AT1G60090

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
22155559 .. 22158272
2714 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G60090.1

Sequence Viewer

Length: 1539 bp
ATGGAACAGATTTTGGCTCTGTTTGCCATTTTTCTTGCTTTTGCTTTCTCCGGGAAATGCAGCGACGTTTTCAGCAGATCTGACTACCCTGAGGGATTCGTCTTTGGAGCCGGCACTTCTGCTTATCAGTGGGAAGGAGCTGCTGCAGAAGACGGAAGGAAACCTAGCCTGTGGGACACTCTTTGTCACTCTCGTGACCAAGGTAACGGAGATATAGCATGTGATGGGTATCACAAGTACAAGGATGATGTGAAGTTGATGGTGGACACTAACTTAGATGCTTTCAGATTCTCCATCTCTTGGTCTAGGCTAATACCTAATGGAAGAGGGCCTGTTAACCAAAAGGGTCTACAGTTCTACAAGAACCTCATCCAAGAGTTAGTAAGCCACGGAATTGAACCACATGTTACACTCTACCACTATGATCATCCTCAGTCTCTGGAGGATGAATATGGAGGATGGCTCAACCACAGAATGATCAAAGACTTTACTACTTATGCAGATGTTTGCTTCAGAGAGTTTGGGAACCATGTCAAACTATGGACCACGATCAACGAGGCTAATATATTCTCTATAGGAGGTTACAACGATGGGGATACACCGCCTGGTCGTTGTTCCAAACCGAGCAAAAACTGTTCTTCAGGGAACTCTTCCATTGAACCATATATTGTAGGCCATAATTTGTTGCTTGCGCACGCCTCTGTTTCAAGACGATACAAACAAAAATACAAGGATAAGCAGGGAGGTTCCATAGGATTTAGCTTATTCATATTAGGGCTTATTCCTACTACAAGCTCCAAGGATGATGCCACTGCAACCCAAAGAGCCCAAGATTTCTACGTCGGCTGGTTCCTTAGACCTCTTTTATTTGGAGACTATCCTGATACAATGAAAAGAACCATTGGATCAAGACTGCCAGTTTTCTCTGAGAAAGAATCAGAACAAGTTAAAGGCTCATGTGACTTTGTAGGAGTCATACACTATCATGCGGCTTCTGTCACTAACATCAAATCCAAACCTTCTCTGTCCGGAAACCCGGATTTCTACTCATACATGGAGACAGATTTTGGAAAAAGTTTAGATTTTCAGTATGCTAATACTCCATGGGCTATGGAAGTTGTGCTGGAGTATATAAAGCAGAGCTATGGAAATCCTCCTGTCTACATTCTTGAGAGTGCTAAATTCACTTTCCAATGGCAACAAATAGGTACACCGATGAAGCAAGATTCGCAGCTGAAACAGAAGGATATACCAAGGGTGGAATACTTGCATGCCTACATTGGTGGTGTGCTCAAATCCATAAGGAATGGATCAGACACGAGAGGCTACTTCGTATGGTCATTTATGGATTTATACGAGCTTCTAGGGGGATATGAGGTTGGTTTTGGGTTGTACACTGTCAATTTCAGCGATCCTCATCGCAAGAGATCTCCCAAACTCTCTGCTTATTGGTACTCTGATTTTCTCAAGGGTGAATCTGCCTTTCTTGATTCCCAAGGCATCAAGGAATTGCAGAGCAAATACTCTTCTTCCTTCTAG

Protein Analysis

512

Amino Acids

57.97

Weight (kDa)

