AT4G22100

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
11707370 .. 11709932
2563 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G22100.1

Sequence Viewer

Length: 1524 bp
ATGGAACTGACTTTGTCTCTGTTAACCATTTTTCTGCTTTTCTTTGCATTGTCTGGGAGATGCAGCGACAAGAACGACTTCCCCGAGGGCTTCATTTTTGGATCCGCCACTTCTGCTTATCAGTGGGAAGGAGCTTTTGATGAAGATGGAAGAAAACCTAGCGTCTGGGATACTTTCCTTCACACTCGTAACCTAAGTAACGGAGACATAACAAGTGATGGGTACCATAAGTACAAGGAGGATGTGAAGCTCATGGTGGAAACTGGCTTAGATGCCTTCAGATTCTCCATTTCTTGGTCTAGGCTTATACCGAATGGAAGAGGTCCTGTTAATCCCAAGGGTCTACAGTTCTATAAGAACTTCATTCAAGAACTTGTAAGCCATGGAATCGAACCACATGTGACACTGTTCCACTACGATCATCCTCAGTATCTTGAAGATGAATATGGAGGATGGATCAACCGCAGAATCATCCAAGACTTTACAGCTTATGCAAATGTTTGCTTCAGAGAGTTTGGGCATCACGTCAAATTCTGGACCACGATCAACGAGGCTAATATATTCACTATTGGAGGATACAATGATGGGATCACACCGCCTGGTCGTTGCTCCTCACCGGGTAGAAACTGCTCATCAGGGAACTCTTCAACTGAACCATATATCGTAGGCCATAACTTGCTTCTTGCGCACGCCTCTGCTTCAAGACTGTATAAGCAAAAGTACAAGGATATGCAAGGAGGTTCTGTGGGATTTAGCTTATTCTCCCTAGGGTTTACACCTTCTACAAGCTCCAAGGATGATGACATTGCAGTTCAAAGAGCCAAAGATTTCTACTTCGGCTGGATGCTTGAGCCTTTTATATTCGGTGACTATCCCGATGAAATGAAAAGAACTGTTGGATCAAGACTGCCAGTTTTCTCAAAGGAAGAATCAGAACAAGTTAAAGGCTCATCTGATTTCATAGGAATCATTCACTATCTTGCAGCTTCGGTCACAAGCATCAAGATCAAACCTTCTATTTCAGGAAACCCGGATTTTTATTCAGACATGGGTGTATCTATGACATGGACAGTCCTTGGGAATTTTTCAGCTTTCGAGTATGCTGTTGCTCCATGGGCTATGGAAAGTGTCCTTGAGTATATAAAGCAAAGCTATGGCAATCCTCCTATCTACATTCTTGAAAATGGTACACCGATGAAGCAAGATTTGCAGCTGCAACAAAAGGACACACCAAGGATTGAGTATTTACATGCTTATATTGCTGCTGTTCTCAAATCTATTAGGAATGGATCAGACACGAGAGGTTACTTCATATGGTCATTTATGGATTTATACGAGTTAGTGAAGGGATATGAGTTTAGTTTTGGATTATACTCTGTGAATTTCAGTGATCCTCATCGTACGAGATCTCCAAAACTCTCTGCTCATTGGTACTCTGCTTTTCTCAAGGGCAACACCACTTTTCTTGGTTCTCAAGGCATCATGCAAATGCAGAGCAACTTTTCTTCTTCAGCTTCTTCGTAG

Protein Analysis

507

Amino Acids

57.31

Weight (kDa)

