Rorug05G0190700

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
18554263 .. 18562763
8501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0190700.1

Sequence Viewer

Length: 1662 bp
ATGTGCAGCAATAGCAGCAACTACTCGTGCGAGACTGCCAGCCAGACCCTGGCATGGATCAACGCCATCGTCGACTTCATAAAACCCTTCTCTTTCTTGACCAACGCTCACGTCGTCAATTTCTTCAAGGATAGACTGTGGGAGGCGATTGATGAGGAATGGATGGATTGCTTACGGGAGGAAGCAGTCGAAAATCTGCTCCAAATTCCTTGCGGAGTGGTGCAGGATCACTGGCCGGCTTCGCTGAAGGAATTTATTGTTACTTTGAGGTCTCTTGCGCTTCCTCGACAGCAGGCCGACTTGCAGGCGGTATTGCCTGGAATGAGCATGACTTCACTCAACAGTGTTCTTTCGACGGGCATGAATTCGAAGAAGAAACATGAAGTAGAAGTTCTTTCTGCTGTTGTCAATTCAGTTGCAAACACCATTGGTGCTCACGCAATAATTGATGTTGGTGCTGGTCAGGGGTATCTTGCACAAGTACTTTCCTTCCACTACCAACATTCGGTAATTGCAATTGATGCCTGCTCTCACCATGGAAGGGTTACCAATGCACGAGCAGAGCAAATCAAGAAACATTATGCTGCTCAGATGCGTAAATCTGCAGCAGGAAACAGGAGTTTGAATGTGCCTAAGACAGTCACATGCAATGTGATGTCTATTGACATGTTGAAAGCTTTGGCTGATACATCACTGCATAAAGATAATGCCTCTGTACTACAATCTTCCTGCAATGCAGATTGTGAAACATCATTGGTTCTTGCTGGGCTTCATGCTTGTGGAGATCTTTCGGTGACGATGCTCAAGACCTTTATGGAGTGCGAAGAGGTTAAAGCAGTTGTTAGTGTTGGCTGCTGTTACAACCTATTGTCTGAAGAGGGTTTCAACCATGTGGGGTCTCAATGTGGTTTTCCCATGAGTTGTGGTGTTAAAGCTGCTGGCTTGTCACTTGGGAAAAGTTCGCGTGACCTTGCTTGTCAAAGTGCAGAGAGATGGAGTTGTCTGGAAAATGATGCTGGTCTCCATAATTTTGAGTTGCATACTTTCCGCTCTGCTTTTCAGATGGTTTTGAGTCTATATTATCCTGAAGTTGTGATAACCAGTCCATCCATTGGGCGTCAAGGGAAGGCTTTGCGTCGCCAGCAACGAAGGGGCATTCCAGACTCTGCGAATCCGAAAGAAAGCACATGTTCAACATTGCCTCAATTAGCTTGTAATATGAAAGAAAGTGGCTCTCACCTAAGAACCACAAAAATCGAAGAAGATGACAGTTTTGAGATGGAGTTCGAGACGACAGCCATAGGCAATGGACACTCATCTAGTAAGGCCACACAATGTGAGGGGACTCCACACATTAGCAAATATCCACTTTTTAAGAAATACTGTTTATCTGGATTATGTCGCCTGGGTCTTGATCCTCCGAAGGATACAGATCTCCATGGAATATGGAAGAAAGTTCAGCCTTTTGCTGAACTTATTGGACCTTATTGGACTCTTCGAGCTGCTTTCGGGCCTCTTTTGGAAACTTTACTTTTGCTTGATAGATTATTGTTCCTACAAGAGCAAGGCAGTTCAATTGAAGTAGTCATGTTACCTATTTTTGATCCAGCATTATCCCCAAGGAATGTGGCCATTATTGCTAAAAAGTTGACACAAATTTGA

Protein Analysis

553

Amino Acids

60.64

Weight (kDa)

