Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000569

Physical Location & Seq

Genomic Coordinates Reverse (-)

5425641 .. 5427472

Gene Structure 1832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTTACATTGCATCACTACGATCTTCCTCAGTATCTCGAGGATGACTATGGAGGATGGACCAATCGCAGAATCATACTTTACTGCTTATGCAGATGTTTGCTTTAGAGAGTTTGGGAACCATGTCAAATTCTGGACCACTATCAACGAGGCTAATGTATTCACTATCGGAGGTTACAACGATGGGACTTCACCGCCTGGTCGTTGTTCTAACTGCTCGTCAGGGAACTCTTCCACTGAAACATACATTGTAGGCCATAACTTGCTTCTTGCACACGCCTCTGTTTCCAGACTATATCAGCAAAAGTACAAGGATAAGCAAGGAGGTTCTGTAGGGTTTAGCTTATATGCATTTGAGTTTATTCCTCAGACAAGCTCTTCTAAGGATGATGAAATTGCAATCCAAAGAGCCAAAGACTTCTTCTACGGCTGGATACTTGGGCCTCTTACATTTGGAGACTATCCTGATGAAATGAAAAGAGCTGTGGGATCAAGACTGCCAATTTTCTCAAAGGAAGAATCAGAACAAGTTAAAGGCTCCTCTGACTTCATAGGAATCATGCACTATTTTCCGGCTTTGGTGGAAAACATTAAACTTAAACCGTCTCTTTCAAGAAACACGGATTTCTACTCAGACATGGGTGTATCTTTGACTTACCTTGGCAATTTTTCAGGTTTCGGGTATGATGTTTTTCCATGGGCTATGGAAAGTGTCCTGGAATATATAAAGCAGACCTATGGCAATCCTCCTGTCTACATTCTTGAGAATGGTACACCGATGAAGCCAGATTTGGAGCTGCAACAGAAGGACACACGTAGGATTGAGTACTTACAAGCTTACATTGGTGCTGTACTCAAAGCCGTTAGGAATGGATCAGACACGAGAGGCTACTTCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0008150 GO:0008152 GO:0008422 GO:0009628 GO:0009812 GO:0015926 GO:0016787 GO:0016798 GO:0042440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046283 GO:0050896 GO:0071704 GO:0080167 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

299

Amino Acids

33.65

Weight (kDa)

