Rmu_sc0003502.1_g000015

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003502.1
Physical Location & Seq
Forward (+)
53300 .. 58586
5287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003502.1_g000015.1.cds

Sequence Viewer

Length: 1464 bp
atggttctgcaactgcaattgctcctctttctttgcttcataattcttctcggtatccccctaaatctttctttagcttttgatttagaactaggcaatgatgagtttaaaagagatgacttccctcccccaccggactttgtttttggtgcttcctcctctgcttaccaggtggaaggtgctgcggaccaagacgggagaaccccaagcatcttggacacctatactcatgctggaaaaatgcacggagccaccggagatatagcgtgtgatgagtatcataaatacaaggaagatgtgcaactgatggtggatactggtttagaggcgtatagattttccatctcatggtcaagacttatacccaatggaagaggacccgtgaatccaaagggtgtacaatattacaacaatctcattgaccaactaatcagcaaaggaatccagcctcatgttactttacaccacagtgatctcccacaggcactcgacgatgagtatggaggatgggttagcccacagattgtaaaagacttcactgcatatgcaaatgtttgcttcgaacagtttggcgatcgagttgggcattggactactatgaatgagccaaatgtatttgtactcgggggttatgatattggattccttccaccacaacgatgttcagctccatttggtcttaattgctcgaggggtaactcctcaactgagccatacatggcaattcattatttcttgttatctcatgcatcagcagcagcactctacaagcatacctaccagcacaagcagcgtgggtttataggcatcaatatatttgcctattggtttgttcctcaaaccgaaacccatcaagaccaagttgctactcaaagagccctcgacttctattttgggttatgcatcctttggtgttccttcgacttcattggacttaattactataacacattgtatgccagtgacaactctgccgcattaaacattcaaaacagagactatgtagcggattcggcaacccagatttctcctttggattacaatacatcaacgttggagtttccgataacaccttggggtatggaaggactgttggaatatatcaaacaacactacggcaatcctcccttatatatccatgaaaatggccaacaaactcgacgtaattcttcgttggaagattggtccagaattgaatatttgcatggacacgttcacagtttgcttaatgttataaggaatggatcaaatgctagaggctattttacctggtctctcttggattcaattgagcttttgggtggctatgaaataagctacggcctttattacatcgatttggacgatccggatttaaaaagacagcctaaactctctgcacattggtactcaaagtttctaaagaacaaaaacatcactccacgtttagattcagatgctgatcaacaatacttctttgagtag

Protein Analysis

487

Amino Acids

55.5

Weight (kDa)