6.32

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_32 PF13679 124 - 292 2e-27 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 49, 1112
AccBSI CCGCTC 1 cut(s) 1050
AccI GTMKAC 1 cut(s) 72
AccII CGCG 1 cut(s) 964
AciI CCGC 3 cut(s) 213, 308, 1048
AclWI GGATC 4 cut(s) 65, 234, 1409, 1598
AcoI YGGCCR 2 cut(s) 233, 1629
AcsI RAATTY 4 cut(s) 204, 251, 364, 1656
AcuI CTGAAG 3 cut(s) 266, 894, 1107
AcyI GRCGYC 1 cut(s) 1117
AdeI CACNNNGTG 1 cut(s) 1337
AfaI GTAC 2 cut(s) 483, 717
AfiI CCNNNNNNNGG 5 cut(s) 49, 54, 505, 541, 1112
AflIII ACRYGT 2 cut(s) 666, 1187
AgsI TTSAA 7 cut(s) 127, 625, 673, 886, 1194, 1575, 1580
AjiI CACGTC 1 cut(s) 112
AjnI CCWGG 3 cut(s) 48, 316, 1404
AluBI AGCT 4 cut(s) 677, 935, 1211, 1502
AluI AGCT 4 cut(s) 677, 935, 1211, 1502
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 5 cut(s) 26, 276, 903, 1025, 1283
AlwI GGATC 4 cut(s) 65, 234, 1409, 1598
AlwNI CAGNNNCTG 2 cut(s) 49, 1166
AoxI GGCC 5 cut(s) 233, 294, 1326, 1511, 1629
ApeKI GCWGC 7 cut(s) 6, 15, 584, 605, 852, 935, 1502
ApoI RAATTY 4 cut(s) 204, 251, 364, 1656
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 1481, 1511
AsuHPI GGTGA 3 cut(s) 524, 805, 1229
AsuII TTCGAA 1 cut(s) 368
AvaII GGWCC 1 cut(s) 1481
BalI TGGCCA 1 cut(s) 1631
BauI CACGAG 2 cut(s) 25, 555
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 7 cut(s) 18, 27, 571, 617, 839, 922, 1489
BccI CCATC 6 cut(s) 74, 157, 987, 1057, 1114, 1273
BciT130I CCWGG 3 cut(s) 50, 318, 1406
BciVI GTATCC 1 cut(s) 1420
BcoDI GTCTC 5 cut(s) 26, 276, 903, 1025, 1283
BfaI CTAG 1 cut(s) 1320
BfmI CTRYAG 1 cut(s) 603
BfuI GTATCC 1 cut(s) 1420
BglII AGATCT 2 cut(s) 784, 1432
BisI GCNGC 7 cut(s) 7, 16, 585, 606, 853, 936, 1503
BlsI GCNGC 7 cut(s) 8, 17, 586, 607, 854, 937, 1504
BmcAI AGTACT 1 cut(s) 483
Bme1390I CCNGG 3 cut(s) 50, 318, 1406
Bme18I GGWCC 1 cut(s) 1481
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 1481, 1511
BmrFI CCNGG 3 cut(s) 50, 318, 1406
BmsI GCATC 4 cut(s) 511, 582, 789, 1003
Bpu14I TTCGAA 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 788
BsaBI GATNNNNATC 1 cut(s) 1431
BsaHI GRCGYC 1 cut(s) 1117
BsaI GGTCTC 3 cut(s) 276, 903, 1025
BsaJI CCNNGG 5 cut(s) 48, 535, 1405, 1438, 1619
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 54, 505, 541, 1112
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 2 cut(s) 236, 1101
Bse3DI GCAATG 4 cut(s) 655, 739, 1196, 1312
Bse8I GATNNNNATC 1 cut(s) 1431
BseBI CCWGG 3 cut(s) 50, 318, 1406
BseDI CCNNGG 5 cut(s) 48, 535, 1405, 1438, 1619
BseGI GGATG 2 cut(s) 168, 1106
BseJI GATNNNNATC 1 cut(s) 1431
BseLI CCNNNNNNNGG 5 cut(s) 49, 54, 505, 541, 1112
BseMI GCAATG 4 cut(s) 655, 739, 1196, 1312
BseMII CTCAG 1 cut(s) 602
BseNI ACTGG 2 cut(s) 236, 1101
BseXI GCAGC 7 cut(s) 18, 27, 571, 617, 839, 922, 1489
