Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000569

Physical Location & Seq

Genomic Coordinates Forward (+)

36231851 .. 36242770

Gene Structure 10920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG290300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCATGGAGCCACCGGAGATGTAGCATGTGATGAGTATCATAAATACAAGTTTGGCGATCGAGTTGGGCATTGGACTACTATGGATGAACCAAATGTATTTGTACTCGGTGGTTATGATATTGGATTCCTTCCACCACAACGGTGCTCAGCTCCTTTTGGTTTTAATTGCTCGAGGGGTAACTCCACAACTGAGCCATACTTGGCAATTCATAATATCTTGGTATCTCATGAAACAGCTGCTGCACTCTACAAGCATACCTACCAGCACAAGCAGCATGGGTTTATAGGCGTCATTCTATTTTCCCATTGGTTTATTCCTCGAACCAAAACCCATCAAGACCAAGTTGCTGCTCAAAGAGCTCTCGACTTCTATTTTGGTTGGGTTATGCATCCTTTGGTGTTTGGAGAGTACCCTCAAGTAATGAAAAAGGATGCATGCTCTAGAATTCCAACGTTCACCCGTGCTGAGTCTGCACTGGTCAAGGGTTCCTTTGACTTCATCGGGCTCAATTACTATAACACGCTGTATGCCAATAATGACGACTCTGCCGCCTTAAACATTCAAACTATACAGCTGATTCGGCCATCCAAATTTCTTGTATGGTCAACGAACTCGACGGAATTCATAATTGGAGGATTGGTCCAGAATAGAATACTTGCATGGACACATTCACCGTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko00460 ko00500 ko00940 ko01100 ko01110 ko01120 map00230 map00460 map00500 map00940 map01100 map01110 map01120

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

228

Amino Acids

25.84

Weight (kDa)

