Rh3BG326300

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000569
Physical Location & Seq
Reverse (-)
33921027 .. 33921471
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG326300.1

Sequence Viewer

Length: 360 bp
ATGAATGAGCCAAATGTATTTGTACTCGGTGGTTATGATATTGGATTCCTTCCACCACAACGATGCTCAGCTCCATTTGGTTTTAATTGCTCGAGGGGTAACTCCTCAATTGGGCCATACTTGGCAATTCATAATATCTTGTTATCTCATGCAACAGCTGCTGCACTCTACAACCTACCAGCACAAGCAGCGTGGGTTTATAGGCATCAATCTATTTTCCCATTGGTTTATTCCTCAAACCAAAACCCATCAAGACCAAGTTGCTGCTCAAAGAGCTCTCGACTTCTATTTTGGTTGGGTTATGCATCCTTTGGTGTTTGGAGAGTACCCTCAAGTAATGAAAAAGAATGCAGGCTCTAG

Protein Analysis

119

Amino Acids

13.19

Weight (kDa)

9.17

Isoelectric Point (pI)

62.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 24, 327
AfiI CCNNNNNNNGG 1 cut(s) 111
AluBI AGCT 3 cut(s) 71, 158, 276
AluI AGCT 3 cut(s) 71, 158, 276
Alw21I GWGCWC 1 cut(s) 278
AlwNI CAGNNNCTG 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 91
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 4 cut(s) 158, 161, 188, 264
ArsI GACNNNNNNTTYG 2 cut(s) 273, 305
AspS9I GGNCC 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 91
BanII GRGCYC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 278
BbvI GCAGC 4 cut(s) 145, 148, 200, 251
BccI CCATC 1 cut(s) 256
BfaI CTAG 1 cut(s) 358
BisI GCNGC 4 cut(s) 159, 162, 189, 265
BlpI GCTNAGC 1 cut(s) 67
BlsI GCNGC 4 cut(s) 160, 163, 190, 266
BmeT110I CYCGRG 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 113
BmsI GCATC 3 cut(s) 53, 214, 314
Bpu1102I GCTNAGC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 305
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 4 cut(s) 145, 148, 200, 251
BsgI GTGCAG 1 cut(s) 147
BshFI GGCC 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 111
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 278
Bsp1720I GCTNAGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 115
BspCNI CTCAG 1 cut(s) 80
BstAPI GCANNNNNTGC 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 353
BstDEI CTNAG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 305
BstMWI GCNNNNNNNGC 3 cut(s) 158, 188, 273
BstV1I GCAGC 4 cut(s) 145, 148, 200, 251
BsuRI GGCC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 305
Cac8I GCNNGC 1 cut(s) 353
CaiI CAGNNNCTG 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 2 cut(s) 23, 326
CspCI CAANNNNNGTGG 2 cut(s) 173, 208
CviAII CATG 1 cut(s) 149
CviJI RGCY 6 cut(s) 10, 71, 115, 158, 276, 355
CviKI_1 RGCY 6 cut(s) 10, 71, 115, 158, 276, 355
CviQI GTAC 2 cut(s) 23, 326
DdeI CTNAG 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 278
Eco53kI GAGCTC 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 276
EcoT22I ATGCAT 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 278
FaeI CATG 1 cut(s) 152
FaiI YATR 6 cut(s) 36, 118, 132, 150, 201, 303
FatI CATG 1 cut(s) 148
Fnu4HI GCNGC 4 cut(s) 159, 162, 189, 265
FokI GGATG 1 cut(s) 292
FriOI GRGCYC 1 cut(s) 278
Fsp4HI GCNGC 4 cut(s) 159, 162, 189, 265
FspBI CTAG 1 cut(s) 358
GluI GCNGC 4 cut(s) 159, 162, 189, 265
HaeIII GGCC 1 cut(s) 115
Hin1II CATG 1 cut(s) 152
HinfI GANTC 1 cut(s) 45
Hpy188III TCNNGA 2 cut(s) 252, 279
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 4 cut(s) 152, 164, 305, 351
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 188, 273
HpyF3I CTNAG 1 cut(s) 67
Hsp92II CATG 1 cut(s) 152
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 2 cut(s) 192, 337
Lsp1109I GCAGC 4 cut(s) 145, 148, 200, 251
LweI GCATC 3 cut(s) 53, 214, 314
MaeI CTAG 1 cut(s) 358
MaeIII GTNAC 1 cut(s) 98
MfeI CAATTG 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 3 cut(s) 85, 108, 126
MnlI CCTC 4 cut(s) 87, 115, 244, 340
Mph1103I ATGCAT 1 cut(s) 307
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 61
MspA1I CMGCKG 1 cut(s) 158
MunI CAATTG 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 353
MwoI GCNNNNNNNGC 3 cut(s) 158, 188, 273
NlaIII CATG 1 cut(s) 152
NsiI ATGCAT 1 cut(s) 307
PaeR7I CTCGAG 1 cut(s) 91
PctI GAATGC 1 cut(s) 353
PfeI GAWTC 1 cut(s) 45
PkrI GCNGC 4 cut(s) 160, 163, 190, 266
Psp124BI GAGCTC 1 cut(s) 278
PspPI GGNCC 1 cut(s) 113
PspXI VCTCGAGB 1 cut(s) 91
PstNI CAGNNNCTG 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 2 cut(s) 24, 327
RsaNI GTAC 2 cut(s) 23, 326
RseI CAYNNNNRTG 1 cut(s) 61
SacI GAGCTC 1 cut(s) 278
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 4 cut(s) 159, 162, 189, 265
Sau96I GGNCC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 278
SetI ASST 4 cut(s) 73, 160, 177, 278
SfaNI GCATC 3 cut(s) 53, 214, 314
Sfr274I CTCGAG 1 cut(s) 91
SlaI CTCGAG 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 61
SmlI CTYRAG 2 cut(s) 91, 331
SmoI CTYRAG 2 cut(s) 91, 331
Sse9I AATT 3 cut(s) 85, 108, 126
SspMI CTAG 1 cut(s) 358
SstI GAGCTC 1 cut(s) 278
TaqI TCGA 2 cut(s) 92, 280
TasI AATT 3 cut(s) 85, 108, 126
TatI WGTACW 1 cut(s) 22
TfiI GAWTC 1 cut(s) 45
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseI GCWGC 4 cut(s) 158, 161, 188, 264
TspDTI ATGAA 3 cut(s) 17, 119, 354
XhoI CTCGAG 1 cut(s) 91
XspI CTAG 1 cut(s) 358
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.