5.45

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	26 - 299	5.7e-57	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G60090 AT1G60090 AT1G60270 AT1G60270 AT4G22100 AT5G16580
fragaria_vesca	FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420
malus_domestica	MD11G1150300.v1.1 MD11G1150400.v1.1 MD11G1150500.v1.1 MD11G1150800.v1.1 MD11G1151000.v1.1 MD11G1151200.v1.1
prunus_persica	Prupe.6G156200_v2.0.a1 Prupe.6G156200_v2.0.a1 Prupe.6G156400_v2.0.a1 Prupe.6G156500_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1
pyrus_communis	pycom11g12280 pycom11g12290 pycom11g12310
rosa_chinensis	RchiOBHm_Chr5g0041221 RchiOBHm_Chr5g0041231 RchiOBHm_Chr5g0041251 RchiOBHm_Chr7g0234981
rosa_laevigata	RLG00000001188 RLG00000034038 RLG00000034040 RLG00000034043
rosa_multiflora	Rmu_co8273911.1_g000001 Rmu_sc0003502.1_g000015 Rmu_sc0005650.1_g000002 Rmu_sc0007703.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039370 Rroxscaffold_1G00039400 Rroxscaffold_3G00226380
rosa_rugosa	Rorug05G0190700 Rorug05G0190800 Rorug07G0286800
rosa_samantha	Rh3BG326300 Rh5AG276800 Rh5AG277000 Rh5BG281700 Rh5BG281800 Rh5CG285800 Rh5CG313900 Rh5CG314000 Rh5DG289900 Rh5DG290100 Rh5DG290300 Rh7AG441700 Rh7DG431300
rosa_wichuraiana	Rw5G026030 Rw5G026040 Rw7G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	753
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	2 cut(s)	496, 880
AcsI	RAATTY	1 cut(s)	128
AfaI	GTAC	4 cut(s)	308, 772, 827, 852
AflIII	ACRYGT	1 cut(s)	812
AgsI	TTSAA	1 cut(s)	612
AjnI	CCWGG	2 cut(s)	196, 714
AjuI	GAANNNNNNNTTGG	4 cut(s)	404, 436, 773, 805
AluBI	AGCT	5 cut(s)	342, 375, 482, 796, 836
AluI	AGCT	5 cut(s)	342, 375, 482, 796, 836
Alw26I	GTCTC	2 cut(s)	450, 609
AlwI	GGATC	2 cut(s)	496, 880
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	2 cut(s)	253, 440
ApeKI	GCWGC	1 cut(s)	796
ApoI	RAATTY	1 cut(s)	128
AspS9I	GGNCC	3 cut(s)	59, 135, 440
AsuHPI	GGTGA	1 cut(s)	183
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	59, 135
BauI	CACGAG	1 cut(s)	880
BbvI	GCAGC	1 cut(s)	783
BccI	CCATC	2 cut(s)	50, 176
BceAI	ACGGC	2 cut(s)	442, 845
BciT130I	CCWGG	2 cut(s)	198, 716
BciVI	GTATCC	1 cut(s)	426
BcoDI	GTCTC	2 cut(s)	450, 609
BfmI	CTRYAG	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	426
BisI	GCNGC	1 cut(s)	797
BlsI	GCNGC	1 cut(s)	798
BmcAI	AGTACT	1 cut(s)	827
Bme1390I	CCNGG	2 cut(s)	198, 716
Bme18I	GGWCC	2 cut(s)	59, 135
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	3 cut(s)	59, 135, 440
BmiI	GGNNCC	2 cut(s)	119, 538
BmrFI	CCNGG	2 cut(s)	198, 716
BmsI	GCATC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	782
BsaAI	YACGTR	1 cut(s)	815
BsaJI	CCNNGG	2 cut(s)	658, 695
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bse3DI	GCAATG	1 cut(s)	7
BseBI	CCWGG	2 cut(s)	198, 716
BseDI	CCNNGG	2 cut(s)	658, 695
BseGI	GGATG	3 cut(s)	48, 61, 391
BseMI	GCAATG	1 cut(s)	7
BseMII	CTCAG	3 cut(s)	43, 380, 645
BseRI	GAGGAG	1 cut(s)	529
BseXI	GCAGC	1 cut(s)	783
BshFI	GGCC	2 cut(s)	255, 442
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	572
BslFI	GGGAC	1 cut(s)	199
BsmAI	GTCTC	2 cut(s)	450, 609
BsmBI	CGTCTC	1 cut(s)	609
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	255, 442
BsoBI	CYCGRG	1 cut(s)	37
Bsp143I	GATC	3 cut(s)	21, 488, 872
Bsp19I	CCATGG	1 cut(s)	695
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	2 cut(s)	255, 442
BspCNI	CTCAG	3 cut(s)	42, 379, 644
BspLI	GGNNCC	2 cut(s)	119, 538
BspPI	GGATC	2 cut(s)	496, 880
BspQI	GCTCTTC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	7
BssECI	CCNNGG	2 cut(s)	658, 695
BssMI	GATC	3 cut(s)	21, 488, 872
BssSI	CACGAG	1 cut(s)	880
BssT1I	CCWWGG	2 cut(s)	658, 695
Bst2BI	CACGAG	1 cut(s)	880
Bst2UI	CCWGG	2 cut(s)	198, 716
Bst4CI	ACNGT	1 cut(s)	603
Bst6I	CTCTTC	2 cut(s)	235, 382
BstBAI	YACGTR	1 cut(s)	815
BstDEI	CTNAG	4 cut(s)	29, 366, 381, 631
BstDSI	CCRYGG	1 cut(s)	695
BstF5I	GGATG	3 cut(s)	48, 61, 391
BstKTI	GATC	3 cut(s)	24, 491, 875
BstMAI	GTCTC	2 cut(s)	450, 609