6.4

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 27 - 490 4.6e-131 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 693
AccB7I CCANNNNNTGG 1 cut(s) 300
AccI GTMKAC 2 cut(s) 349, 1161
AccIII TCCGGA 1 cut(s) 1028
AciI CCGC 2 cut(s) 602, 989
AclWI GGATC 3 cut(s) 913, 1318, 1406
AcsI RAATTY 1 cut(s) 1181
AcuI CTGAAG 2 cut(s) 496, 624
AfaI GTAC 4 cut(s) 239, 1210, 1394, 1454
AfiI CCNNNNNNNGG 1 cut(s) 300
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 3 cut(s) 398, 659, 708
AjnI CCWGG 1 cut(s) 604
AleI CACNNNNGTG 1 cut(s) 192
AluBI AGCT 6 cut(s) 140, 762, 795, 1143, 1234, 1360
AluI AGCT 6 cut(s) 140, 762, 795, 1143, 1234, 1360
Alw21I GWGCWC 1 cut(s) 1293
Alw26I GTCTC 3 cut(s) 441, 867, 1052
AlwI GGATC 3 cut(s) 913, 1318, 1406
AlwNI CAGNNNCTG 1 cut(s) 439
Aor13HI TCCGGA 1 cut(s) 1028
AoxI GGCC 2 cut(s) 329, 673
ApeKI GCWGC 4 cut(s) 60, 140, 143, 1231
ApoI RAATTY 1 cut(s) 1181
AspLEI GCGC 1 cut(s) 694
AspS9I GGNCC 2 cut(s) 329, 543
AsuC2I CCSGG 2 cut(s) 52, 1037
AsuHPI GGTGA 1 cut(s) 1484
AvaII GGWCC 1 cut(s) 543
AxyI CCTNAGG 1 cut(s) 90
BanII GRGCYC 1 cut(s) 829
BauI CACGAG 2 cut(s) 192, 1318
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 1293
BbvI GCAGC 4 cut(s) 72, 127, 130, 1243
BccI CCATC 5 cut(s) 218, 253, 302, 453, 584
BciT130I CCWGG 1 cut(s) 606
BciVI GTATCC 1 cut(s) 589
BclI TGATCA 2 cut(s) 424, 477
BcnI CCSGG 2 cut(s) 52, 1037
BcoDI GTCTC 3 cut(s) 441, 867, 1052
BfaI CTAG 4 cut(s) 165, 306, 1364, 1537
BfmI CTRYAG 3 cut(s) 144, 350, 573
BfuI GTATCC 1 cut(s) 589
BglII AGATCT 2 cut(s) 77, 1427
BisI GCNGC 5 cut(s) 61, 141, 144, 990, 1232
BlsI GCNGC 5 cut(s) 62, 142, 145, 991, 1233
Bme1390I CCNGG 3 cut(s) 52, 606, 1037
Bme18I GGWCC 1 cut(s) 543
BmgT120I GGNCC 2 cut(s) 329, 543
BmiI GGNNCC 4 cut(s) 109, 527, 748, 851
BmrFI CCNGG 3 cut(s) 52, 606, 1037
BmsI GCATC 3 cut(s) 268, 796, 1509
BpiI GAAGAC 1 cut(s) 156
BplI GAGNNNNNCTC 2 cut(s) 447, 479
BpmI CTGGAG 2 cut(s) 461, 1145
BpuEI CTTGAG 2 cut(s) 1190, 1451
BpuMI CCSGG 2 cut(s) 52, 1037
BsaBI GATNNNNATC 2 cut(s) 228, 1416
BsaJI CCNNGG 6 cut(s) 199, 388, 798, 1103, 1253, 1495
BsaWI WCCGGW 1 cut(s) 1028
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 917
Bse21I CCTNAGG 1 cut(s) 90
Bse8I GATNNNNATC 2 cut(s) 228, 1416
BseAI TCCGGA 1 cut(s) 1028
BseBI CCWGG 1 cut(s) 606
BseDI CCNNGG 6 cut(s) 199, 388, 798, 1103, 1253, 1495
BseGI GGATG 6 cut(s) 250, 369, 427, 451, 464, 808
BseJI GATNNNNATC 2 cut(s) 228, 1416
BseLI CCNNNNNNNGG 1 cut(s) 300
BseMII CTCAG 3 cut(s) 81, 446, 918
BseNI ACTGG 1 cut(s) 917
BseXI GCAGC 4 cut(s) 72, 127, 130, 1243
BshFI GGCC 2 cut(s) 331, 675
BsiHKAI GWGCWC 1 cut(s) 1293
BsiSI CCGG 4 cut(s) 51, 111, 1029, 1037
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 300
