Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| FAD_binding_3 | PF01494 | 3 - 36 | 9.3e-06 | FAD binding domain |
| FMO-like | PF00743 | 5 - 315 | 2.7e-20 | Flavin-binding monooxygenase-like |
| Pyr_redox_2 | PF07992 | 5 - 204 | 8.4e-13 | Pyridine nucleotide-disulphide oxidoreductase |
| Pyr_redox_3 | PF13738 | 7 - 204 | 5e-23 | Pyridine nucleotide-disulphide oxidoreductase |
| Lys_Orn_oxgnase | PF13434 | 68 - 199 | 2.4e-13 | L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 23 |
| AciI | CCGC | 1 cut(s) | 70 |
| AclWI | GGATC | 1 cut(s) | 541 |
| AcsI | RAATTY | 5 cut(s) | 541, 716, 724, 741, 1083 |
| AfaI | GTAC | 3 cut(s) | 287, 506, 615 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 649, 758 |
| AflIII | ACRYGT | 1 cut(s) | 616 |
| AgsI | TTSAA | 5 cut(s) | 151, 242, 271, 715, 821 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 506, 538 |
| AleI | CACNNNNGTG | 1 cut(s) | 294 |
| AluBI | AGCT | 1 cut(s) | 154 |
| AluI | AGCT | 1 cut(s) | 154 |
| Alw26I | GTCTC | 1 cut(s) | 296 |
| AlwI | GGATC | 1 cut(s) | 541 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 38 |
| AoxI | GGCC | 1 cut(s) | 761 |
| ApoI | RAATTY | 5 cut(s) | 541, 716, 724, 741, 1083 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 471 |
| AspA2I | CCTAGG | 1 cut(s) | 224 |
| AspLEI | GCGC | 1 cut(s) | 584 |
| AspS9I | GGNCC | 3 cut(s) | 35, 761, 813 |
| AsuC2I | CCSGG | 1 cut(s) | 611 |
| AsuHPI | GGTGA | 2 cut(s) | 422, 431 |
| AvaII | GGWCC | 2 cut(s) | 35, 813 |
| AvrII | CCTAGG | 1 cut(s) | 224 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 243, 276 |
| BauI | CACGAG | 1 cut(s) | 782 |
| BccI | CCATC | 3 cut(s) | 680, 806, 862 |
| BceAI | ACGGC | 2 cut(s) | 478, 595 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 674, 708 |
| BciVI | GTATCC | 2 cut(s) | 271, 445 |
| BcnI | CCSGG | 1 cut(s) | 611 |
| BcoDI | GTCTC | 1 cut(s) | 296 |
| BfaI | CTAG | 3 cut(s) | 47, 225, 362 |
| BfmI | CTRYAG | 1 cut(s) | 933 |
| BfuAI | ACCTGC | 1 cut(s) | 23 |
| BfuI | GTATCC | 2 cut(s) | 271, 445 |
| BlnI | CCTAGG | 1 cut(s) | 224 |
| Bme1390I | CCNGG | 1 cut(s) | 611 |
| Bme18I | GGWCC | 2 cut(s) | 35, 813 |
| BmgT120I | GGNCC | 3 cut(s) | 35, 761, 813 |
| BmiI | GGNNCC | 1 cut(s) | 814 |
| BmrFI | CCNGG | 1 cut(s) | 611 |
| BmsI | GCATC | 2 cut(s) | 907, 1084 |
| BpuEI | CTTGAG | 3 cut(s) | 758, 950, 1048 |
| BpuMI | CCSGG | 1 cut(s) | 611 |
| Bsa29I | ATCGAT | 2 cut(s) | 684, 804 |
| BsaAI | YACGTR | 1 cut(s) | 259 |
| BsaJI | CCNNGG | 3 cut(s) | 224, 508, 643 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 649, 758 |
