Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000569

Physical Location & Seq

Genomic Coordinates Reverse (-)

11233086 .. 11235321

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g12310.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAATGAGCCTAATGCTTTTGTACTGGTGGGGTACGATCTTGGATTTCTTCCACCACAACGATGTTCAGCTCCATTTGGTGTCAACTGTTCTAGGGGTAACTCCTCAACAGAACCGTACATGGCAACTCATAATATCTTGTTATCTCATGCATCAGCTGCTAGATTGTACAAGAAAGTATACAAGGACAGGCAGCATGGATATATAGGAATCAACATTTATGGCTTTTGGTTTGTTCCTTTAACAAAAACTAGTGAAGATGAACTTGCTACCCAAAGAGCCATGGACTTCTATTTTGGTTGGTTTTTGAATCCCTTGGTGTTTGGAGATTACCCTGATGTAATGAAAAAGATTGCAGGCTCTAGACTTCCTGTTTTTACTAGTCTCGAGTCCCGAAGTGTCATGGGTTCATTTGACTTCATTGGAGTGAATCATTATTCCACATTCTACGTCAAGGACTACACCAGCATTTTAAAGATGGAAATCAGAGACTATACGGCAGACTCAGCAGTACTGATGTTGGCACTGCAAAATGATACGTCACCATTTGAGTTTCCAATAACTCCCTGGGGCCTTCAAGGACTGTTGGAATATGTCAAGCAAAATTTTGGAAATCCTCCTTTATATATCCATGAAAATGGTCAATCGACTCGACGTAATTCCTCATTGGAGGACTGGCCGAGGGTGAAATATTTGGACGGATACATCCAATCTTTGCTTGCAGCTGTAAGGAATGGATCAAACGCAAAAGGTTATTTTGTATGGTCCTTCTTGGATTCCATTGAGTTGTTAGACGGCTATAAATCAAGCTACGGCCTATACTACGTGGATTTGGAAGACCCTGATTTAAAAAGACAACCTAAACTCTCTGCTCATTGGTACTCTCATTTTCTGAAGAGAAAAATTGTCATCAGCTTTGATGAATTTCTTACATCCATTTCCAACGGTTACTACATTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko00460 ko00500 ko00940 ko01100 ko01110 ko01120 map00230 map00460 map00500 map00940 map01100 map01110 map01120

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

321

Amino Acids

36.74

Weight (kDa)

