Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000569

Physical Location & Seq

Genomic Coordinates Reverse (-)

11206414 .. 11214715

Gene Structure 8302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g12280.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCTGAGAGTTTCATTTTTTCTGTGTTTTCTTCTCATAAAGCTTTCTTTATGCGCTGATAAATATAGCAGAGATGACTTCCCTCCAGGCTTCGTGTTTGGTGCTTCCTCCTCTGCTTATCAGGTGGAAGGTGCTGCGGACCAAGACGGAAGGACCCCAAGCATCTTGGACACATATGCTCATGCTGGTAATTATGATGGAGCTACTGGAGATGTAGTGTGTGATCAATATCACAAATACAAGGAAGATGTCCAACTAATGGTGGATACTGGTTTGGAGGCATATAGATTTTCCATCTCATGGTCCAGACTTATCCCAAATGGAAGAGGACCTGTCAATCCGAAGGGTGTACAATATTACAACAATCTTATTGATGAACTGATCAGCCATGGAATCGAACCACATGTTACTTTACACCAAAGTGATCTCCCGCAGGCACTTGATGATGAGTATGGAGGATGGGTAAGTCGAAAAATTGTAAAACACTTCACTGCATATGCAGATGCGTGCTTCAAAAATTTTGGGGATAGAGTTTTGCATTGGACTACTATGAATGAGCCTAATGTTTTTACACTTGGGGGTTATGATGTTAGATTTCTTCCACCACACGATGTTCAGCTCCATTTGGTGTCAATTGTTCTAGGGGTAATTCCTCAACAGAGCCATACATGGCAGCTCATGCATCAGCTGCTAGATTATGCATCAAGTTGTATATCAATACCAGTATTAATATATGCAGGACAAGCAGCATGGATATATAGGAATCAATGTTTTTTCCTATTGGTTTGTTCCTCTAACAAAAACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko00460 ko00500 ko00940 ko01100 ko01110 ko01120 map00230 map00460 map00500 map00940 map01100 map01110 map01120

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

270

Amino Acids

30.37

Weight (kDa)

5.7

Isoelectric Point (pI)