| Bse1I | ACTGG | 2 cut(s) | 671, 1031 |
| Bse3DI | GCAATG | 1 cut(s) | 690 |
| BseCI | ATCGAT | 2 cut(s) | 684, 804 |
| BseDI | CCNNGG | 3 cut(s) | 224, 508, 643 |
| BseGI | GGATG | 2 cut(s) | 854, 976 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 649, 758 |
| BseMI | GCAATG | 1 cut(s) | 690 |
| BseNI | ACTGG | 2 cut(s) | 671, 1031 |
| BsgI | GTGCAG | 1 cut(s) | 51 |
| BshFI | GGCC | 1 cut(s) | 763 |
| BshVI | ATCGAT | 2 cut(s) | 684, 804 |
| BsiSI | CCGG | 1 cut(s) | 611 |
| BslFI | GGGAC | 1 cut(s) | 826 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 649, 758 |
| BsmAI | GTCTC | 1 cut(s) | 296 |
| BsmFI | GGGAC | 1 cut(s) | 826 |
| BsmI | GAATGC | 1 cut(s) | 1005 |
| BsnI | GGCC | 1 cut(s) | 763 |
| Bsp143I | GATC | 4 cut(s) | 142, 533, 699, 825 |
| BspACI | CCGC | 1 cut(s) | 70 |
| BspANI | GGCC | 1 cut(s) | 763 |
| BspDI | ATCGAT | 2 cut(s) | 684, 804 |
| BspLI | GGNNCC | 1 cut(s) | 814 |
| BspMI | ACCTGC | 1 cut(s) | 23 |
| BspPI | GGATC | 1 cut(s) | 541 |
| BsrDI | GCAATG | 1 cut(s) | 690 |
| BsrI | ACTGG | 2 cut(s) | 671, 1031 |
| BssECI | CCNNGG | 3 cut(s) | 224, 508, 643 |
| BssMI | GATC | 4 cut(s) | 142, 533, 699, 825 |
| BssSI | CACGAG | 1 cut(s) | 782 |
| BssT1I | CCWWGG | 2 cut(s) | 224, 643 |
| Bst2BI | CACGAG | 1 cut(s) | 782 |
| Bst4CI | ACNGT | 3 cut(s) | 509, 952, 1052 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 38, 56 |
| BstBAI | YACGTR | 1 cut(s) | 259 |
| BstDEI | CTNAG | 2 cut(s) | 160, 703 |
| BstDSI | CCRYGG | 1 cut(s) | 508 |
| BstF5I | GGATG | 2 cut(s) | 854, 976 |
| BstHHI | GCGC | 1 cut(s) | 584 |
| BstKTI | GATC | 4 cut(s) | 145, 536, 702, 828 |
| BstMAI | GTCTC | 1 cut(s) | 296 |
| BstMBI | GATC | 4 cut(s) | 142, 533, 699, 825 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 38, 47, 56, 945, 961 |
| BstNSI | RCATGY | 2 cut(s) | 63, 620 |
| BstSCI | CCNGG | 1 cut(s) | 609 |
| BstSFI | CTRYAG | 1 cut(s) | 933 |
| BstSNI | TACGTA | 1 cut(s) | 259 |
| Bsu15I | ATCGAT | 2 cut(s) | 684, 804 |
| BsuI | GTATCC | 2 cut(s) | 271, 445 |
| BsuRI | GGCC | 1 cut(s) | 763 |
| BsuTUI | ATCGAT | 2 cut(s) | 684, 804 |
| BtgI | CCRYGG | 1 cut(s) | 508 |
| BtsCI | GGATG | 2 cut(s) | 854, 976 |
| BtsIMutI | CAGTG | 3 cut(s) | 948, 1024, 1097 |
| BveI | ACCTGC | 1 cut(s) | 23 |
| CaiI | CAGNNNCTG | 1 cut(s) | 38 |
| CfoI | GCGC | 1 cut(s) | 584 |
| Cfr13I | GGNCC | 3 cut(s) | 35, 761, 813 |
| ClaI | ATCGAT | 2 cut(s) | 684, 804 |
| Csp6I | GTAC | 3 cut(s) | 286, 505, 614 |
| CviAII | CATG | 4 cut(s) | 60, 499, 617, 1091 |