5.98

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 24 - 485 2e-140 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 687
Acc65I GGTACC 1 cut(s) 222
AccB1I GGYRCC 1 cut(s) 222
AccB7I CCANNNNNTGG 1 cut(s) 294
AccI GTMKAC 1 cut(s) 343
AciI CCGC 3 cut(s) 105, 463, 596
AclWI GGATC 7 cut(s) 96, 109, 464, 596, 907, 1297, 1385
AcsI RAATTY 3 cut(s) 530, 1081, 1381
AcuI CTGAAG 3 cut(s) 262, 490, 1494
AfaI GTAC 6 cut(s) 224, 233, 722, 1189, 1402, 1433
AfiI CCNNNNNNNGG 1 cut(s) 294
AflIII ACRYGT 1 cut(s) 397
AgsI TTSAA 6 cut(s) 368, 437, 648, 702, 815, 1181
AjiI CACGTC 1 cut(s) 526
AjnI CCWGG 1 cut(s) 598
Alw26I GTCTC 2 cut(s) 21, 198
AlwI GGATC 7 cut(s) 96, 109, 464, 596, 907, 1297, 1385
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 1 cut(s) 667
ApeKI GCWGC 5 cut(s) 63, 983, 1210, 1213, 1262
ApoI RAATTY 3 cut(s) 530, 1081, 1381
Asp700I GAANNNNTTC 1 cut(s) 77
Asp718I GGTACC 1 cut(s) 222
AspA2I CCTAGG 1 cut(s) 766
AspLEI GCGC 1 cut(s) 688
AspS9I GGNCC 2 cut(s) 323, 537
AsuC2I CCSGG 2 cut(s) 618, 1031
AsuHPI GGTGA 2 cut(s) 606, 878
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 2 cut(s) 323, 537
AvrII CCTAGG 1 cut(s) 766
BamHI GGATCC 1 cut(s) 101
BanI GGYRCC 1 cut(s) 222
BauI CACGAG 1 cut(s) 1297
BbvI GCAGC 5 cut(s) 75, 995, 1200, 1222, 1249
BccI CCATC 4 cut(s) 140, 212, 447, 578
BciT130I CCWGG 1 cut(s) 600
BciVI GTATCC 2 cut(s) 163, 569
BcnI CCSGG 2 cut(s) 618, 1031
BcoDI GTCTC 2 cut(s) 21, 198
BfaI CTAG 3 cut(s) 159, 300, 767
BfmI CTRYAG 1 cut(s) 344
BfuI GTATCC 2 cut(s) 163, 569
BglII AGATCT 1 cut(s) 1406
BisI GCNGC 5 cut(s) 64, 984, 1211, 1214, 1263
BlnI CCTAGG 1 cut(s) 766
BlsI GCNGC 5 cut(s) 65, 985, 1212, 1215, 1264
Bme1390I CCNGG 3 cut(s) 600, 618, 1031
Bme18I GGWCC 2 cut(s) 323, 537
BmeT110I CYCGRG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 526
BmgT120I GGNCC 2 cut(s) 323, 537
BmiI GGNNCC 2 cut(s) 103, 224
BmrFI CCNGG 3 cut(s) 600, 618, 1031
BmsI GCATC 6 cut(s) 50, 262, 529, 834, 1008, 1488
BpuEI CTTGAG 4 cut(s) 869, 1154, 1430, 1458
BpuMI CCSGG 2 cut(s) 618, 1031
BsaBI GATNNNNATC 1 cut(s) 1395
BsaJI CCNNGG 8 cut(s) 84, 336, 382, 766, 792, 1075, 1112, 1232
BsaXI ACNNNNNCTCC 4 cut(s) 729, 759, 1393, 1423
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse1I ACTGG 2 cut(s) 268, 911
Bse3DI GCAATG 1 cut(s) 804
Bse8I GATNNNNATC 1 cut(s) 1395
BseBI CCWGG 1 cut(s) 600
BseDI CCNNGG 8 cut(s) 84, 336, 382, 766, 792, 1075, 1112, 1232
BseGI GGATG 6 cut(s) 247, 421, 458, 471, 802, 849