30.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G60090 AT1G60090 AT1G60270 AT1G60270 AT4G22100 AT5G16580
fragaria_vesca	FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420
malus_domestica	MD11G1150300.v1.1 MD11G1150400.v1.1 MD11G1150500.v1.1 MD11G1150800.v1.1 MD11G1151000.v1.1 MD11G1151200.v1.1
prunus_persica	Prupe.6G156200_v2.0.a1 Prupe.6G156200_v2.0.a1 Prupe.6G156400_v2.0.a1 Prupe.6G156500_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1
pyrus_communis	pycom11g12280 pycom11g12290 pycom11g12310
rosa_chinensis	RchiOBHm_Chr5g0041221 RchiOBHm_Chr5g0041231 RchiOBHm_Chr5g0041251 RchiOBHm_Chr7g0234981
rosa_laevigata	RLG00000001188 RLG00000034038 RLG00000034040 RLG00000034043
rosa_multiflora	Rmu_co8273911.1_g000001 Rmu_sc0003502.1_g000015 Rmu_sc0005650.1_g000002 Rmu_sc0007703.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039370 Rroxscaffold_1G00039400 Rroxscaffold_3G00226380
rosa_rugosa	Rorug05G0190700 Rorug05G0190800 Rorug07G0286800
rosa_samantha	Rh3BG326300 Rh5AG276800 Rh5AG277000 Rh5BG281700 Rh5BG281800 Rh5CG285800 Rh5CG313900 Rh5CG314000 Rh5DG289900 Rh5DG290100 Rh5DG290300 Rh7AG441700 Rh7DG431300
rosa_wichuraiana	Rw5G026030 Rw5G026040 Rw7G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	259, 300
AciI	CCGC	2 cut(s)	137, 431
AcsI	RAATTY	1 cut(s)	517
AfaI	GTAC	1 cut(s)	351
AfiI	CCNNNNNNNGG	2 cut(s)	259, 300
AflIII	ACRYGT	1 cut(s)	403
AgsI	TTSAA	1 cut(s)	514
AjnI	CCWGG	1 cut(s)	85
AleI	CACNNNNGTG	1 cut(s)	420
AluBI	AGCT	5 cut(s)	43, 203, 619, 676, 688
AluI	AGCT	5 cut(s)	43, 203, 619, 676, 688
ApeKI	GCWGC	4 cut(s)	134, 673, 688, 746
ApoI	RAATTY	1 cut(s)	517
AseI	ATTAAT	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	4 cut(s)	139, 153, 303, 329
AvaII	GGWCC	4 cut(s)	139, 153, 303, 329
BbvI	GCAGC	4 cut(s)	121, 675, 685, 758
BccI	CCATC	3 cut(s)	191, 302, 453
BciT130I	CCWGG	1 cut(s)	87
BciVI	GTATCC	1 cut(s)	259
BclI	TGATCA	2 cut(s)	223, 381
BfaI	CTAG	2 cut(s)	641, 692
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	4 cut(s)	135, 674, 689, 747
BlsI	GCNGC	4 cut(s)	136, 675, 690, 748
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	4 cut(s)	139, 153, 303, 329
BmgT120I	GGNCC	4 cut(s)	139, 153, 303, 329
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	4 cut(s)	171, 493, 691, 710
BpmI	CTGGAG	2 cut(s)	69, 228
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	388
BsaXI	ACNNNNNCTCC	4 cut(s)	201, 231, 447, 477
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 300
Bse1I	ACTGG	3 cut(s)	211, 274, 722
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	1 cut(s)	464
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	259, 300
BseNI	ACTGG	3 cut(s)	211, 274, 722
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	4 cut(s)	121, 675, 685, 758
BslI	CCNNNNNNNGG	2 cut(s)	259, 300
Bsp1407I	TGTACA	1 cut(s)	349
Bsp143I	GATC	3 cut(s)	223, 381, 424
Bsp19I	CCATGG	1 cut(s)	388
BspACI	CCGC	2 cut(s)	137, 431
BspLI	GGNNCC	1 cut(s)	155
BsrGI	TGTACA	1 cut(s)	349
BsrI	ACTGG	3 cut(s)	211, 274, 722
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	3 cut(s)	223, 381, 424
BssT1I	CCWWGG	1 cut(s)	388
Bst2UI	CCWGG	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	319
BstAPI	GCANNNNNTGC	2 cut(s)	679, 688
BstAUI	TGTACA	1 cut(s)	349
BstC8I	GCNNGC	2 cut(s)	435, 508
BstDEI	CTNAG	1 cut(s)	5
BstDSI	CCRYGG	1 cut(s)	388
BstF5I	GGATG	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	3 cut(s)	226, 384, 427
BstMBI	GATC	3 cut(s)	223, 381, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	679, 688, 743
BstNI	CCWGG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	85
BstV1I	GCAGC	4 cut(s)	121, 675, 685, 758
BsuI	GTATCC	1 cut(s)	259
BtgI	CCRYGG	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	464
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	2 cut(s)	435, 508
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	4 cut(s)	139, 153, 303, 329
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	7 cut(s)	182, 300, 389, 404, 669, 679, 750
CviJI	RGCY	9 cut(s)	43, 90, 203, 387, 559, 619, 663, 676, 688