5.14

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1235
AccB7I CCANNNNNTGG 1 cut(s) 348
AccIII TCCGGA 1 cut(s) 1348
AciI CCGC 3 cut(s) 185, 975, 1007
AclI AACGTT 1 cut(s) 1052
AclWI GGATC 2 cut(s) 1252, 1340
AcoI YGGCCR 1 cut(s) 1147
AfaI GTAC 3 cut(s) 399, 621, 1388
AfiI CCNNNNNNNGG 1 cut(s) 348
AflIII ACRYGT 1 cut(s) 1210
AgsI TTSAA 3 cut(s) 989, 1196, 1287
AjnI CCWGG 2 cut(s) 168, 1268
AleI CACNNNNGTG 1 cut(s) 468
AluBI AGCT 4 cut(s) 77, 668, 1294, 1317
AluI AGCT 4 cut(s) 77, 668, 1294, 1317
Alw26I GTCTC 2 cut(s) 990, 1278
AlwI GGATC 2 cut(s) 1252, 1340
AlwNI CAGNNNCTG 1 cut(s) 1439
Ama87I CYCGRG 2 cut(s) 623, 688
Aor13HI TCCGGA 1 cut(s) 1348
AoxI GGCC 2 cut(s) 1147, 1321
ApeKI GCWGC 4 cut(s) 182, 755, 758, 790
ArsI GACNNNNNNTTYG 4 cut(s) 128, 160, 875, 907
AspS9I GGNCC 3 cut(s) 187, 377, 1185
AsuII TTCGAA 1 cut(s) 561
AvaI CYCGRG 2 cut(s) 623, 688
AvaII GGWCC 3 cut(s) 187, 377, 1185
BalI TGGCCA 1 cut(s) 1149
BanII GRGCYC 1 cut(s) 880
BbvI GCAGC 4 cut(s) 169, 767, 770, 802
BccI CCATC 4 cut(s) 301, 350, 501, 858
BceAI ACGGC 2 cut(s) 1132, 1336
BciT130I CCWGG 2 cut(s) 170, 1270
BciVI GTATCC 2 cut(s) 65, 307
BclI TGATCA 1 cut(s) 1441
BcoDI GTCTC 2 cut(s) 990, 1278
BfaI CTAG 2 cut(s) 92, 1254
BfuI GTATCC 2 cut(s) 65, 307
BisI GCNGC 5 cut(s) 183, 756, 759, 791, 975
BlsI GCNGC 5 cut(s) 184, 757, 760, 792, 976
Bme1390I CCNGG 2 cut(s) 170, 1270
Bme18I GGWCC 3 cut(s) 187, 377, 1185
BmeT110I CYCGRG 2 cut(s) 623, 688
BmgT120I GGNCC 3 cut(s) 187, 377, 1185
BmiI GGNNCC 2 cut(s) 250, 379
BmrFI CCNGG 2 cut(s) 170, 1270
BmsI GCATC 5 cut(s) 219, 758, 816, 912, 1426
Bpu14I TTCGAA 1 cut(s) 561
Bsa29I ATCGAT 1 cut(s) 1335
BsaBI GATNNNNATC 2 cut(s) 276, 1440
BsaI GGTCTC 1 cut(s) 1278
BsaJI CCNNGG 1 cut(s) 1073
BsaWI WCCGGW 3 cut(s) 133, 254, 1348
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 2 cut(s) 322, 960
Bse3DI GCAATG 1 cut(s) 103
Bse8I GATNNNNATC 2 cut(s) 276, 1440
BseAI TCCGGA 1 cut(s) 1348
BseBI CCWGG 2 cut(s) 170, 1270
BseCI ATCGAT 1 cut(s) 1335
BseDI CCNNGG 1 cut(s) 1073
BseGI GGATG 2 cut(s) 512, 903
BseJI GATNNNNATC 2 cut(s) 276, 1440
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 699
BseNI ACTGG 2 cut(s) 322, 960
BseRI GAGGAG 3 cut(s) 14, 148, 691
BseXI GCAGC 4 cut(s) 169, 767, 770, 802
BsgI GTGCAG 1 cut(s) 1362
Bsh1285I CGRYCG 1 cut(s) 577
BshFI GGCC 2 cut(s) 1149, 1323
BshVI ATCGAT 1 cut(s) 1335
BsiEI CGRYCG 1 cut(s) 577