BseYI CCCAGC 1 cut(s) 764
BsgI GTGCAG 3 cut(s) 25, 242, 1005
Bsh1236I CGCG 1 cut(s) 964
BshFI GGCC 5 cut(s) 235, 296, 1328, 1513, 1631
BsiHKAI GWGCWC 1 cut(s) 436
BsiSI CCGG 1 cut(s) 236
BslFI GGGAC 1 cut(s) 1357
BslI CCNNNNNNNGG 5 cut(s) 49, 54, 505, 541, 1112
BsmAI GTCTC 5 cut(s) 26, 276, 903, 1025, 1283
BsmBI CGTCTC 1 cut(s) 1283
BsmFI GGGAC 1 cut(s) 1357
BsmI GAATGC 1 cut(s) 1155
BsnI GGCC 5 cut(s) 235, 296, 1328, 1513, 1631
Bso31I GGTCTC 3 cut(s) 276, 903, 1025
Bsp119I TTCGAA 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 6 cut(s) 57, 226, 784, 1414, 1432, 1603
Bsp19I CCATGG 2 cut(s) 535, 1438
BspACI CCGC 3 cut(s) 213, 308, 1048
BspANI GGCC 5 cut(s) 235, 296, 1328, 1513, 1631
BspCNI CTCAG 1 cut(s) 601
BspFNI CGCG 1 cut(s) 964
BspMAI CTGCAG 1 cut(s) 607
BspPI GGATC 4 cut(s) 65, 234, 1409, 1598
BspT104I TTCGAA 1 cut(s) 368
BspTNI GGTCTC 3 cut(s) 276, 903, 1025
BsrBI CCGCTC 1 cut(s) 1050
BsrDI GCAATG 4 cut(s) 655, 739, 1196, 1312
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 2 cut(s) 236, 1101
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 5 cut(s) 48, 535, 1405, 1438, 1619
BssMI GATC 6 cut(s) 57, 226, 784, 1414, 1432, 1603
BssNI GRCGYC 1 cut(s) 1117
BssSI CACGAG 2 cut(s) 25, 555
BssT1I CCWWGG 3 cut(s) 535, 1438, 1619
Bst2BI CACGAG 2 cut(s) 25, 555
Bst2UI CCWGG 3 cut(s) 50, 318, 1406
Bst4CI ACNGT 5 cut(s) 138, 344, 640, 1271, 1385
Bst6I CTCTTC 3 cut(s) 819, 870, 1500
BstACI GRCGYC 1 cut(s) 1117
BstAPI GCANNNNNTGC 1 cut(s) 521
BstBI TTCGAA 1 cut(s) 368
BstC8I GCNNGC 7 cut(s) 40, 237, 294, 306, 526, 940, 1142
BstDEI CTNAG 3 cut(s) 588, 633, 1241
BstDSI CCRYGG 2 cut(s) 535, 1438
BstEII GGTNACC 1 cut(s) 544
BstF5I GGATG 2 cut(s) 168, 1106
BstFNI CGCG 1 cut(s) 964
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 6 cut(s) 60, 229, 787, 1417, 1435, 1606
BstMAI GTCTC 5 cut(s) 26, 276, 903, 1025, 1283
BstMBI GATC 6 cut(s) 57, 226, 784, 1414, 1432, 1603
BstMWI GCNNNNNNNGC 6 cut(s) 12, 15, 241, 521, 1141, 1637
BstNI CCWGG 3 cut(s) 50, 318, 1406
BstNSI RCATGY 3 cut(s) 648, 670, 1191
BstPI GGTNACC 1 cut(s) 544
BstSCI CCNGG 3 cut(s) 48, 316, 1404
BstSFI CTRYAG 1 cut(s) 603
BstUI CGCG 1 cut(s) 964
BstV1I GCAGC 7 cut(s) 18, 27, 571, 617, 839, 922, 1489
BstX2I RGATCY 2 cut(s) 784, 1432
BstYI RGATCY 2 cut(s) 784, 1432
BsuI GTATCC 1 cut(s) 1420
BsuRI GGCC 5 cut(s) 235, 296, 1328, 1513, 1631
BtgI CCRYGG 2 cut(s) 535, 1438
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 168, 1106
BtsI GCAGTG 1 cut(s) 692
BtsIMutI CAGTG 3 cut(s) 229, 349, 692
Cac8I GCNNGC 7 cut(s) 40, 237, 294, 306, 526, 940, 1142
CaiI CAGNNNCTG 2 cut(s) 49, 1166
CfoI GCGC 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 2 cut(s) 1481, 1511
CseI GACGC 2 cut(s) 1106, 1124