| CviJI | RGCY | 7 cut(s) | 154, 609, 763, 794, 900, 939, 964 |
| CviKI_1 | RGCY | 7 cut(s) | 154, 609, 763, 794, 900, 939, 964 |
| CviQI | GTAC | 3 cut(s) | 286, 505, 614 |
| DdeI | CTNAG | 2 cut(s) | 160, 703 |
| DpnI | GATC | 4 cut(s) | 144, 535, 701, 827 |
| DpnII | GATC | 4 cut(s) | 142, 533, 699, 825 |
| Eco105I | TACGTA | 1 cut(s) | 259 |
| Eco130I | CCWWGG | 2 cut(s) | 224, 643 |
| Eco32I | GATATC | 1 cut(s) | 1117 |
| Eco47I | GGWCC | 2 cut(s) | 35, 813 |
| EcoO109I | RGGNCCY | 1 cut(s) | 35 |
| EcoRI | GAATTC | 1 cut(s) | 741 |
| EcoRV | GATATC | 1 cut(s) | 1117 |
| EcoT14I | CCWWGG | 2 cut(s) | 224, 643 |
| ErhI | CCWWGG | 2 cut(s) | 224, 643 |
| FaeI | CATG | 4 cut(s) | 63, 502, 620, 1094 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 143, 175 |
| FaqI | GGGAC | 1 cut(s) | 826 |
| FatI | CATG | 4 cut(s) | 59, 498, 616, 1090 |
| FauNDI | CATATG | 1 cut(s) | 139 |
| FokI | GGATG | 2 cut(s) | 841, 983 |
| FspBI | CTAG | 3 cut(s) | 47, 225, 362 |
| GlaI | GCGC | 1 cut(s) | 583 |
| HaeIII | GGCC | 1 cut(s) | 763 |
| HapII | CCGG | 1 cut(s) | 611 |
| HhaI | GCGC | 1 cut(s) | 584 |
| Hin1II | CATG | 4 cut(s) | 63, 502, 620, 1094 |
| Hin6I | GCGC | 1 cut(s) | 582 |
| HinP1I | GCGC | 1 cut(s) | 582 |
| HincII | GTYRAC | 2 cut(s) | 179, 349 |
| HindII | GTYRAC | 2 cut(s) | 179, 349 |
| HindIII | AAGCTT | 1 cut(s) | 152 |
| HpaII | CCGG | 1 cut(s) | 611 |
| HphI | GGTGA | 2 cut(s) | 422, 431 |
| Hpy166II | GTNNAC | 3 cut(s) | 179, 349, 1073 |
| Hpy188I | TCNGA | 5 cut(s) | 533, 887, 1020, 1036, 1137 |
| Hpy188III | TCNNGA | 4 cut(s) | 434, 537, 546, 829 |
| Hpy8I | GTNNAC | 3 cut(s) | 179, 349, 1073 |
| HpyAV | CCTTC | 3 cut(s) | 277, 416, 866 |
| HpyCH4III | ACNGT | 3 cut(s) | 509, 952, 1052 |
| HpyCH4IV | ACGT | 1 cut(s) | 258 |
| HpyCH4V | TGCA | 3 cut(s) | 32, 59, 1097 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 38, 47, 56, 945, 961 |
| HpyF3I | CTNAG | 2 cut(s) | 160, 703 |
| HpySE526I | ACGT | 1 cut(s) | 258 |
| Hsp92II | CATG | 4 cut(s) | 63, 502, 620, 1094 |
| HspAI | GCGC | 1 cut(s) | 582 |
| Kzo9I | GATC | 4 cut(s) | 142, 533, 699, 825 |
| LweI | GCATC | 2 cut(s) | 907, 1084 |
| MaeI | CTAG | 3 cut(s) | 47, 225, 362 |
| MaeII | ACGT | 1 cut(s) | 258 |
| MaeIII | GTNAC | 1 cut(s) | 833 |
| MalI | GATC | 4 cut(s) | 144, 535, 701, 827 |
| MboI | GATC | 4 cut(s) | 142, 533, 699, 825 |
| MboII | GAAGA | 3 cut(s) | 116, 139, 659 |
| MmeI | TCCRAC | 3 cut(s) | 511, 1014, 1115 |
| MnlI | CCTC | 4 cut(s) | 7, 64, 83, 778 |