BsiHKCI CYCGRG 2 cut(s) 623, 688
BsiSI CCGG 3 cut(s) 134, 255, 1349
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 2 cut(s) 990, 1278
BsnI GGCC 2 cut(s) 1149, 1323
Bso31I GGTCTC 1 cut(s) 1278
BsoBI CYCGRG 2 cut(s) 623, 688
Bsp119I TTCGAA 1 cut(s) 561
Bsp1286I GDGCHC 1 cut(s) 880
Bsp13I TCCGGA 1 cut(s) 1348
Bsp1407I TGTACA 1 cut(s) 397
Bsp143I GATC 5 cut(s) 472, 574, 1244, 1345, 1441
BspACI CCGC 3 cut(s) 185, 975, 1007
BspANI GGCC 2 cut(s) 1149, 1323
BspCNI CTCAG 1 cut(s) 700
BspDI ATCGAT 1 cut(s) 1335
BspEI TCCGGA 1 cut(s) 1348
BspLI GGNNCC 2 cut(s) 250, 379
BspPI GGATC 2 cut(s) 1252, 1340
BspT104I TTCGAA 1 cut(s) 561
BspTNI GGTCTC 1 cut(s) 1278
BsrDI GCAATG 1 cut(s) 103
BsrGI TGTACA 1 cut(s) 397
BsrI ACTGG 2 cut(s) 322, 960
BssECI CCNNGG 1 cut(s) 1073
BssMI GATC 5 cut(s) 472, 574, 1244, 1345, 1441
BssT1I CCWWGG 1 cut(s) 1073
Bst2UI CCWGG 2 cut(s) 170, 1270
Bst4CI ACNGT 4 cut(s) 470, 567, 1092, 1220
Bst6I CTCTTC 1 cut(s) 367
BstAUI TGTACA 1 cut(s) 397
BstBI TTCGAA 1 cut(s) 561
BstDEI CTNAG 1 cut(s) 708
BstF5I GGATG 2 cut(s) 512, 903
BstKTI GATC 5 cut(s) 475, 577, 1247, 1348, 1444
BstMAI GTCTC 2 cut(s) 990, 1278
BstMBI GATC 5 cut(s) 472, 574, 1244, 1345, 1441
BstMCI CGRYCG 1 cut(s) 577
BstMWI GCNNNNNNNGC 3 cut(s) 755, 790, 1013
BstNI CCWGG 2 cut(s) 170, 1270
BstSCI CCNGG 2 cut(s) 168, 1268
BstV1I GCAGC 4 cut(s) 169, 767, 770, 802
BstXI CCANNNNNNTGG 1 cut(s) 1145
Bsu15I ATCGAT 1 cut(s) 1335
BsuI GTATCC 2 cut(s) 65, 307
BsuRI GGCC 2 cut(s) 1149, 1323
BsuTUI ATCGAT 1 cut(s) 1335
BtsCI GGATG 2 cut(s) 512, 903
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 3 cut(s) 475, 537, 967
CaiI CAGNNNCTG 1 cut(s) 1439
Cfr13I GGNCC 3 cut(s) 187, 377, 1185
ClaI ATCGAT 1 cut(s) 1335
CsiI ACCWGGT 2 cut(s) 168, 1268
Csp6I GTAC 3 cut(s) 398, 620, 1387
CspCI CAANNNNNGTGG 2 cut(s) 775, 810
CviAII CATG 7 cut(s) 230, 348, 452, 718, 746, 1139, 1205
CviQI GTAC 3 cut(s) 398, 620, 1387
DdeI CTNAG 1 cut(s) 708
DpnI GATC 5 cut(s) 474, 576, 1246, 1347, 1443
DpnII GATC 5 cut(s) 472, 574, 1244, 1345, 1441
DraI TTTAAA 2 cut(s) 109, 1356
EaeI YGGCCR 1 cut(s) 1147
Eam1104I CTCTTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 367
Eco130I CCWWGG 1 cut(s) 1073
Eco24I GRGCYC 1 cut(s) 880
Eco31I GGTCTC 1 cut(s) 1278
Eco47I GGWCC 3 cut(s) 187, 377, 1185
Eco88I CYCGRG 2 cut(s) 623, 688
EcoO109I RGGNCCY 1 cut(s) 377
EcoRII CCWGG 2 cut(s) 168, 1268
EcoT14I CCWWGG 1 cut(s) 1073