BseJI GATNNNNATC 1 cut(s) 1395
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMI GCAATG 1 cut(s) 804
BseMII CTCAG 1 cut(s) 440
BseNI ACTGG 2 cut(s) 268, 911
BseRI GAGGAG 1 cut(s) 601
BseXI GCAGC 5 cut(s) 75, 995, 1200, 1222, 1249
BshFI GGCC 1 cut(s) 669
BshNI GGYRCC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 2 cut(s) 617, 1031
BsiWI CGTACG 1 cut(s) 1400
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 2 cut(s) 21, 198
BsnI GGCC 1 cut(s) 669
BsoBI CYCGRG 1 cut(s) 83
Bsp19I CCATGG 2 cut(s) 382, 1112
BspACI CCGC 3 cut(s) 105, 463, 596
BspANI GGCC 1 cut(s) 669
BspCNI CTCAG 1 cut(s) 439
BspLI GGNNCC 2 cut(s) 103, 224
BspPI GGATC 7 cut(s) 96, 109, 464, 596, 907, 1297, 1385
BspT107I GGYRCC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 804
BsrI ACTGG 2 cut(s) 268, 911
BssECI CCNNGG 8 cut(s) 84, 336, 382, 766, 792, 1075, 1112, 1232
BssSI CACGAG 1 cut(s) 1297
BssT1I CCWWGG 7 cut(s) 336, 382, 766, 792, 1075, 1112, 1232
Bst2BI CACGAG 1 cut(s) 1297
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 5 cut(s) 348, 408, 708, 895, 1072
Bst6I CTCTTC 2 cut(s) 313, 649
BstAPI GCANNNNNTGC 1 cut(s) 1207
BstC8I GCNNGC 1 cut(s) 690
BstDEI CTNAG 3 cut(s) 194, 268, 426
BstDSI CCRYGG 2 cut(s) 382, 1112
BstF5I GGATG 6 cut(s) 247, 421, 458, 471, 802, 849
BstHHI GCGC 1 cut(s) 688
BstMAI GTCTC 2 cut(s) 21, 198
BstMWI GCNNNNNNNGC 5 cut(s) 113, 685, 1115, 1207, 1259
BstNI CCWGG 1 cut(s) 600
BstNSI RCATGY 2 cut(s) 401, 1253
BstSCI CCNGG 3 cut(s) 598, 616, 1029
BstSFI CTRYAG 1 cut(s) 344
BstV1I GCAGC 5 cut(s) 75, 995, 1200, 1222, 1249
BstX2I RGATCY 2 cut(s) 101, 1406
BstYI RGATCY 2 cut(s) 101, 1406
BsuI GTATCC 2 cut(s) 163, 569
BsuRI GGCC 1 cut(s) 669
BtgI CCRYGG 2 cut(s) 382, 1112
BtrI CACGTC 1 cut(s) 526
BtsCI GGATG 6 cut(s) 247, 421, 458, 471, 802, 849
BtsIMutI CAGTG 3 cut(s) 128, 404, 1393
Cac8I GCNNGC 1 cut(s) 690
CfoI GCGC 1 cut(s) 688
Cfr13I GGNCC 2 cut(s) 323, 537
CseI GACGC 1 cut(s) 151
Csp6I GTAC 6 cut(s) 223, 232, 721, 1188, 1401, 1432
CspCI CAANNNNNGTGG 2 cut(s) 1447, 1482
CviAII CATG 8 cut(s) 253, 383, 398, 1048, 1065, 1113, 1250, 1483
CviQI GTAC 6 cut(s) 223, 232, 721, 1188, 1401, 1432
DdeI CTNAG 3 cut(s) 194, 268, 426
Eam1104I CTCTTC 2 cut(s) 313, 649
EarI CTCTTC 2 cut(s) 313, 649
EciI GGCGGA 1 cut(s) 94
Eco130I CCWWGG 7 cut(s) 336, 382, 766, 792, 1075, 1112, 1232
Eco47I GGWCC 2 cut(s) 323, 537
Eco57I CTGAAG 3 cut(s) 262, 490, 1494