BstMBI	GATC	3 cut(s)	21, 488, 872
BstNI	CCWGG	2 cut(s)	198, 716
BstSCI	CCNGG	2 cut(s)	196, 714
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	783
BsuI	GTATCC	1 cut(s)	426
BsuRI	GGCC	2 cut(s)	255, 442
BtgI	CCRYGG	1 cut(s)	695
BtsCI	GGATG	3 cut(s)	48, 61, 391
BtsIMutI	CAGTG	1 cut(s)	234
Cfr13I	GGNCC	3 cut(s)	59, 135, 440
Csp6I	GTAC	4 cut(s)	307, 771, 826, 851
CviAII	CATG	4 cut(s)	122, 559, 637, 696
CviQI	GTAC	4 cut(s)	307, 771, 826, 851
DdeI	CTNAG	4 cut(s)	29, 366, 381, 631
DpnI	GATC	3 cut(s)	23, 490, 874
DpnII	GATC	3 cut(s)	21, 488, 872
Eam1104I	CTCTTC	2 cut(s)	235, 382
EarI	CTCTTC	2 cut(s)	235, 382
Eco130I	CCWWGG	2 cut(s)	658, 695
Eco47I	GGWCC	2 cut(s)	59, 135
Eco88I	CYCGRG	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	196, 714
EcoT14I	CCWWGG	2 cut(s)	658, 695
EcoT22I	ATGCAT	1 cut(s)	352
ErhI	CCWWGG	2 cut(s)	658, 695
Esp3I	CGTCTC	1 cut(s)	609
FaeI	CATG	4 cut(s)	125, 562, 640, 699
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	4 cut(s)	121, 558, 636, 695
FblI	GTMKAC	1 cut(s)	753
Fnu4HI	GCNGC	1 cut(s)	797
FokI	GGATG	3 cut(s)	55, 68, 398
Fsp4HI	GCNGC	1 cut(s)	797
GluI	GCNGC	1 cut(s)	797
HaeIII	GGCC	2 cut(s)	255, 442
HapII	CCGG	1 cut(s)	572
Hin1II	CATG	4 cut(s)	125, 562, 640, 699
HindIII	AAGCTT	1 cut(s)	834
HinfI	GANTC	3 cut(s)	71, 518, 555
HpaII	CCGG	1 cut(s)	572
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	2 cut(s)	754, 773
Hpy188I	TCNGA	6 cut(s)	170, 369, 523, 544, 634, 877
Hpy188III	TCNNGA	7 cut(s)	37, 133, 288, 464, 492, 612, 761
Hpy8I	GTNNAC	2 cut(s)	754, 773
HpyAV	CCTTC	1 cut(s)	799
HpyCH4III	ACNGT	1 cut(s)	603
HpyCH4IV	ACGT	1 cut(s)	814
HpyCH4V	TGCA	7 cut(s)	12, 92, 272, 350, 398, 562, 799
HpyF3I	CTNAG	4 cut(s)	29, 366, 381, 631
HpySE526I	ACGT	1 cut(s)	814
Hsp92II	CATG	4 cut(s)	125, 562, 640, 699
Kzo9I	GATC	3 cut(s)	21, 488, 872
LguI	GCTCTTC	1 cut(s)	382
LmnI	GCTCC	2 cut(s)	542, 793
Lsp1109I	GCAGC	1 cut(s)	783
LweI	GCATC	1 cut(s)	21
MaeII	ACGT	1 cut(s)	814
MaeIII	GTNAC	2 cut(s)	3, 173
MalI	GATC	3 cut(s)	23, 490, 874
MboI	GATC	3 cut(s)	21, 488, 872
MboII	GAAGA	5 cut(s)	16, 222, 369, 412, 527
MluCI	AATT	4 cut(s)	128, 393, 501, 664
Mph1103I	ATGCAT	1 cut(s)	352
MseI	TTAA	3 cut(s)	531, 591, 597
MspI	CCGG	1 cut(s)	572
MspR9I	CCNGG	2 cut(s)	198, 716
MvaI	CCWGG	2 cut(s)	198, 716
NcoI	CCATGG	1 cut(s)	695
NdeII	GATC	3 cut(s)	21, 488, 872
NlaIII	CATG	4 cut(s)	125, 562, 640, 699
NlaIV	GGNNCC	2 cut(s)	119, 538
NsiI	ATGCAT	1 cut(s)	352
PaeR7I	CTCGAG	1 cut(s)	37
PciSI	GCTCTTC	1 cut(s)	382
PfeI	GAWTC	3 cut(s)	71, 518, 555
PfoI	TCCNGGA	1 cut(s)	714
PkrI	GCNGC	1 cut(s)	798
Ppu21I	YACGTR	1 cut(s)	815
Psp6I	CCWGG	2 cut(s)	196, 714
PspGI	CCWGG	2 cut(s)	196, 714
PspN4I	GGNNCC	2 cut(s)	119, 538
PspPI	GGNCC	3 cut(s)	59, 135, 440
RsaI	GTAC	4 cut(s)	308, 772, 827, 852
RsaNI	GTAC	4 cut(s)	307, 771, 826, 851
SapI	GCTCTTC	1 cut(s)	382
SaqAI	TTAA	3 cut(s)	531, 591, 597
SatI	GCNGC	1 cut(s)	797
Sau3AI	GATC	3 cut(s)	21, 488, 872
Sau96I	GGNCC	3 cut(s)	59, 135, 440
ScaI	AGTACT	1 cut(s)	827
ScrFI	CCNGG	2 cut(s)	198, 716
SfaNI	GCATC	1 cut(s)	21
SfcI	CTRYAG	1 cut(s)	330
Sfr274I	CTCGAG	1 cut(s)	37
SinI	GGWCC	2 cut(s)	59, 135
SlaI	CTCGAG	1 cut(s)	37
SmlI	CTYRAG	2 cut(s)	37, 761
SmoI	CTYRAG	2 cut(s)	37, 761
Sse9I	AATT	4 cut(s)	128, 393, 501, 664
SsiI	CCGC	1 cut(s)	194
StyD4I	CCNGG	2 cut(s)	196, 714
StyI	CCWWGG	2 cut(s)	658, 695
TaaI	ACNGT	1 cut(s)	603
TaiI	ACGT	1 cut(s)	817
TaqI	TCGA	1 cut(s)	38
TasI	AATT	4 cut(s)	128, 393, 501, 664
TatI	WGTACW	3 cut(s)	306, 825, 850
TfiI	GAWTC	3 cut(s)	71, 518, 555
Tru1I	TTAA	3 cut(s)	531, 591, 597
Tru9I	TTAA	3 cut(s)	531, 591, 597
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	1 cut(s)	796
TspDTI	ATGAA	5 cut(s)	405, 483, 488, 538, 794
TspGWI	ACGGA	1 cut(s)	635
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	2 cut(s)	59, 135
XapI	RAATTY	1 cut(s)	128
XhoI	CTCGAG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	753
ZrmI	AGTACT	1 cut(s)	827
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.