Csp6I GTAC 2 cut(s) 482, 716
CspCI CAANNNNNGTGG 2 cut(s) 1608, 1643
CviQI GTAC 2 cut(s) 482, 716
DdeI CTNAG 3 cut(s) 588, 633, 1241
DpnI GATC 6 cut(s) 59, 228, 786, 1416, 1434, 1605
DpnII GATC 6 cut(s) 57, 226, 784, 1414, 1432, 1603
DraIII CACNNNGTG 1 cut(s) 1337
EaeI YGGCCR 2 cut(s) 233, 1629
Eam1104I CTCTTC 3 cut(s) 819, 870, 1500
EarI CTCTTC 3 cut(s) 819, 870, 1500
Eco130I CCWWGG 3 cut(s) 535, 1438, 1619
Eco31I GGTCTC 3 cut(s) 276, 903, 1025
Eco47I GGWCC 1 cut(s) 1481
Eco57I CTGAAG 3 cut(s) 266, 894, 1107
Eco91I GGTNACC 1 cut(s) 544
EcoO65I GGTNACC 1 cut(s) 544
EcoRI GAATTC 1 cut(s) 364
EcoRII CCWGG 3 cut(s) 48, 316, 1404
EcoT14I CCWWGG 3 cut(s) 535, 1438, 1619
ErhI CCWWGG 3 cut(s) 535, 1438, 1619
Esp3I CGTCTC 1 cut(s) 1283
FaqI GGGAC 1 cut(s) 1357
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 7 cut(s) 7, 16, 585, 606, 853, 936, 1503
FokI GGATG 2 cut(s) 175, 1093
Fsp4HI GCNGC 7 cut(s) 7, 16, 585, 606, 853, 936, 1503
FspBI CTAG 1 cut(s) 1320
GlaI GCGC 1 cut(s) 279
GluI GCNGC 7 cut(s) 7, 16, 585, 606, 853, 936, 1503
GsaI CCCAGC 1 cut(s) 768
HaeIII GGCC 5 cut(s) 235, 296, 1328, 1513, 1631
HapII CCGG 1 cut(s) 236
HgaI GACGC 2 cut(s) 1106, 1124
HhaI GCGC 1 cut(s) 280
Hin1I GRCGYC 1 cut(s) 1117
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HincII GTYRAC 2 cut(s) 73, 1650
HindII GTYRAC 2 cut(s) 73, 1650
HindIII AAGCTT 1 cut(s) 675
HinfI GANTC 5 cut(s) 1072, 1163, 1171, 1345, 1492
HpaII CCGG 1 cut(s) 236
HphI GGTGA 3 cut(s) 524, 805, 1229
Hpy166II GTNNAC 2 cut(s) 73, 1650
Hpy188I TCNGA 5 cut(s) 591, 874, 1062, 1176, 1422
Hpy188III TCNNGA 9 cut(s) 97, 571, 805, 1004, 1085, 1160, 1288, 1392, 1412
Hpy8I GTNNAC 2 cut(s) 73, 1650
Hpy99I CGWCG 4 cut(s) 74, 116, 358, 1140
HpyAV CCTTC 7 cut(s) 97, 241, 499, 534, 1120, 1143, 1417
HpyCH4III ACNGT 5 cut(s) 138, 344, 640, 1271, 1385
HpyCH4IV ACGT 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 15, 241, 521, 1141, 1637
HpyF3I CTNAG 3 cut(s) 588, 633, 1241
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 1117
HspAI GCGC 1 cut(s) 278
KroI GCCGGC 1 cut(s) 235
KroNI GCCGGC 1 cut(s) 237
Kzo9I GATC 6 cut(s) 57, 226, 784, 1414, 1432, 1603
LmnI GCTCC 1 cut(s) 204
Lsp1109I GCAGC 7 cut(s) 18, 27, 571, 617, 839, 922, 1489
LweI GCATC 4 cut(s) 511, 582, 789, 1003
MaeI CTAG 1 cut(s) 1320
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 8 cut(s) 259, 544, 640, 793, 857, 945, 965, 1590
MalI GATC 6 cut(s) 59, 228, 786, 1416, 1434, 1605
MbiI CCGCTC 1 cut(s) 1050
MboI GATC 6 cut(s) 57, 226, 784, 1414, 1432, 1603
MfeI CAATTG 2 cut(s) 516, 1575
MflI RGATCY 2 cut(s) 784, 1432
MhlI GDGCHC 1 cut(s) 436
MlsI TGGCCA 1 cut(s) 1631
MluNI TGGCCA 1 cut(s) 1631
MlyI GAGTC 4 cut(s) 1081, 1157, 1339, 1486
Mox20I TGGCCA 1 cut(s) 1631
MroNI GCCGGC 1 cut(s) 235
MscI TGGCCA 1 cut(s) 1631