BsmAI GTCTC 3 cut(s) 441, 867, 1052
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 2 cut(s) 331, 675
Bsp1286I GDGCHC 2 cut(s) 829, 1293
Bsp13I TCCGGA 1 cut(s) 1028
Bsp1407I TGTACA 1 cut(s) 1392
Bsp143I GATC 8 cut(s) 77, 424, 477, 549, 905, 1310, 1411, 1427
Bsp19I CCATGG 1 cut(s) 1103
BspACI CCGC 2 cut(s) 602, 989
BspANI GGCC 2 cut(s) 331, 675
BspCNI CTCAG 3 cut(s) 82, 445, 919
BspEI TCCGGA 1 cut(s) 1028
BspLI GGNNCC 4 cut(s) 109, 527, 748, 851
BspMAI CTGCAG 1 cut(s) 148
BspPI GGATC 3 cut(s) 913, 1318, 1406
BsrFI RCCGGY 1 cut(s) 110
BsrGI TGTACA 1 cut(s) 1392
BsrI ACTGG 1 cut(s) 917
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 6 cut(s) 199, 388, 798, 1103, 1253, 1495
BssMI GATC 8 cut(s) 77, 424, 477, 549, 905, 1310, 1411, 1427
BssSI CACGAG 2 cut(s) 192, 1318
BssT1I CCWWGG 5 cut(s) 199, 798, 1103, 1253, 1495
Bst2BI CACGAG 2 cut(s) 192, 1318
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 3 cut(s) 354, 635, 1399
Bst6I CTCTTC 3 cut(s) 319, 655, 1531
BstAUI TGTACA 1 cut(s) 1392
BstC8I GCNNGC 4 cut(s) 112, 690, 696, 1272
BstDEI CTNAG 5 cut(s) 90, 274, 432, 854, 927
BstDSI CCRYGG 2 cut(s) 388, 1103
BstF5I GGATG 6 cut(s) 250, 369, 427, 451, 464, 808
BstHHI GCGC 1 cut(s) 694
BstKTI GATC 8 cut(s) 80, 427, 480, 552, 908, 1313, 1414, 1430
BstMAI GTCTC 3 cut(s) 441, 867, 1052
BstMBI GATC 8 cut(s) 77, 424, 477, 549, 905, 1310, 1411, 1427
BstMWI GCNNNNNNNGC 2 cut(s) 23, 1228
BstNI CCWGG 1 cut(s) 606
BstNSI RCATGY 3 cut(s) 222, 407, 1274
BstSCI CCNGG 3 cut(s) 50, 604, 1035
BstSFI CTRYAG 3 cut(s) 144, 350, 573
BstV1I GCAGC 4 cut(s) 72, 127, 130, 1243
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 2 cut(s) 77, 1427
BstYI RGATCY 2 cut(s) 77, 1427
Bsu36I CCTNAGG 1 cut(s) 90
BsuI GTATCC 1 cut(s) 589
BsuRI GGCC 2 cut(s) 331, 675
BtgI CCRYGG 2 cut(s) 388, 1103
BtgZI GCGATG 1 cut(s) 1403
BtsCI GGATG 6 cut(s) 250, 369, 427, 451, 464, 808
BtsI GCAGTG 1 cut(s) 810
BtsIMutI CAGTG 3 cut(s) 134, 810, 1395
Cac8I GCNNGC 4 cut(s) 112, 690, 696, 1272
CaiI CAGNNNCTG 1 cut(s) 439
CfoI GCGC 1 cut(s) 694
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 2 cut(s) 329, 543
Csp6I GTAC 4 cut(s) 238, 1209, 1393, 1453
CviAII CATG 8 cut(s) 219, 404, 530, 957, 986, 1054, 1104, 1271
CviQI GTAC 4 cut(s) 238, 1209, 1393, 1453
DdeI CTNAG 5 cut(s) 90, 274, 432, 854, 927
DpnI GATC 8 cut(s) 79, 426, 479, 551, 907, 1312, 1413, 1429
DpnII GATC 8 cut(s) 77, 424, 477, 549, 905, 1310, 1411, 1427
Eam1104I CTCTTC 3 cut(s) 319, 655, 1531
EarI CTCTTC 3 cut(s) 319, 655, 1531
Eco130I CCWWGG 5 cut(s) 199, 798, 1103, 1253, 1495
Eco24I GRGCYC 1 cut(s) 829
Eco47I GGWCC 1 cut(s) 543
Eco57I CTGAAG 2 cut(s) 496, 624
Eco81I CCTNAGG 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 604
