Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8273911.1

Orthogroup ID

OG0000569

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 779

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8273911.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 389 bp

atgaaaaagaatgcaggcactagaattccaacgttcaccagtgctgagtcttcaaaggtcaagggttccttcgacttcattggacttaattactataacacattgtatgccagtgacaactctgccgcattaaacattcaaaacagagactatgtagcggattcggcaacccagatttctcctttggattacaatacatcaacgttggagtttccgataacaccttggggtatggaaggactgttggaatatatcaaacaacactacggcaatcctcccttatatatccatgaaaatggccaacaaactcgacgtaattcttcgttggaagattggtccagaattgaatatttgcatggacacgttcacagtttgcttaatgttataag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko00460 ko00500 ko00940 ko01100 ko01110 ko01120 map00230 map00460 map00500 map00940 map01100 map01110 map01120

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

129

Amino Acids

14.66

Weight (kDa)

5.9

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G60090 AT1G60090 AT1G60270 AT1G60270 AT4G22100 AT5G16580
fragaria_vesca	FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420
malus_domestica	MD11G1150300.v1.1 MD11G1150400.v1.1 MD11G1150500.v1.1 MD11G1150800.v1.1 MD11G1151000.v1.1 MD11G1151200.v1.1
prunus_persica	Prupe.6G156200_v2.0.a1 Prupe.6G156200_v2.0.a1 Prupe.6G156400_v2.0.a1 Prupe.6G156500_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1
pyrus_communis	pycom11g12280 pycom11g12290 pycom11g12310
rosa_chinensis	RchiOBHm_Chr5g0041221 RchiOBHm_Chr5g0041231 RchiOBHm_Chr5g0041251 RchiOBHm_Chr7g0234981
rosa_laevigata	RLG00000001188 RLG00000034038 RLG00000034040 RLG00000034043
rosa_multiflora	Rmu_co8273911.1_g000001 Rmu_sc0003502.1_g000015 Rmu_sc0005650.1_g000002 Rmu_sc0007703.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039370 Rroxscaffold_1G00039400 Rroxscaffold_3G00226380
rosa_rugosa	Rorug05G0190700 Rorug05G0190800 Rorug07G0286800
rosa_samantha	Rh3BG326300 Rh5AG276800 Rh5AG277000 Rh5BG281700 Rh5BG281800 Rh5CG285800 Rh5CG313900 Rh5CG314000 Rh5DG289900 Rh5DG290100 Rh5DG290300 Rh7AG441700 Rh7DG431300
rosa_wichuraiana	Rw5G026030 Rw5G026040 Rw7G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
AciI	CCGC	2 cut(s)	126, 158
AclI	AACGTT	2 cut(s)	32, 203
AcoI	YGGCCR	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	24
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	3 cut(s)	54, 140, 347
Alw26I	GTCTC	1 cut(s)	141
AoxI	GGCC	1 cut(s)	298
ApoI	RAATTY	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	336
BalI	TGGCCA	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	21
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	224
Bse1I	ACTGG	2 cut(s)	39, 111
BseDI	CCNNGG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	39, 111
BshFI	GGCC	1 cut(s)	300
BsmAI	GTCTC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	300
BspACI	CCGC	2 cut(s)	126, 158
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	67
BsrI	ACTGG	2 cut(s)	39, 111
BssECI	CCNNGG	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	243, 371
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	42
BstXI	CCANNNNNNTGG	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	46, 118
Cac8I	GCNNGC	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	336
CviAII	CATG	2 cut(s)	290, 356
CviJI	RGCY	1 cut(s)	300
CviKI_1	RGCY	1 cut(s)	300
DdeI	CTNAG	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	336
EcoRI	GAATTC	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	2 cut(s)	293, 359
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	2 cut(s)	289, 355
Fnu4HI	GCNGC	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	293, 359
HinfI	GANTC	2 cut(s)	47, 161
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	2 cut(s)	36, 367
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	1 cut(s)	339
Hpy8I	GTNNAC	2 cut(s)	36, 367
Hpy99I	CGWCG	1 cut(s)	315
HpyAV	CCTTC	2 cut(s)	79, 230
HpyCH4III	ACNGT	2 cut(s)	243, 371
HpyCH4IV	ACGT	4 cut(s)	32, 203, 313, 363
HpyCH4V	TGCA	2 cut(s)	14, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	4 cut(s)	32, 203, 313, 363
Hsp92II	CATG	2 cut(s)	293, 359
LpnPI	CCDG	4 cut(s)	52, 124, 185, 352
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	4 cut(s)	32, 203, 313, 363
MaeIII	GTNAC	1 cut(s)	113
MboII	GAAGA	3 cut(s)	42, 312, 341
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	4 cut(s)	24, 88, 316, 342
MluNI	TGGCCA	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	4 cut(s)	53, 186, 225, 306
MnlI	CCTC	1 cut(s)	285
Mox20I	TGGCCA	1 cut(s)	300
MscI	TGGCCA	1 cut(s)	300
MseI	TTAA	3 cut(s)	87, 131, 378
MslI	CAYNNNNRTG	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	16
MwoI	GCNNNNNNNGC	1 cut(s)	164
NlaIII	CATG	2 cut(s)	293, 359
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	113
PctI	GAATGC	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PsiI	TTATAA	1 cut(s)	386
Psp1406I	AACGTT	2 cut(s)	32, 203
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	87, 131, 378
SatI	GCNGC	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	336
SchI	GAGTC	1 cut(s)	56
SetI	ASST	6 cut(s)	35, 60, 206, 226, 316, 366
SinI	GGWCC	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	294
Sse9I	AATT	4 cut(s)	24, 88, 316, 342
SsiI	CCGC	2 cut(s)	126, 158
SspI	AATATT	1 cut(s)	350
SspMI	CTAG	1 cut(s)	21
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	2 cut(s)	243, 371
TaiI	ACGT	4 cut(s)	35, 206, 316, 366
TaqI	TCGA	2 cut(s)	72, 310
TasI	AATT	4 cut(s)	24, 88, 316, 342
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	3 cut(s)	87, 131, 378
Tru9I	TTAA	3 cut(s)	87, 131, 378
TscAI	CASTG	2 cut(s)	46, 118
TseFI	GTSAC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	3 cut(s)	17, 67, 306
TspRI	CASTG	2 cut(s)	46, 118
VpaK11BI	GGWCC	1 cut(s)	336
XapI	RAATTY	1 cut(s)	24
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.