6.39

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G60090 AT1G60090 AT1G60270 AT1G60270 AT4G22100 AT5G16580
fragaria_vesca	FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420
malus_domestica	MD11G1150300.v1.1 MD11G1150400.v1.1 MD11G1150500.v1.1 MD11G1150800.v1.1 MD11G1151000.v1.1 MD11G1151200.v1.1
prunus_persica	Prupe.6G156200_v2.0.a1 Prupe.6G156200_v2.0.a1 Prupe.6G156400_v2.0.a1 Prupe.6G156500_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1
pyrus_communis	pycom11g12280 pycom11g12290 pycom11g12310
rosa_chinensis	RchiOBHm_Chr5g0041221 RchiOBHm_Chr5g0041231 RchiOBHm_Chr5g0041251 RchiOBHm_Chr7g0234981
rosa_laevigata	RLG00000001188 RLG00000034038 RLG00000034040 RLG00000034043
rosa_multiflora	Rmu_co8273911.1_g000001 Rmu_sc0003502.1_g000015 Rmu_sc0005650.1_g000002 Rmu_sc0007703.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039370 Rroxscaffold_1G00039400 Rroxscaffold_3G00226380
rosa_rugosa	Rorug05G0190700 Rorug05G0190800 Rorug07G0286800
rosa_samantha	Rh3BG326300 Rh5AG276800 Rh5AG277000 Rh5BG281700 Rh5BG281800 Rh5CG285800 Rh5CG313900 Rh5CG314000 Rh5DG289900 Rh5DG290100 Rh5DG290300 Rh7AG441700 Rh7DG431300
rosa_wichuraiana	Rw5G026030 Rw5G026040 Rw7G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	180
AclWI	GGATC	1 cut(s)	745
AcoI	YGGCCR	1 cut(s)	677
AcsI	RAATTY	2 cut(s)	604, 923
AcuI	CTGAAG	1 cut(s)	914
AfaI	GTAC	6 cut(s)	24, 35, 119, 170, 513, 881
AgsI	TTSAA	2 cut(s)	310, 578
AhlI	ACTAGT	2 cut(s)	251, 380
AjnI	CCWGG	1 cut(s)	566
AluBI	AGCT	5 cut(s)	71, 158, 725, 810, 915
AluI	AGCT	5 cut(s)	71, 158, 725, 810, 915
Alw26I	GTCTC	2 cut(s)	389, 483
AlwI	GGATC	1 cut(s)	745
Ama87I	CYCGRG	1 cut(s)	386
AoxI	GGCC	3 cut(s)	571, 677, 814
ApeKI	GCWGC	3 cut(s)	158, 193, 722
ApoI	RAATTY	2 cut(s)	604, 923
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
AspS9I	GGNCC	2 cut(s)	571, 765
AsuHPI	GGTGA	2 cut(s)	534, 697
AvaI	CYCGRG	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	765
BbsI	GAAGAC	1 cut(s)	843
BbvI	GCAGC	3 cut(s)	145, 205, 734
BccI	CCATC	1 cut(s)	472
BceAI	ACGGC	3 cut(s)	513, 811, 829
BciT130I	CCWGG	1 cut(s)	568
BciVI	GTATCC	1 cut(s)	695
BcoDI	GTCTC	2 cut(s)	389, 483
BcuI	ACTAGT	2 cut(s)	251, 380
BfaI	CTAG	5 cut(s)	93, 162, 252, 363, 381
BfuI	GTATCC	1 cut(s)	695
BisI	GCNGC	3 cut(s)	159, 194, 723
BlsI	GCNGC	3 cut(s)	160, 195, 724
BmcAI	AGTACT	1 cut(s)	513
Bme1390I	CCNGG	1 cut(s)	568
Bme18I	GGWCC	1 cut(s)	765
BmeT110I	CYCGRG	1 cut(s)	386
BmgT120I	GGNCC	2 cut(s)	571, 765
BmiI	GGNNCC	1 cut(s)	572
BmrFI	CCNGG	1 cut(s)	568
BmsI	GCATC	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	843
BsaAI	YACGTR	1 cut(s)	826
BsaBI	GATNNNNATC	1 cut(s)	482
BsaJI	CCNNGG	5 cut(s)	282, 315, 566, 567, 680
Bse1I	ACTGG	2 cut(s)	30, 680
Bse8I	GATNNNNATC	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	568
BseDI	CCNNGG	5 cut(s)	282, 315, 566, 567, 680
BseGI	GGATG	2 cut(s)	705, 932
BseJI	GATNNNNATC	1 cut(s)	482
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	2 cut(s)	30, 680
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	3 cut(s)	145, 205, 734