EcoT22I ATGCAT 2 cut(s) 751, 905
EcoT38I GRGCYC 1 cut(s) 880
ErhI CCWWGG 1 cut(s) 1073
FaeI CATG 7 cut(s) 233, 351, 455, 721, 749, 1142, 1208
FatI CATG 7 cut(s) 229, 347, 451, 717, 745, 1138, 1204
FauNDI CATATG 1 cut(s) 544
FbaI TGATCA 1 cut(s) 1441
Fnu4HI GCNGC 5 cut(s) 183, 756, 759, 791, 975
FokI GGATG 2 cut(s) 519, 890
FriOI GRGCYC 1 cut(s) 880
Fsp4HI GCNGC 5 cut(s) 183, 756, 759, 791, 975
FspBI CTAG 2 cut(s) 92, 1254
GluI GCNGC 5 cut(s) 183, 756, 759, 791, 975
HaeIII GGCC 2 cut(s) 1149, 1323
HapII CCGG 3 cut(s) 134, 255, 1349
Hin1II CATG 7 cut(s) 233, 351, 455, 721, 749, 1142, 1208
HinfI GANTC 6 cut(s) 385, 441, 642, 1010, 1283, 1430
HpaII CCGG 3 cut(s) 134, 255, 1349
Hpy166II GTNNAC 2 cut(s) 398, 1216
Hpy188I TCNGA 2 cut(s) 1065, 1435
Hpy188III TCNNGA 4 cut(s) 354, 854, 1188, 1349
Hpy8I GTNNAC 2 cut(s) 398, 1216
Hpy99I CGWCG 2 cut(s) 494, 1164
HpyAV CCTTC 4 cut(s) 170, 656, 928, 1079
HpyCH4III ACNGT 4 cut(s) 470, 567, 1092, 1220
HpyCH4IV ACGT 4 cut(s) 1052, 1162, 1212, 1423
HpyF10VI GCNNNNNNNGC 3 cut(s) 755, 790, 1013
HpyF3I CTNAG 1 cut(s) 708
HpySE526I ACGT 4 cut(s) 1052, 1162, 1212, 1423
Hsp92II CATG 7 cut(s) 233, 351, 455, 721, 749, 1142, 1208
Kpn2I TCCGGA 1 cut(s) 1348
Ksp22I TGATCA 1 cut(s) 1441
Kzo9I GATC 5 cut(s) 472, 574, 1244, 1345, 1441
LmnI GCTCC 3 cut(s) 27, 248, 673
Lsp1109I GCAGC 4 cut(s) 169, 767, 770, 802
LweI GCATC 5 cut(s) 219, 758, 816, 912, 1426
MabI ACCWGGT 2 cut(s) 168, 1268
MaeI CTAG 2 cut(s) 92, 1254
MaeII ACGT 4 cut(s) 1052, 1162, 1212, 1423
MaeIII GTNAC 3 cut(s) 454, 695, 962
MalI GATC 5 cut(s) 474, 576, 1246, 1347, 1443
MboI GATC 5 cut(s) 472, 574, 1244, 1345, 1441
MboII GAAGA 5 cut(s) 38, 305, 384, 1161, 1190
MfeI CAATTG 2 cut(s) 17, 1287
MhlI GDGCHC 1 cut(s) 880
MlsI TGGCCA 1 cut(s) 1149
MluCI AATT 8 cut(s) 17, 42, 682, 723, 937, 1165, 1191, 1287
MluNI TGGCCA 1 cut(s) 1149
MmeI TCCRAC 3 cut(s) 1035, 1074, 1155
Mox20I TGGCCA 1 cut(s) 1149
Mph1103I ATGCAT 2 cut(s) 751, 905
MroI TCCGGA 1 cut(s) 1348
MscI TGGCCA 1 cut(s) 1149
MseI TTAA 6 cut(s) 108, 681, 936, 980, 1227, 1355
MslI CAYNNNNRTG 3 cut(s) 468, 658, 1143
Msp20I TGGCCA 1 cut(s) 1149
MspI CCGG 3 cut(s) 134, 255, 1349
MspR9I CCNGG 2 cut(s) 170, 1270
MunI CAATTG 2 cut(s) 17, 1287
MvaI CCWGG 2 cut(s) 170, 1270
MwoI GCNNNNNNNGC 3 cut(s) 755, 790, 1013
NdeI CATATG 1 cut(s) 544
NdeII GATC 5 cut(s) 472, 574, 1244, 1345, 1441
NlaIII CATG 7 cut(s) 233, 351, 455, 721, 749, 1142, 1208