MseI TTAA 3 cut(s) 831, 930, 1374
MslI CAYNNNNRTG 1 cut(s) 777
Msp20I TGGCCA 1 cut(s) 1631
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 3 cut(s) 50, 318, 1406
MunI CAATTG 2 cut(s) 516, 1575
Mva1269I GAATGC 1 cut(s) 1155
MvaI CCWGG 3 cut(s) 50, 318, 1406
MvnI CGCG 1 cut(s) 964
MwoI GCNNNNNNNGC 6 cut(s) 12, 15, 241, 521, 1141, 1637
NaeI GCCGGC 1 cut(s) 237
NcoI CCATGG 2 cut(s) 535, 1438
NdeII GATC 6 cut(s) 57, 226, 784, 1414, 1432, 1603
NgoMIV GCCGGC 1 cut(s) 235
NmuCI GTSAC 4 cut(s) 640, 793, 945, 965
NspI RCATGY 3 cut(s) 648, 670, 1191
NspV TTCGAA 1 cut(s) 368
PciI ACATGT 2 cut(s) 666, 1187
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 111, 1144
PctI GAATGC 1 cut(s) 1155
PdiI GCCGGC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 1171
PflMI CCANNNNNTGG 2 cut(s) 49, 1112
PkrI GCNGC 7 cut(s) 8, 17, 586, 607, 854, 937, 1504
PleI GAGTC 4 cut(s) 1080, 1157, 1339, 1486
PpsI GAGTC 4 cut(s) 1080, 1157, 1339, 1486
PscI ACATGT 2 cut(s) 666, 1187
Psp6I CCWGG 3 cut(s) 48, 316, 1404
PspEI GGTNACC 1 cut(s) 544
PspFI CCCAGC 1 cut(s) 764
PspGI CCWGG 3 cut(s) 48, 316, 1404
PspPI GGNCC 2 cut(s) 1481, 1511
PstI CTGCAG 1 cut(s) 607
PstNI CAGNNNCTG 2 cut(s) 49, 1166
PsuI RGATCY 2 cut(s) 784, 1432
RsaI GTAC 2 cut(s) 483, 717
RsaNI GTAC 2 cut(s) 482, 716
RseI CAYNNNNRTG 1 cut(s) 777
SalI GTCGAC 1 cut(s) 71
SaqAI TTAA 3 cut(s) 831, 930, 1374
SatI GCNGC 7 cut(s) 7, 16, 585, 606, 853, 936, 1503
Sau3AI GATC 6 cut(s) 57, 226, 784, 1414, 1432, 1603
Sau96I GGNCC 2 cut(s) 1481, 1511
ScaI AGTACT 1 cut(s) 483
SchI GAGTC 4 cut(s) 1081, 1157, 1339, 1486
ScrFI CCNGG 3 cut(s) 50, 318, 1406
SduI GDGCHC 1 cut(s) 436
SfaNI GCATC 4 cut(s) 511, 582, 789, 1003
SfcI CTRYAG 1 cut(s) 603
SfuI TTCGAA 1 cut(s) 368
SinI GGWCC 1 cut(s) 1481
SmiMI CAYNNNNRTG 1 cut(s) 777
SmlI CTYRAG 1 cut(s) 803
SmoI CTYRAG 1 cut(s) 803
SsiI CCGC 3 cut(s) 213, 308, 1048
SspMI CTAG 1 cut(s) 1320
StyD4I CCNGG 3 cut(s) 48, 316, 1404
StyI CCWWGG 3 cut(s) 535, 1438, 1619
TaaI ACNGT 5 cut(s) 138, 344, 640, 1271, 1385
TaiI ACGT 1 cut(s) 114
TaqI TCGA 8 cut(s) 72, 189, 286, 353, 368, 1257, 1287, 1498
TatI WGTACW 2 cut(s) 481, 715
TfiI GAWTC 1 cut(s) 1171
Tru1I TTAA 3 cut(s) 831, 930, 1374
Tru9I TTAA 3 cut(s) 831, 930, 1374
TscAI CASTG 3 cut(s) 236, 349, 699
TseFI GTSAC 4 cut(s) 640, 793, 945, 965
TseI GCWGC 7 cut(s) 6, 15, 584, 605, 852, 935, 1502
Tsp45I GTSAC 4 cut(s) 640, 793, 945, 965
TspDTI ATGAA 5 cut(s) 67, 377, 396, 761, 1235
TspRI CASTG 3 cut(s) 236, 349, 699
Van91I CCANNNNNTGG 2 cut(s) 49, 1112
VpaK11BI GGWCC 1 cut(s) 1481
XapI RAATTY 4 cut(s) 204, 251, 364, 1656
XceI RCATGY 3 cut(s) 648, 670, 1191
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 1 cut(s) 1320
ZrmI AGTACT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.