EcoT14I CCWWGG 5 cut(s) 199, 798, 1103, 1253, 1495
EcoT38I GRGCYC 1 cut(s) 829
ErhI CCWWGG 5 cut(s) 199, 798, 1103, 1253, 1495
FaeI CATG 8 cut(s) 222, 407, 533, 960, 989, 1057, 1107, 1274
FaqI GGGAC 1 cut(s) 188
FatI CATG 8 cut(s) 218, 403, 529, 956, 985, 1053, 1103, 1270
FbaI TGATCA 2 cut(s) 424, 477
FblI GTMKAC 2 cut(s) 349, 1161
Fnu4HI GCNGC 5 cut(s) 61, 141, 144, 990, 1232
FokI GGATG 6 cut(s) 257, 356, 414, 458, 471, 815
FriOI GRGCYC 1 cut(s) 829
Fsp4HI GCNGC 5 cut(s) 61, 141, 144, 990, 1232
FspBI CTAG 4 cut(s) 165, 306, 1364, 1537
FspI TGCGCA 1 cut(s) 693
GlaI GCGC 1 cut(s) 693
GluI GCNGC 5 cut(s) 61, 141, 144, 990, 1232
GsuI CTGGAG 2 cut(s) 461, 1145
HaeIII GGCC 2 cut(s) 331, 675
HapII CCGG 4 cut(s) 51, 111, 1029, 1037
HhaI GCGC 1 cut(s) 694
Hin1II CATG 8 cut(s) 222, 407, 533, 960, 989, 1057, 1107, 1274
Hin6I GCGC 1 cut(s) 692
HinP1I GCGC 1 cut(s) 692
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 7 cut(s) 96, 288, 935, 972, 1226, 1475, 1490
HpaI GTTAAC 1 cut(s) 337
HpaII CCGG 4 cut(s) 51, 111, 1029, 1037
HphI GGTGA 1 cut(s) 1484
Hpy166II GTNNAC 6 cut(s) 265, 337, 350, 1162, 1211, 1395
Hpy188I TCNGA 7 cut(s) 82, 287, 515, 928, 940, 1315, 1459
Hpy188III TCNNGA 8 cut(s) 194, 440, 708, 881, 909, 1029, 1169, 1487
Hpy8I GTNNAC 6 cut(s) 265, 337, 350, 1162, 1211, 1395
Hpy99I CGWCG 2 cut(s) 68, 845
HpyAV CCTTC 4 cut(s) 128, 150, 1029, 1237
HpyCH4III ACNGT 3 cut(s) 354, 635, 1399
HpyCH4IV ACGT 2 cut(s) 66, 840
HpyCH4V TGCA 6 cut(s) 60, 146, 500, 815, 1270, 1513
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 1228
HpyF3I CTNAG 5 cut(s) 90, 274, 432, 854, 927
HpySE526I ACGT 2 cut(s) 66, 840
Hsp92II CATG 8 cut(s) 222, 407, 533, 960, 989, 1057, 1107, 1274
HspAI GCGC 1 cut(s) 692
Kpn2I TCCGGA 1 cut(s) 1028
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Ksp22I TGATCA 2 cut(s) 424, 477
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 8 cut(s) 77, 424, 477, 549, 905, 1310, 1411, 1427
LmnI GCTCC 3 cut(s) 107, 137, 800
Lsp1109I GCAGC 4 cut(s) 72, 127, 130, 1243
LweI GCATC 3 cut(s) 268, 796, 1509
MaeI CTAG 4 cut(s) 165, 306, 1364, 1537
MaeII ACGT 2 cut(s) 66, 840
MaeIII GTNAC 7 cut(s) 185, 194, 203, 406, 581, 959, 997
MalI GATC 8 cut(s) 79, 426, 479, 551, 907, 1312, 1413, 1429
MboI GATC 8 cut(s) 77, 424, 477, 549, 905, 1310, 1411, 1427
MboII GAAGA 6 cut(s) 161, 336, 630, 642, 1518, 1521
MflI RGATCY 2 cut(s) 77, 1427
MhlI GDGCHC 2 cut(s) 829, 1293
MluCI AATT 5 cut(s) 393, 679, 1181, 1402, 1508
MlyI GAGTC 1 cut(s) 981
MroI TCCGGA 1 cut(s) 1028
MroNI GCCGGC 1 cut(s) 110
MseI TTAA 2 cut(s) 336, 948
MslI CAYNNNNRTG 2 cut(s) 192, 984
MspA1I CMGCKG 1 cut(s) 1234
MspI CCGG 4 cut(s) 51, 111, 1029, 1037