NlaIV GGNNCC 2 cut(s) 250, 379
NmuCI GTSAC 1 cut(s) 962
NsiI ATGCAT 2 cut(s) 751, 905
NspV TTCGAA 1 cut(s) 561
OliI CACNNNNGTG 1 cut(s) 468
PaeR7I CTCGAG 1 cut(s) 688
PcsI WCGNNNNNNNCGW 1 cut(s) 1341
PfeI GAWTC 6 cut(s) 385, 441, 642, 1010, 1283, 1430
PflMI CCANNNNNTGG 1 cut(s) 348
PkrI GCNGC 5 cut(s) 184, 757, 760, 792, 976
Ple19I CGATCG 1 cut(s) 577
PpuMI RGGWCCY 1 cut(s) 377
PsiI TTATAA 1 cut(s) 1235
Psp1406I AACGTT 1 cut(s) 1052
Psp5II RGGWCCY 1 cut(s) 377
Psp6I CCWGG 2 cut(s) 168, 1268
PspGI CCWGG 2 cut(s) 168, 1268
PspN4I GGNNCC 2 cut(s) 250, 379
PspPI GGNCC 3 cut(s) 187, 377, 1185
PspPPI RGGWCCY 1 cut(s) 377
PspXI VCTCGAGB 1 cut(s) 688
PstNI CAGNNNCTG 1 cut(s) 1439
PvuI CGATCG 1 cut(s) 577
RsaI GTAC 3 cut(s) 399, 621, 1388
RsaNI GTAC 3 cut(s) 398, 620, 1387
RseI CAYNNNNRTG 3 cut(s) 468, 658, 1143
SaqAI TTAA 6 cut(s) 108, 681, 936, 980, 1227, 1355
SatI GCNGC 5 cut(s) 183, 756, 759, 791, 975
Sau3AI GATC 5 cut(s) 472, 574, 1244, 1345, 1441
Sau96I GGNCC 3 cut(s) 187, 377, 1185
ScrFI CCNGG 2 cut(s) 170, 1270
SduI GDGCHC 1 cut(s) 880
SexAI ACCWGGT 2 cut(s) 168, 1268
SfaNI GCATC 5 cut(s) 219, 758, 816, 912, 1426
Sfr274I CTCGAG 1 cut(s) 688
SfuI TTCGAA 1 cut(s) 561
SinI GGWCC 3 cut(s) 187, 377, 1185
SlaI CTCGAG 1 cut(s) 688
SmiMI CAYNNNNRTG 3 cut(s) 468, 658, 1143
SmlI CTYRAG 1 cut(s) 688
SmoI CTYRAG 1 cut(s) 688
Sse9I AATT 8 cut(s) 17, 42, 682, 723, 937, 1165, 1191, 1287
SsiI CCGC 3 cut(s) 185, 975, 1007
SspI AATATT 2 cut(s) 404, 1199
SspMI CTAG 2 cut(s) 92, 1254
StyD4I CCNGG 2 cut(s) 168, 1268
StyI CCWWGG 1 cut(s) 1073
TaaI ACNGT 4 cut(s) 470, 567, 1092, 1220
TaiI ACGT 4 cut(s) 1055, 1165, 1215, 1426
TaqI TCGA 8 cut(s) 489, 561, 577, 689, 882, 921, 1159, 1335
TasI AATT 8 cut(s) 17, 42, 682, 723, 937, 1165, 1191, 1287
TatI WGTACW 2 cut(s) 397, 619
TauI GCSGC 1 cut(s) 977
TfiI GAWTC 6 cut(s) 385, 441, 642, 1010, 1283, 1430
Tru1I TTAA 6 cut(s) 108, 681, 936, 980, 1227, 1355
Tru9I TTAA 6 cut(s) 108, 681, 936, 980, 1227, 1355
TscAI CASTG 3 cut(s) 475, 544, 967
TseFI GTSAC 1 cut(s) 962
TseI GCWGC 4 cut(s) 182, 755, 758, 790
Tsp45I GTSAC 1 cut(s) 962
TspDTI ATGAA 6 cut(s) 28, 614, 716, 916, 1155, 1323
TspGWI ACGGA 1 cut(s) 261
TspRI CASTG 3 cut(s) 475, 544, 967
Van91I CCANNNNNTGG 1 cut(s) 348
VpaK11BI GGWCC 3 cut(s) 187, 377, 1185
XhoI CTCGAG 1 cut(s) 688
XspI CTAG 2 cut(s) 92, 1254
Zsp2I ATGCAT 2 cut(s) 751, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.