Eco88I CYCGRG 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 598
EcoT14I CCWWGG 7 cut(s) 336, 382, 766, 792, 1075, 1112, 1232
ErhI CCWWGG 7 cut(s) 336, 382, 766, 792, 1075, 1112, 1232
FaeI CATG 8 cut(s) 256, 386, 401, 1051, 1068, 1116, 1253, 1486
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FatI CATG 8 cut(s) 252, 382, 397, 1047, 1064, 1112, 1249, 1482
FauNDI CATATG 1 cut(s) 1313
FblI GTMKAC 1 cut(s) 343
Fnu4HI GCNGC 5 cut(s) 64, 984, 1211, 1214, 1263
FokI GGATG 6 cut(s) 254, 408, 458, 465, 809, 856
Fsp4HI GCNGC 5 cut(s) 64, 984, 1211, 1214, 1263
FspBI CTAG 3 cut(s) 159, 300, 767
FspI TGCGCA 1 cut(s) 687
GlaI GCGC 1 cut(s) 687
GluI GCNGC 5 cut(s) 64, 984, 1211, 1214, 1263
HaeIII GGCC 1 cut(s) 669
HapII CCGG 2 cut(s) 617, 1031
HgaI GACGC 1 cut(s) 151
HhaI GCGC 1 cut(s) 688
Hin1II CATG 8 cut(s) 256, 386, 401, 1051, 1068, 1116, 1253, 1486
Hin6I GCGC 1 cut(s) 686
HinP1I GCGC 1 cut(s) 686
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 5 cut(s) 282, 387, 468, 929, 966
HpaI GTTAAC 1 cut(s) 24
HpaII CCGG 2 cut(s) 617, 1031
HphI GGTGA 2 cut(s) 606, 878
Hpy166II GTNNAC 4 cut(s) 24, 344, 774, 1190
Hpy188I TCNGA 6 cut(s) 281, 509, 934, 955, 1045, 1294
Hpy188III TCNNGA 9 cut(s) 368, 434, 535, 702, 875, 903, 1003, 1023, 1178
Hpy8I GTNNAC 4 cut(s) 24, 344, 774, 1190
HpyAV CCTTC 6 cut(s) 122, 188, 286, 789, 1023, 1339
HpyCH4III ACNGT 5 cut(s) 348, 408, 708, 895, 1072
HpyCH4IV ACGT 1 cut(s) 525
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 685, 1115, 1207, 1259
HpyF3I CTNAG 3 cut(s) 194, 268, 426
HpySE526I ACGT 1 cut(s) 525
Hsp92II CATG 8 cut(s) 256, 386, 401, 1051, 1068, 1116, 1253, 1486
HspAI GCGC 1 cut(s) 686
KpnI GGTACC 1 cut(s) 226
KspAI GTTAAC 1 cut(s) 24
LmnI GCTCC 4 cut(s) 131, 614, 794, 1114
Lsp1109I GCAGC 5 cut(s) 75, 995, 1200, 1222, 1249
LweI GCATC 6 cut(s) 50, 262, 529, 834, 1008, 1488
MaeI CTAG 3 cut(s) 159, 300, 767
MaeII ACGT 1 cut(s) 525
MaeIII GTNAC 6 cut(s) 188, 197, 400, 866, 991, 1304
MboII GAAGA 9 cut(s) 155, 162, 330, 449, 636, 938, 1497, 1500, 1509
MflI RGATCY 2 cut(s) 101, 1406
MluCI AATT 3 cut(s) 530, 1081, 1381
MmeI TCCRAC 1 cut(s) 877
MroXI GAANNNNTTC 1 cut(s) 77
MseI TTAA 3 cut(s) 23, 330, 942
MslI CAYNNNNRTG 1 cut(s) 1487
MspA1I CMGCKG 1 cut(s) 1213
MspI CCGG 2 cut(s) 617, 1031
MspR9I CCNGG 3 cut(s) 600, 618, 1031
MvaI CCWGG 1 cut(s) 600
MwoI GCNNNNNNNGC 5 cut(s) 113, 685, 1115, 1207, 1259
NciI CCSGG 2 cut(s) 618, 1031
NcoI CCATGG 2 cut(s) 382, 1112
NdeI CATATG 1 cut(s) 1313