MspR9I CCNGG 3 cut(s) 52, 606, 1037
MvaI CCWGG 1 cut(s) 606
MwoI GCNNNNNNNGC 2 cut(s) 23, 1228
NaeI GCCGGC 1 cut(s) 112
NciI CCSGG 2 cut(s) 52, 1037
NcoI CCATGG 1 cut(s) 1103
NdeII GATC 8 cut(s) 77, 424, 477, 549, 905, 1310, 1411, 1427
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 8 cut(s) 222, 407, 533, 960, 989, 1057, 1107, 1274
NlaIV GGNNCC 4 cut(s) 109, 527, 748, 851
NmuCI GTSAC 4 cut(s) 185, 194, 959, 997
NsbI TGCGCA 1 cut(s) 693
NspI RCATGY 3 cut(s) 222, 407, 1274
OliI CACNNNNGTG 1 cut(s) 192
PaeI GCATGC 1 cut(s) 1274
PciI ACATGT 1 cut(s) 403
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 6 cut(s) 96, 288, 935, 1226, 1475, 1490
PflMI CCANNNNNTGG 1 cut(s) 300
PfoI TCCNGGA 1 cut(s) 50
PkrI GCNGC 5 cut(s) 62, 142, 145, 991, 1233
PleI GAGTC 1 cut(s) 980
PpsI GAGTC 1 cut(s) 980
PscI ACATGT 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 604
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 4 cut(s) 109, 527, 748, 851
PspPI GGNCC 2 cut(s) 329, 543
PstI CTGCAG 1 cut(s) 148
PstNI CAGNNNCTG 1 cut(s) 439
PsuI RGATCY 2 cut(s) 77, 1427
PvuII CAGCTG 1 cut(s) 1234
RsaI GTAC 4 cut(s) 239, 1210, 1394, 1454
RsaNI GTAC 4 cut(s) 238, 1209, 1393, 1453
RseI CAYNNNNRTG 2 cut(s) 192, 984
SaqAI TTAA 2 cut(s) 336, 948
SatI GCNGC 5 cut(s) 61, 141, 144, 990, 1232
Sau3AI GATC 8 cut(s) 77, 424, 477, 549, 905, 1310, 1411, 1427
Sau96I GGNCC 2 cut(s) 329, 543
SchI GAGTC 1 cut(s) 981
ScrFI CCNGG 3 cut(s) 52, 606, 1037
SduI GDGCHC 2 cut(s) 829, 1293
SfaNI GCATC 3 cut(s) 268, 796, 1509
SfcI CTRYAG 3 cut(s) 144, 350, 573
SinI GGWCC 1 cut(s) 543
SmiMI CAYNNNNRTG 2 cut(s) 192, 984
SmlI CTYRAG 2 cut(s) 1169, 1466
SmoI CTYRAG 2 cut(s) 1169, 1466
SphI GCATGC 1 cut(s) 1274
Sse9I AATT 5 cut(s) 393, 679, 1181, 1402, 1508
SsiI CCGC 2 cut(s) 602, 989
SspMI CTAG 4 cut(s) 165, 306, 1364, 1537
StyD4I CCNGG 3 cut(s) 50, 604, 1035
StyI CCWWGG 5 cut(s) 199, 798, 1103, 1253, 1495
TaaI ACNGT 3 cut(s) 354, 635, 1399
TaiI ACGT 2 cut(s) 69, 843
TasI AATT 5 cut(s) 393, 679, 1181, 1402, 1508
TatI WGTACW 2 cut(s) 237, 1392
TauI GCSGC 1 cut(s) 992
TfiI GAWTC 6 cut(s) 96, 288, 935, 1226, 1475, 1490
Tru1I TTAA 2 cut(s) 336, 948
Tru9I TTAA 2 cut(s) 336, 948
TscAI CASTG 3 cut(s) 134, 817, 1402
TseFI GTSAC 4 cut(s) 185, 194, 959, 997
TseI GCWGC 4 cut(s) 60, 140, 143, 1231
Tsp45I GTSAC 4 cut(s) 185, 194, 959, 997
TspDTI ATGAA 4 cut(s) 462, 757, 905, 1232
TspGWI ACGGA 3 cut(s) 168, 222, 405
TspRI CASTG 3 cut(s) 134, 817, 1402
Van91I CCANNNNNTGG 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 543
XapI RAATTY 1 cut(s) 1181
XceI RCATGY 3 cut(s) 222, 407, 1274
XmiI GTMKAC 2 cut(s) 349, 1161
XspI CTAG 4 cut(s) 165, 306, 1364, 1537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.