7.2

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	17 - 206	8e-33	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G60090 AT1G60090 AT1G60270 AT1G60270 AT4G22100 AT5G16580
fragaria_vesca	FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420
malus_domestica	MD11G1150300.v1.1 MD11G1150400.v1.1 MD11G1150500.v1.1 MD11G1150800.v1.1 MD11G1151000.v1.1 MD11G1151200.v1.1
prunus_persica	Prupe.6G156200_v2.0.a1 Prupe.6G156200_v2.0.a1 Prupe.6G156400_v2.0.a1 Prupe.6G156500_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1
pyrus_communis	pycom11g12280 pycom11g12290 pycom11g12310
rosa_chinensis	RchiOBHm_Chr5g0041221 RchiOBHm_Chr5g0041231 RchiOBHm_Chr5g0041251 RchiOBHm_Chr7g0234981
rosa_laevigata	RLG00000001188 RLG00000034038 RLG00000034040 RLG00000034043
rosa_multiflora	Rmu_co8273911.1_g000001 Rmu_sc0003502.1_g000015 Rmu_sc0005650.1_g000002 Rmu_sc0007703.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039370 Rroxscaffold_1G00039400 Rroxscaffold_3G00226380
rosa_rugosa	Rorug05G0190700 Rorug05G0190800 Rorug07G0286800
rosa_samantha	Rh3BG326300 Rh5AG276800 Rh5AG277000 Rh5BG281700 Rh5BG281800 Rh5CG285800 Rh5CG313900 Rh5CG314000 Rh5DG289900 Rh5DG290100 Rh5DG290300 Rh7AG441700 Rh7DG431300
rosa_wichuraiana	Rw5G026030 Rw5G026040 Rw7G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	552
AclI	AACGTT	1 cut(s)	455
AcoI	YGGCCR	1 cut(s)	584
AcsI	RAATTY	3 cut(s)	447, 593, 623
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	2 cut(s)	105, 413
AgsI	TTSAA	1 cut(s)	566
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AleI	CACNNNNGTG	1 cut(s)	142
AluBI	AGCT	4 cut(s)	152, 239, 362, 577
AluI	AGCT	4 cut(s)	152, 239, 362, 577
Alw21I	GWGCWC	2 cut(s)	149, 364
AlwNI	CAGNNNCTG	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	172
AoxI	GGCC	1 cut(s)	584
ApeKI	GCWGC	4 cut(s)	239, 242, 274, 350
ApoI	RAATTY	3 cut(s)	447, 593, 623
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
AspS9I	GGNCC	1 cut(s)	643
AsuHPI	GGTGA	2 cut(s)	451, 666
AvaI	CYCGRG	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	643
BanII	GRGCYC	2 cut(s)	364, 510
Bbv12I	GWGCWC	2 cut(s)	149, 364
BbvI	GCAGC	4 cut(s)	226, 229, 286, 337
BccI	CCATC	2 cut(s)	342, 595
BfaI	CTAG	1 cut(s)	444
BisI	GCNGC	5 cut(s)	240, 243, 275, 351, 552
BlpI	GCTNAGC	1 cut(s)	148
BlsI	GCNGC	5 cut(s)	241, 244, 276, 352, 553
Bme18I	GGWCC	1 cut(s)	643
BmeT110I	CYCGRG	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	643
BmiI	GGNNCC	2 cut(s)	10, 490
BmsI	GCATC	2 cut(s)	400, 424
Bpu1102I	GCTNAGC	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	402
BsaBI	GATNNNNATC	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	291
BsaWI	WCCGGW	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bse1I	ACTGG	1 cut(s)	483
Bse8I	GATNNNNATC	1 cut(s)	36
BseGI	GGATG	4 cut(s)	91, 391, 439, 587
BseJI	GATNNNNATC	1 cut(s)	36
BseMII	CTCAG	3 cut(s)	162, 183, 459
BseNI	ACTGG	1 cut(s)	483
BseXI	GCAGC	4 cut(s)	226, 229, 286, 337
BsgI	GTGCAG	2 cut(s)	228, 459
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	586
BsiEI	CGRYCG	1 cut(s)	61
BsiHKAI	GWGCWC	2 cut(s)	149, 364
BsiHKCI	CYCGRG	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	15
BsnI	GGCC	1 cut(s)	586
BsoBI	CYCGRG	1 cut(s)	172
Bsp1286I	GDGCHC	3 cut(s)	149, 364, 510
Bsp143I	GATC	1 cut(s)	58
Bsp1720I	GCTNAGC	1 cut(s)	148
BspACI	CCGC	1 cut(s)	552
BspANI	GGCC	1 cut(s)	586
BspCNI	CTCAG	3 cut(s)	161, 184, 460
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	10, 490
BsrI	ACTGG	1 cut(s)	483
BssMI	GATC	1 cut(s)	58
BssNI	GRCGYC	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	144, 678
BstACI	GRCGYC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	3 cut(s)	148, 192, 468
BstF5I	GGATG	4 cut(s)	91, 391, 439, 587
BstKTI	GATC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	58
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	4 cut(s)	274, 359, 473, 583
BstNSI	RCATGY	2 cut(s)	30, 441
BstV1I	GCAGC	4 cut(s)	226, 229, 286, 337
BsuRI	GGCC	1 cut(s)	586
BtsCI	GGATG	4 cut(s)	91, 391, 439, 587
BtsIMutI	CAGTG	1 cut(s)	476
Cac8I	GCNNGC	1 cut(s)	439
CaiI	CAGNNNCTG	1 cut(s)	242
CciI	TCATGA	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	643
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	104, 412
CviAII	CATG	6 cut(s)	5, 27, 230, 278, 438, 663
CviJI	RGCY	8 cut(s)	11, 152, 196, 239, 362, 508, 577, 586
CviKI_1	RGCY	8 cut(s)	11, 152, 196, 239, 362, 508, 577, 586
CviQI	GTAC	2 cut(s)	104, 412
DdeI	CTNAG	3 cut(s)	148, 192, 468
