cut(s)	231
RsaI	GTAC	2 cut(s)	107, 291
RsaNI	GTAC	2 cut(s)	106, 290
SaqAI	TTAA	1 cut(s)	548
Sau3AI	GATC	3 cut(s)	228, 454, 570
Sau96I	GGNCC	3 cut(s)	17, 196, 217
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	224
SfcI	CTRYAG	1 cut(s)	385
SinI	GGWCC	1 cut(s)	196
Sse9I	AATT	3 cut(s)	173, 353, 549
SsiI	CCGC	5 cut(s)	89, 123, 200, 252, 413
SspMI	CTAG	2 cut(s)	471, 539
StyD4I	CCNGG	1 cut(s)	222
TaiI	ACGT	2 cut(s)	132, 305
TaqI	TCGA	1 cut(s)	263
TasI	AATT	3 cut(s)	173, 353, 549
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TscAI	CASTG	2 cut(s)	106, 372
TspDTI	ATGAA	1 cut(s)	344
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	2 cut(s)	106, 372
VpaK11BI	GGWCC	1 cut(s)	196
XceI	RCATGY	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	2 cut(s)	471, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.