BshFI	GGCC	3 cut(s)	573, 679, 816
BsiHKCI	CYCGRG	1 cut(s)	386
BslFI	GGGAC	1 cut(s)	376
BsmAI	GTCTC	2 cut(s)	389, 483
BsmFI	GGGAC	1 cut(s)	376
BsnI	GGCC	3 cut(s)	573, 679, 816
BsoBI	CYCGRG	1 cut(s)	386
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	37, 737
Bsp19I	CCATGG	1 cut(s)	282
BspANI	GGCC	3 cut(s)	573, 679, 816
BspCNI	CTCAG	1 cut(s)	518
BspLI	GGNNCC	1 cut(s)	572
BspPI	GGATC	1 cut(s)	745
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	30, 680
BssECI	CCNNGG	5 cut(s)	282, 315, 566, 567, 680
BssMI	GATC	2 cut(s)	37, 737
BssNAI	GTATAC	1 cut(s)	181
BssT1I	CCWWGG	2 cut(s)	282, 315
Bst1107I	GTATAC	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	568
Bst4CI	ACNGT	4 cut(s)	89, 117, 585, 947
Bst6I	CTCTTC	1 cut(s)	890
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstAUI	TGTACA	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	826
BstC8I	GCNNGC	2 cut(s)	358, 720
BstDEI	CTNAG	1 cut(s)	505
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	705, 932
BstKTI	GATC	2 cut(s)	40, 740
BstMAI	GTCTC	2 cut(s)	389, 483
BstMBI	GATC	2 cut(s)	37, 737
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 506
BstNI	CCWGG	1 cut(s)	568
BstSCI	CCNGG	1 cut(s)	566
BstV1I	GCAGC	3 cut(s)	145, 205, 734
BstV2I	GAAGAC	1 cut(s)	843
BstXI	CCANNNNNNTGG	1 cut(s)	638
BstZ17I	GTATAC	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	695
BsuRI	GGCC	3 cut(s)	573, 679, 816
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	705, 932
BtsI	GCAGTG	1 cut(s)	524
BtsIMutI	CAGTG	1 cut(s)	524
Cac8I	GCNNGC	2 cut(s)	358, 720
Cfr13I	GGNCC	2 cut(s)	571, 765
Csp6I	GTAC	6 cut(s)	23, 34, 118, 169, 512, 880
CviAII	CATG	6 cut(s)	121, 149, 197, 283, 403, 632
CviQI	GTAC	6 cut(s)	23, 34, 118, 169, 512, 880
DdeI	CTNAG	1 cut(s)	505
DpnI	GATC	2 cut(s)	39, 739
DpnII	GATC	2 cut(s)	37, 737
DraI	TTTAAA	2 cut(s)	474, 849
EaeI	YGGCCR	1 cut(s)	677
Eam1104I	CTCTTC	1 cut(s)	890
EarI	CTCTTC	1 cut(s)	890
Eco130I	CCWWGG	2 cut(s)	282, 315
Eco47I	GGWCC	1 cut(s)	765
Eco57I	CTGAAG	1 cut(s)	914
Eco88I	CYCGRG	1 cut(s)	386
EcoO109I	RGGNCCY	1 cut(s)	571
EcoRII	CCWGG	1 cut(s)	566
EcoT14I	CCWWGG	2 cut(s)	282, 315
EcoT22I	ATGCAT	1 cut(s)	154
ErhI	CCWWGG	2 cut(s)	282, 315
FaeI	CATG	6 cut(s)	124, 152, 200, 286, 406, 635
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	6 cut(s)	120, 148, 196, 282, 402, 631
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	159, 194, 723
FokI	GGATG	2 cut(s)	692, 919
Fsp4HI	GCNGC	3 cut(s)	159, 194, 723
FspBI	CTAG	5 cut(s)	93, 162, 252, 363, 381
GluI	GCNGC	3 cut(s)	159, 194, 723
HaeIII	GGCC	3 cut(s)	573, 679, 816
Hin1II	CATG	6 cut(s)	124, 152, 200, 286, 406, 635
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	7 cut(s)	210, 310, 389, 430, 503, 649, 776
HphI	GGTGA	2 cut(s)	534, 697
Hpy166II	GTNNAC	2 cut(s)	85, 181
Hpy188I	TCNGA	2 cut(s)	488, 894
Hpy188III	TCNNGA	3 cut(s)	363, 386, 393
Hpy8I	GTNNAC	2 cut(s)	85, 181
Hpy99I	CGWCG	1 cut(s)	657
HpyAV	CCTTC	2 cut(s)	584, 778
HpyCH4III	ACNGT	4 cut(s)	89, 117, 585, 947
HpyCH4IV	ACGT	4 cut(s)	450, 539, 655, 825
