pycom11g12290

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000569
Physical Location & Seq
Reverse (-)
11220112 .. 11227721
7610 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g12290.2

Sequence Viewer

Length: 315 bp
ATGAAATCTACGGCGGCGACTTTAAACTCGAACCCATATCTCAGAATTTTGCAGCTGAGAGTTTCATTTTTTCTGTGTTTTCTTCTCATAAAGCTTTCTTTATGCGCTGATAAATATAGCAGAGATGACTTCCCTCCAGGCTTCGTGTTTGGTGCTTCCTCCTCTGCTTATCAGGTGGAAGGTGCTGCAGACCAAGACGGAAGGACCGCAAGCATCTTGGACACATATACTCATGCTGGTAAATATGATGGAGCTACTGGAGATGTAGCGTGTGATCAGTATCACAAATACAAGTTCAGGAAGATGTCCAACTAA

Protein Analysis

105

Amino Acids

11.55

Weight (kDa)

8.45

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 14, 207
AcsI RAATTY 1 cut(s) 45
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 3 cut(s) 55, 94, 254
AluI AGCT 3 cut(s) 55, 94, 254
ApeKI GCWGC 2 cut(s) 52, 185
ApoI RAATTY 1 cut(s) 45
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 204
AvaII GGWCC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 64, 172
BccI CCATC 1 cut(s) 242
BceAI ACGGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 138
BclI TGATCA 1 cut(s) 274
BfmI CTRYAG 1 cut(s) 186
BisI GCNGC 3 cut(s) 15, 53, 186
BlsI GCNGC 3 cut(s) 16, 54, 187
Bme1390I CCNGG 1 cut(s) 138
Bme18I GGWCC 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 222
BpmI CTGGAG 2 cut(s) 120, 279
BsaBI GATNNNNATC 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 262
Bse8I GATNNNNATC 1 cut(s) 279
BseBI CCWGG 1 cut(s) 138
BseJI GATNNNNATC 1 cut(s) 279
BseMII CTCAG 2 cut(s) 47, 55
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 1 cut(s) 151
BseXI GCAGC 2 cut(s) 64, 172
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 2 cut(s) 14, 207
BspCNI CTCAG 2 cut(s) 48, 54
BspMAI CTGCAG 1 cut(s) 190
BsrI ACTGG 1 cut(s) 262
BssMI GATC 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 2 cut(s) 41, 56
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 64, 172
Cac8I GCNNGC 1 cut(s) 211
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 204
CviAII CATG 1 cut(s) 233
CviJI RGCY 4 cut(s) 55, 94, 141, 254
CviKI_1 RGCY 4 cut(s) 55, 94, 141, 254
DdeI CTNAG 2 cut(s) 41, 56
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
DraI TTTAAA 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 136
FaeI CATG 1 cut(s) 236
FaiI YATR 8 cut(s) 37, 89, 103, 117, 226, 228, 234, 246
FatI CATG 1 cut(s) 232
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 15, 53, 186
Fsp4HI GCNGC 3 cut(s) 15, 53, 186
GlaI GCGC 1 cut(s) 106
GluI GCNGC 3 cut(s) 15, 53, 186
GsuI CTGGAG 2 cut(s) 120, 279
HhaI GCGC 1 cut(s) 107
Hin1II CATG 1 cut(s) 236
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 1 cut(s) 298
HpyAV CCTTC 2 cut(s) 173, 195
HpyCH4V TGCA 2 cut(s) 52, 188
HpyF3I CTNAG 2 cut(s) 41, 56
Hsp92II CATG 1 cut(s) 236
HspAI GCGC 1 cut(s) 105
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 251
LpnPI CCDG 6 cut(s) 123, 150, 158, 222, 243, 283
Lsp1109I GCAGC 2 cut(s) 64, 172
LweI GCATC 1 cut(s) 222
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 2 cut(s) 74, 313
MluCI AATT 1 cut(s) 45
MnlI CCTC 3 cut(s) 144, 169, 172
MseI TTAA 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 55
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
NdeII GATC 1 cut(s) 274
NlaIII CATG 1 cut(s) 236
PkrI GCNGC 3 cut(s) 16, 54, 187
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspPI GGNCC 1 cut(s) 204
PstI CTGCAG 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 55
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 3 cut(s) 15, 53, 186
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 1 cut(s) 204
ScrFI CCNGG 1 cut(s) 138
SetI ASST 5 cut(s) 57, 96, 177, 184, 256
SfaNI GCATC 1 cut(s) 222
SfcI CTRYAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 204
Sse9I AATT 1 cut(s) 45
SsiI CCGC 2 cut(s) 14, 207
StyD4I CCNGG 1 cut(s) 136
TaqI TCGA 1 cut(s) 29
TasI AATT 1 cut(s) 45
TauI GCSGC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TseI GCWGC 2 cut(s) 52, 185
TspDTI ATGAA 2 cut(s) 17, 54
TspGWI ACGGA 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 204
XapI RAATTY 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.