NlaIII CATG 8 cut(s) 256, 386, 401, 1051, 1068, 1116, 1253, 1486
NlaIV GGNNCC 2 cut(s) 103, 224
NmuCI GTSAC 3 cut(s) 400, 866, 991
NsbI TGCGCA 1 cut(s) 687
NspI RCATGY 2 cut(s) 401, 1253
PciI ACATGT 1 cut(s) 397
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 77
PfeI GAWTC 5 cut(s) 282, 387, 468, 929, 966
Pfl23II CGTACG 1 cut(s) 1400
PflFI GACNNNGTC 1 cut(s) 13
PflMI CCANNNNNTGG 1 cut(s) 294
PkrI GCNGC 5 cut(s) 65, 985, 1212, 1215, 1264
PpuMI RGGWCCY 1 cut(s) 323
PscI ACATGT 1 cut(s) 397
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 598
PspGI CCWGG 1 cut(s) 598
PspLI CGTACG 1 cut(s) 1400
PspN4I GGNNCC 2 cut(s) 103, 224
PspPI GGNCC 2 cut(s) 323, 537
PspPPI RGGWCCY 1 cut(s) 323
PsuI RGATCY 2 cut(s) 101, 1406
PsyI GACNNNGTC 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 1213
RsaI GTAC 6 cut(s) 224, 233, 722, 1189, 1402, 1433
RsaNI GTAC 6 cut(s) 223, 232, 721, 1188, 1401, 1432
RseI CAYNNNNRTG 1 cut(s) 1487
SaqAI TTAA 3 cut(s) 23, 330, 942
SatI GCNGC 5 cut(s) 64, 984, 1211, 1214, 1263
Sau96I GGNCC 2 cut(s) 323, 537
ScrFI CCNGG 3 cut(s) 600, 618, 1031
SfaNI GCATC 6 cut(s) 50, 262, 529, 834, 1008, 1488
SfcI CTRYAG 1 cut(s) 344
SinI GGWCC 2 cut(s) 323, 537
SmiMI CAYNNNNRTG 1 cut(s) 1487
SmlI CTYRAG 4 cut(s) 848, 1133, 1445, 1473
SmoI CTYRAG 4 cut(s) 848, 1133, 1445, 1473
Sse9I AATT 3 cut(s) 530, 1081, 1381
SsiI CCGC 3 cut(s) 105, 463, 596
SspMI CTAG 3 cut(s) 159, 300, 767
StyD4I CCNGG 3 cut(s) 598, 616, 1029
StyI CCWWGG 7 cut(s) 336, 382, 766, 792, 1075, 1112, 1232
TaaI ACNGT 5 cut(s) 348, 408, 708, 895, 1072
TaiI ACGT 1 cut(s) 528
TaqI TCGA 2 cut(s) 390, 1095
TaqII GACCGA 1 cut(s) 979
TasI AATT 3 cut(s) 530, 1081, 1381
TatI WGTACW 2 cut(s) 231, 720
TfiI GAWTC 5 cut(s) 282, 387, 468, 929, 966
Tru1I TTAA 3 cut(s) 23, 330, 942
Tru9I TTAA 3 cut(s) 23, 330, 942
TscAI CASTG 3 cut(s) 128, 411, 1393
TseFI GTSAC 3 cut(s) 400, 866, 991
TseI GCWGC 5 cut(s) 63, 983, 1210, 1213, 1262
Tsp45I GTSAC 3 cut(s) 400, 866, 991
TspDTI ATGAA 9 cut(s) 82, 156, 352, 456, 894, 899, 949, 1211, 1300
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 3 cut(s) 128, 411, 1393
Tth111I GACNNNGTC 1 cut(s) 13
Van91I CCANNNNNTGG 1 cut(s) 294
VpaK11BI GGWCC 2 cut(s) 323, 537
XapI RAATTY 3 cut(s) 530, 1081, 1381
XceI RCATGY 2 cut(s) 401, 1253
XmaJI CCTAGG 1 cut(s) 766
XmiI GTMKAC 1 cut(s) 343
XmnI GAANNNNTTC 1 cut(s) 77
XspI CTAG 3 cut(s) 159, 300, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.