| MroXI | GAANNNNTTC | 1 cut(s) | 471 |
| MseI | TTAA | 5 cut(s) | 66, 459, 675, 906, 987 |
| MslI | CAYNNNNRTG | 1 cut(s) | 294 |
| MspI | CCGG | 1 cut(s) | 611 |
| MspR9I | CCNGG | 1 cut(s) | 611 |
| Mva1269I | GAATGC | 1 cut(s) | 1005 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 38, 47, 56, 945, 961 |
| NciI | CCSGG | 1 cut(s) | 611 |
| NdeI | CATATG | 1 cut(s) | 139 |
| NdeII | GATC | 4 cut(s) | 142, 533, 699, 825 |
| NlaIII | CATG | 4 cut(s) | 63, 502, 620, 1094 |
| NlaIV | GGNNCC | 1 cut(s) | 814 |
| NmuCI | GTSAC | 1 cut(s) | 833 |
| NspI | RCATGY | 2 cut(s) | 63, 620 |
| OliI | CACNNNNGTG | 1 cut(s) | 294 |
| PciI | ACATGT | 1 cut(s) | 616 |
| PctI | GAATGC | 1 cut(s) | 1005 |
| PdmI | GAANNNNTTC | 1 cut(s) | 471 |
| Ppu21I | YACGTR | 1 cut(s) | 259 |
| PpuMI | RGGWCCY | 1 cut(s) | 35 |
| PscI | ACATGT | 1 cut(s) | 616 |
| Psp5II | RGGWCCY | 1 cut(s) | 35 |
| PspN4I | GGNNCC | 1 cut(s) | 814 |
| PspPI | GGNCC | 3 cut(s) | 35, 761, 813 |
| PspPPI | RGGWCCY | 1 cut(s) | 35 |
| PstNI | CAGNNNCTG | 1 cut(s) | 38 |
| RsaI | GTAC | 3 cut(s) | 287, 506, 615 |
| RsaNI | GTAC | 3 cut(s) | 286, 505, 614 |
| RseI | CAYNNNNRTG | 1 cut(s) | 294 |
| SaqAI | TTAA | 5 cut(s) | 66, 459, 675, 906, 987 |
| Sau3AI | GATC | 4 cut(s) | 142, 533, 699, 825 |
| Sau96I | GGNCC | 3 cut(s) | 35, 761, 813 |
| ScrFI | CCNGG | 1 cut(s) | 611 |
| SfaNI | GCATC | 2 cut(s) | 907, 1084 |
| SfcI | CTRYAG | 1 cut(s) | 933 |
| SinI | GGWCC | 2 cut(s) | 35, 813 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 294 |
| SmlI | CTYRAG | 3 cut(s) | 773, 965, 1063 |
| SmoI | CTYRAG | 3 cut(s) | 773, 965, 1063 |
| SnaBI | TACGTA | 1 cut(s) | 259 |
| SsiI | CCGC | 1 cut(s) | 70 |
| SspI | AATATT | 1 cut(s) | 927 |
| SspMI | CTAG | 3 cut(s) | 47, 225, 362 |
| StyD4I | CCNGG | 1 cut(s) | 609 |
| StyI | CCWWGG | 2 cut(s) | 224, 643 |
| TaaI | ACNGT | 3 cut(s) | 509, 952, 1052 |
| TaiI | ACGT | 1 cut(s) | 261 |
| TaqI | TCGA | 5 cut(s) | 96, 479, 684, 731, 804 |
| Tru1I | TTAA | 5 cut(s) | 66, 459, 675, 906, 987 |
| Tru9I | TTAA | 5 cut(s) | 66, 459, 675, 906, 987 |
| TscAI | CASTG | 3 cut(s) | 955, 1031, 1104 |
| TseFI | GTSAC | 1 cut(s) | 833 |
| Tsp45I | GTSAC | 1 cut(s) | 833 |
| TspDTI | ATGAA | 5 cut(s) | 464, 504, 515, 734, 894 |
| TspRI | CASTG | 3 cut(s) | 955, 1031, 1104 |
| VpaK11BI | GGWCC | 2 cut(s) | 35, 813 |
| XapI | RAATTY | 5 cut(s) | 541, 716, 724, 741, 1083 |
| XceI | RCATGY | 2 cut(s) | 63, 620 |
| XmaJI | CCTAGG | 1 cut(s) | 224 |
| XmnI | GAANNNNTTC | 1 cut(s) | 471 |
| XspI | CTAG | 3 cut(s) | 47, 225, 362 |