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	584
Ecl136II	GAGCTC	1 cut(s)	362
Eco24I	GRGCYC	2 cut(s)	364, 510
Eco47I	GGWCC	1 cut(s)	643
Eco53kI	GAGCTC	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	362
EcoRI	GAATTC	2 cut(s)	447, 623
EcoT22I	ATGCAT	3 cut(s)	6, 393, 439
EcoT38I	GRGCYC	2 cut(s)	364, 510
FaeI	CATG	6 cut(s)	8, 30, 233, 281, 441, 666
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FatI	CATG	6 cut(s)	4, 26, 229, 277, 437, 662
Fnu4HI	GCNGC	5 cut(s)	240, 243, 275, 351, 552
FokI	GGATG	4 cut(s)	98, 378, 446, 574
FriOI	GRGCYC	2 cut(s)	364, 510
Fsp4HI	GCNGC	5 cut(s)	240, 243, 275, 351, 552
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	5 cut(s)	240, 243, 275, 351, 552
HaeIII	GGCC	1 cut(s)	586
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	1 cut(s)	280
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	6 cut(s)	8, 30, 233, 281, 441, 666
HincII	GTYRAC	1 cut(s)	609
HindII	GTYRAC	1 cut(s)	609
HinfI	GANTC	4 cut(s)	126, 470, 545, 580
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	2 cut(s)	451, 666
Hpy166II	GTNNAC	2 cut(s)	459, 609
Hpy188III	TCNNGA	5 cut(s)	230, 338, 365, 444, 646
Hpy8I	GTNNAC	2 cut(s)	459, 609
Hpy99I	CGWCG	1 cut(s)	622
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	2 cut(s)	144, 678
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	6 cut(s)	4, 245, 391, 437, 476, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	274, 359, 473, 583
HpyF3I	CTNAG	3 cut(s)	148, 192, 468
HpySE526I	ACGT	1 cut(s)	455
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	6 cut(s)	8, 30, 233, 281, 441, 666
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	2 cut(s)	8, 157
LpnPI	CCDG	4 cut(s)	28, 278, 464, 659
Lsp1109I	GCAGC	4 cut(s)	226, 229, 286, 337
LweI	GCATC	2 cut(s)	400, 424
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MhlI	GDGCHC	3 cut(s)	149, 364, 510
MluCI	AATT	7 cut(s)	166, 207, 447, 511, 593, 623, 630
MlyI	GAGTC	2 cut(s)	479, 539
MmeI	TCCRAC	1 cut(s)	476
MnlI	CCTC	4 cut(s)	168, 330, 426, 629
Mph1103I	ATGCAT	3 cut(s)	6, 393, 439
MseI	TTAA	3 cut(s)	165, 557, 685
MslI	CAYNNNNRTG	1 cut(s)	142
MspA1I	CMGCKG	2 cut(s)	239, 577
MspI	CCGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	4 cut(s)	274, 359, 473, 583
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	6 cut(s)	8, 30, 233, 281, 441, 666
NlaIV	GGNNCC	2 cut(s)	10, 490
NsiI	ATGCAT	3 cut(s)	6, 393, 439
NspI	RCATGY	2 cut(s)	30, 441
OliI	CACNNNNGTG	1 cut(s)	142
PaeI	GCATGC	1 cut(s)	441
PaeR7I	CTCGAG	1 cut(s)	172
PagI	TCATGA	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	126, 580
PkrI	GCNGC	5 cut(s)	241, 244, 276, 352, 553
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	2 cut(s)	478, 539
PpsI	GAGTC	2 cut(s)	478, 539
Psp124BI	GAGCTC	1 cut(s)	364
Psp1406I	AACGTT	1 cut(s)	455
PspN4I	GGNNCC	2 cut(s)	10, 490
PspPI	GGNCC	1 cut(s)	643
PspXI	VCTCGAGB	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	242
PvuI	CGATCG	1 cut(s)	61
PvuII	CAGCTG	2 cut(s)	239, 577
RsaI	GTAC	2 cut(s)	105, 413
RsaNI	GTAC	2 cut(s)	104, 412
RseI	CAYNNNNRTG	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	364
SaqAI	TTAA	3 cut(s)	165, 557, 685
SatI	GCNGC	5 cut(s)	240, 243, 275, 351, 552
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	1 cut(s)	643
SchI	GAGTC	2 cut(s)	479, 539
SduI	GDGCHC	3 cut(s)	149, 364, 510
SetI	ASST	6 cut(s)	154, 241, 263, 364, 458, 579
SfaNI	GCATC	2 cut(s)	400, 424
Sfr274I	CTCGAG	1 cut(s)	172
SinI	GGWCC	1 cut(s)	643
SlaI	CTCGAG	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	142
SmlI	CTYRAG	2 cut(s)	172, 417
SmoI	CTYRAG	2 cut(s)	172, 417
SphI	GCATGC	1 cut(s)	441
Sse9I	AATT	7 cut(s)	166, 207, 447, 511, 593, 623, 630
SsiI	CCGC	1 cut(s)	552
SspMI	CTAG	1 cut(s)	444
SstI	GAGCTC	1 cut(s)	364
TaaI	ACNGT	2 cut(s)	144, 678
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	5 cut(s)	61, 173, 322, 366, 617
TasI	AATT	7 cut(s)	166, 207, 447, 511, 593, 623, 630
TatI	WGTACW	1 cut(s)	103
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	2 cut(s)	126, 580
Tru1I	TTAA	3 cut(s)	165, 557, 685
Tru9I	TTAA	3 cut(s)	165, 557, 685
TscAI	CASTG	1 cut(s)	483
TseI	GCWGC	4 cut(s)	239, 242, 274, 350
TspDTI	ATGAA	6 cut(s)	102, 200, 246, 440, 490, 616
TspGWI	ACGGA	1 cut(s)	635
TspRI	CASTG	1 cut(s)	483
VpaK11BI	GGWCC	1 cut(s)	643
XapI	RAATTY	3 cut(s)	447, 593, 623
XbaI	TCTAGA	1 cut(s)	443
XceI	RCATGY	2 cut(s)	30, 441
XhoI	CTCGAG	1 cut(s)	172
XspI	CTAG	1 cut(s)	444
Zsp2I	ATGCAT	3 cut(s)	6, 393, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.