Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000569

Physical Location & Seq

Genomic Coordinates Reverse (-)

14284783 .. 14286807

Gene Structure 2025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1150500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCTGAGAGTTTCATTTTTTCTGTGTTTTCTTCTCATAAAACTTTCTTTATGCGTTGATAAATATAGCAGAGATGACTTCCCTCCAGGCTTCGTGTTTGGTGCTTCCTCCTCTGCTTATCAGGTGGAAGATGCTGCAGACCAAGACGGAAGGACCCCAAGCATCTTGGACACATATGCCCATGCCGGTAATTGTGATGGAGCTACTGGAGATGTAGCGTGTGATCAGTATCACAAATACAAGGAAGATGTCCAACTAATGGTGGATACTGGTTTGGAGGCATATAGATTTTCCATCTCATGGTCAAGACTTATCCCAAGTATGCATGATCAACGAATTGTAACTCAGATTAAACAAAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko00460 ko00500 ko00940 ko01100 ko01110 ko01120 map00230 map00460 map00500 map00940 map01100 map01110 map01120

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

122

Amino Acids

13.65

Weight (kDa)

5.47

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	24 - 110	6.4e-31	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G60090 AT1G60090 AT1G60270 AT1G60270 AT4G22100 AT5G16580
fragaria_vesca	FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420
malus_domestica	MD11G1150300.v1.1 MD11G1150400.v1.1 MD11G1150500.v1.1 MD11G1150800.v1.1 MD11G1151000.v1.1 MD11G1151200.v1.1
prunus_persica	Prupe.6G156200_v2.0.a1 Prupe.6G156200_v2.0.a1 Prupe.6G156400_v2.0.a1 Prupe.6G156500_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1
pyrus_communis	pycom11g12280 pycom11g12290 pycom11g12310
rosa_chinensis	RchiOBHm_Chr5g0041221 RchiOBHm_Chr5g0041231 RchiOBHm_Chr5g0041251 RchiOBHm_Chr7g0234981
rosa_laevigata	RLG00000001188 RLG00000034038 RLG00000034040 RLG00000034043
rosa_multiflora	Rmu_co8273911.1_g000001 Rmu_sc0003502.1_g000015 Rmu_sc0005650.1_g000002 Rmu_sc0007703.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039370 Rroxscaffold_1G00039400 Rroxscaffold_3G00226380
rosa_rugosa	Rorug05G0190700 Rorug05G0190800 Rorug07G0286800
rosa_samantha	Rh3BG326300 Rh5AG276800 Rh5AG277000 Rh5BG281700 Rh5BG281800 Rh5CG285800 Rh5CG313900 Rh5CG314000 Rh5DG289900 Rh5DG290100 Rh5DG290300 Rh7AG441700 Rh7DG431300
rosa_wichuraiana	Rw5G026030 Rw5G026040 Rw7G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	259, 300
AfiI	CCNNNNNNNGG	2 cut(s)	259, 300
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
ApeKI	GCWGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	2 cut(s)	191, 302
BciT130I	CCWGG	1 cut(s)	87
BciVI	GTATCC	1 cut(s)	259
BclI	TGATCA	2 cut(s)	223, 328
BfmI	CTRYAG	1 cut(s)	135
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	2 cut(s)	121, 171
BpmI	CTGGAG	2 cut(s)	69, 228
BsaBI	GATNNNNATC	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 300
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	211, 274
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	87
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	259, 300
BseMII	CTCAG	1 cut(s)	359
BseNI	ACTGG	2 cut(s)	211, 274
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	186
BslI	CCNNNNNNNGG	2 cut(s)	259, 300
Bsp143I	GATC	2 cut(s)	223, 328
BspCNI	CTCAG	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	155
BspMAI	CTGCAG	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	211, 274
BssAI	RCCGGY	1 cut(s)	185
BssMI	GATC	2 cut(s)	223, 328
Bst2UI	CCWGG	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	5, 345
BstKTI	GATC	2 cut(s)	226, 331
BstMBI	GATC	2 cut(s)	223, 328
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	121
BsuI	GTATCC	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	153
CviAII	CATG	3 cut(s)	182, 300, 326
CviJI	RGCY	2 cut(s)	90, 203
CviKI_1	RGCY	2 cut(s)	90, 203
DdeI	CTNAG	2 cut(s)	5, 345
DpnI	GATC	2 cut(s)	225, 330
DpnII	GATC	2 cut(s)	223, 328
Eco47I	GGWCC	1 cut(s)	153
EcoO109I	RGGNCCY	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	327
FaeI	CATG	3 cut(s)	185, 303, 329
FatI	CATG	3 cut(s)	181, 299, 325
FauNDI	CATATG	1 cut(s)	175
FbaI	TGATCA	2 cut(s)	223, 328
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	135
GsuI	CTGGAG	2 cut(s)	69, 228
HapII	CCGG	1 cut(s)	186
Hin1II	CATG	3 cut(s)	185, 303, 329
HpaII	CCGG	1 cut(s)	186
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	1 cut(s)	306
HpyAV	CCTTC	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	137, 325
HpyF3I	CTNAG	2 cut(s)	5, 345
Hsp92II	CATG	3 cut(s)	185, 303, 329
Ksp22I	TGATCA	2 cut(s)	223, 328
Kzo9I	GATC	2 cut(s)	223, 328
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	6 cut(s)	72, 99, 107, 192, 199, 255
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	2 cut(s)	121, 171
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	2 cut(s)	225, 330
MboI	GATC	2 cut(s)	223, 328
MboII	GAAGA	3 cut(s)	23, 140, 257
MluCI	AATT	2 cut(s)	190, 336
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	4 cut(s)	93, 118, 121, 271
Mph1103I	ATGCAT	1 cut(s)	327
MseI	TTAA	1 cut(s)	351
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	2 cut(s)	223, 328
NlaIII	CATG	3 cut(s)	185, 303, 329
NlaIV	GGNNCC	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	327
PflMI	CCANNNNNTGG	2 cut(s)	259, 300
PkrI	GCNGC	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	223, 328
Sau96I	GGNCC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	2 cut(s)	126, 205
SfaNI	GCATC	2 cut(s)	121, 171
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	153
Sse9I	AATT	2 cut(s)	190, 336
StyD4I	CCNGG	1 cut(s)	85
TasI	AATT	2 cut(s)	190, 336
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TseI	GCWGC	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	162
Van91I	CCANNNNNTGG	2 cut(s)	259, 300
VpaK11BI	GGWCC	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.