HpyCH4V	TGCA	4 cut(s)	152, 356, 529, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 506
HpyF3I	CTNAG	1 cut(s)	505
HpySE526I	ACGT	4 cut(s)	450, 539, 655, 825
Hsp92II	CATG	6 cut(s)	124, 152, 200, 286, 406, 635
Kzo9I	GATC	2 cut(s)	37, 737
LmnI	GCTCC	1 cut(s)	76
Lsp1109I	GCAGC	3 cut(s)	145, 205, 734
LweI	GCATC	1 cut(s)	161
MaeI	CTAG	5 cut(s)	93, 162, 252, 363, 381
MaeII	ACGT	4 cut(s)	450, 539, 655, 825
MaeIII	GTNAC	3 cut(s)	98, 540, 947
MalI	GATC	2 cut(s)	39, 739
MboI	GATC	2 cut(s)	37, 737
MboII	GAAGA	4 cut(s)	41, 269, 848, 907
MluCI	AATT	4 cut(s)	604, 658, 903, 923
MlyI	GAGTC	3 cut(s)	398, 497, 643
MmeI	TCCRAC	1 cut(s)	567
MnlI	CCTC	5 cut(s)	115, 627, 664, 673, 675
Mph1103I	ATGCAT	1 cut(s)	154
MseI	TTAA	3 cut(s)	242, 473, 848
MslI	CAYNNNNRTG	3 cut(s)	61, 425, 636
MspA1I	CMGCKG	2 cut(s)	158, 725
MspR9I	CCNGG	1 cut(s)	568
MvaI	CCWGG	1 cut(s)	568
MwoI	GCNNNNNNNGC	2 cut(s)	158, 506
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	2 cut(s)	37, 737
NlaIII	CATG	6 cut(s)	124, 152, 200, 286, 406, 635
NlaIV	GGNNCC	1 cut(s)	572
NmeAIII	GCCGAG	1 cut(s)	705
NmuCI	GTSAC	1 cut(s)	540
NsiI	ATGCAT	1 cut(s)	154
PaeR7I	CTCGAG	1 cut(s)	386
PasI	CCCWGGG	1 cut(s)	567
PfeI	GAWTC	4 cut(s)	210, 310, 430, 776
PkrI	GCNGC	3 cut(s)	160, 195, 724
PleI	GAGTC	3 cut(s)	397, 497, 643
PpsI	GAGTC	3 cut(s)	397, 497, 643
Ppu21I	YACGTR	1 cut(s)	826
Psp6I	CCWGG	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	566
PspN4I	GGNNCC	1 cut(s)	572
PspPI	GGNCC	2 cut(s)	571, 765
PvuII	CAGCTG	2 cut(s)	158, 725
RsaI	GTAC	6 cut(s)	24, 35, 119, 170, 513, 881
RsaNI	GTAC	6 cut(s)	23, 34, 118, 169, 512, 880
RseI	CAYNNNNRTG	3 cut(s)	61, 425, 636
SaqAI	TTAA	3 cut(s)	242, 473, 848
SatI	GCNGC	3 cut(s)	159, 194, 723
Sau3AI	GATC	2 cut(s)	37, 737
Sau96I	GGNCC	2 cut(s)	571, 765
ScaI	AGTACT	1 cut(s)	513
SchI	GAGTC	3 cut(s)	398, 497, 643
ScrFI	CCNGG	1 cut(s)	568
SfaNI	GCATC	1 cut(s)	161
Sfr274I	CTCGAG	1 cut(s)	386
SinI	GGWCC	1 cut(s)	765
SlaI	CTCGAG	1 cut(s)	386
SmiMI	CAYNNNNRTG	3 cut(s)	61, 425, 636
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SpeI	ACTAGT	2 cut(s)	251, 380
Sse9I	AATT	4 cut(s)	604, 658, 903, 923
SspI	AATATT	1 cut(s)	692
SspMI	CTAG	5 cut(s)	93, 162, 252, 363, 381
StyD4I	CCNGG	1 cut(s)	566
StyI	CCWWGG	2 cut(s)	282, 315
TaaI	ACNGT	4 cut(s)	89, 117, 585, 947
TaiI	ACGT	4 cut(s)	453, 542, 658, 828
TaqI	TCGA	3 cut(s)	387, 647, 652
TasI	AATT	4 cut(s)	604, 658, 903, 923
TatI	WGTACW	3 cut(s)	22, 168, 511
TfiI	GAWTC	4 cut(s)	210, 310, 430, 776
Tru1I	TTAA	3 cut(s)	242, 473, 848
Tru9I	TTAA	3 cut(s)	242, 473, 848
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	1 cut(s)	540
TseI	GCWGC	3 cut(s)	158, 193, 722
Tsp45I	GTSAC	1 cut(s)	540
TspDTI	ATGAA	7 cut(s)	17, 276, 359, 399, 409, 648, 936
TspGWI	ACGGA	1 cut(s)	714
TspRI	CASTG	1 cut(s)	531
VpaK11BI	GGWCC	1 cut(s)	765
XapI	RAATTY	2 cut(s)	604, 923
XbaI	TCTAGA	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	564
XhoI	CTCGAG	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	5 cut(s)	93, 162, 252, 363, 381
ZrmI	AGTACT	1 cut(s)	513
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.