CviKI_1	RGCY	9 cut(s)	43, 90, 203, 387, 559, 619, 663, 676, 688
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	1 cut(s)	5
DpnI	GATC	3 cut(s)	225, 383, 426
DpnII	GATC	3 cut(s)	223, 381, 424
Eam1104I	CTCTTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	388
Eco47I	GGWCC	4 cut(s)	139, 153, 303, 329
EcoO109I	RGGNCCY	2 cut(s)	153, 329
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	388
EcoT22I	ATGCAT	2 cut(s)	684, 703
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	7 cut(s)	185, 303, 392, 407, 672, 682, 753
FatI	CATG	7 cut(s)	181, 299, 388, 403, 668, 678, 749
FauI	CCCGC	1 cut(s)	438
FauNDI	CATATG	2 cut(s)	175, 496
FbaI	TGATCA	2 cut(s)	223, 381
Fnu4HI	GCNGC	4 cut(s)	135, 674, 689, 747
FokI	GGATG	1 cut(s)	471
Fsp4HI	GCNGC	4 cut(s)	135, 674, 689, 747
FspBI	CTAG	2 cut(s)	641, 692
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	4 cut(s)	135, 674, 689, 747
GsuI	CTGGAG	2 cut(s)	69, 228
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	7 cut(s)	185, 303, 392, 407, 672, 682, 753
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	2 cut(s)	393, 763
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	1 cut(s)	306
Hpy8I	GTNNAC	1 cut(s)	350
HpyAV	CCTTC	3 cut(s)	122, 144, 337
HpyCH4V	TGCA	6 cut(s)	494, 500, 538, 682, 701, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	679, 688, 743
HpyF3I	CTNAG	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	185, 303, 392, 407, 672, 682, 753
HspAI	GCGC	1 cut(s)	54
Ksp22I	TGATCA	2 cut(s)	223, 381
Kzo9I	GATC	3 cut(s)	223, 381, 424
LmnI	GCTCC	2 cut(s)	200, 624
Lsp1109I	GCAGC	4 cut(s)	121, 675, 685, 758
LweI	GCATC	4 cut(s)	171, 493, 691, 710
MaeI	CTAG	2 cut(s)	641, 692
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	3 cut(s)	225, 383, 426
MboI	GATC	3 cut(s)	223, 381, 424
MboII	GAAGA	4 cut(s)	23, 257, 336, 590
MfeI	CAATTG	1 cut(s)	633
MluCI	AATT	5 cut(s)	190, 474, 517, 633, 648
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	8 cut(s)	93, 118, 121, 271, 320, 449, 663, 802
Mph1103I	ATGCAT	2 cut(s)	684, 703
MseI	TTAA	1 cut(s)	728
MslI	CAYNNNNRTG	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	688
MspR9I	CCNGG	1 cut(s)	87
MunI	CAATTG	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	3 cut(s)	679, 688, 743
NcoI	CCATGG	1 cut(s)	388
NdeI	CATATG	2 cut(s)	175, 496
NdeII	GATC	3 cut(s)	223, 381, 424
NlaIII	CATG	7 cut(s)	185, 303, 392, 407, 672, 682, 753
NlaIV	GGNNCC	1 cut(s)	155
NsiI	ATGCAT	2 cut(s)	684, 703
NspI	RCATGY	1 cut(s)	407
OliI	CACNNNNGTG	1 cut(s)	420
PciI	ACATGT	1 cut(s)	403
PfeI	GAWTC	2 cut(s)	393, 763
PflMI	CCANNNNNTGG	2 cut(s)	259, 300
PkrI	GCNGC	4 cut(s)	136, 675, 690, 748
PpuMI	RGGWCCY	2 cut(s)	153, 329
PscI	ACATGT	1 cut(s)	403
PshBI	ATTAAT	1 cut(s)	728
Psp5II	RGGWCCY	2 cut(s)	153, 329
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	4 cut(s)	139, 153, 303, 329
PspPPI	RGGWCCY	2 cut(s)	153, 329
PvuII	CAGCTG	1 cut(s)	688
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	728
SatI	GCNGC	4 cut(s)	135, 674, 689, 747
Sau3AI	GATC	3 cut(s)	223, 381, 424
Sau96I	GGNCC	4 cut(s)	139, 153, 303, 329
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	8 cut(s)	45, 126, 133, 205, 334, 621, 678, 690
SfaNI	GCATC	4 cut(s)	171, 493, 691, 710
SinI	GGWCC	4 cut(s)	139, 153, 303, 329
SmiMI	CAYNNNNRTG	1 cut(s)	420
Sse9I	AATT	5 cut(s)	190, 474, 517, 633, 648
SsiI	CCGC	2 cut(s)	137, 431
SspI	AATATT	1 cut(s)	356
SspMI	CTAG	2 cut(s)	641, 692
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	388
TaqI	TCGA	2 cut(s)	396, 469
TasI	AATT	5 cut(s)	190, 474, 517, 633, 648
TatI	WGTACW	1 cut(s)	349
TfiI	GAWTC	2 cut(s)	393, 763
Tru1I	TTAA	1 cut(s)	728
Tru9I	TTAA	1 cut(s)	728
TscAI	CASTG	1 cut(s)	496
TseI	GCWGC	4 cut(s)	134, 673, 688, 746
TspDTI	ATGAA	2 cut(s)	390, 566
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	496
Van91I	CCANNNNNTGG	2 cut(s)	259, 300
VpaK11BI	GGWCC	4 cut(s)	139, 153, 303, 329
VspI	ATTAAT	1 cut(s)	728
XapI	RAATTY	1 cut(s)	517
XceI	RCATGY	1 cut(s)	407
XspI	CTAG	2 cut(s)	641, 692
Zsp2I	ATGCAT	2 cut(s)	684, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.