Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005650.1

Orthogroup ID

OG0000569

Physical Location & Seq

Genomic Coordinates Forward (+)

8966 .. 10824

Gene Structure 1859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005650.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgcgggaatccaacctcatgttacatactttacaccacagtgatctcccacaggcactcgacgatgagtatggagtatgggttagcccacagattgtaaaagacttcactgcatatgcaaatgtttgcttcgaacagtttggcgatcgagttgggcattggactactatggatgaaccaaatgtatttgtactcggtggttatgatattggattccttccaccacaacggtgctcagctccttttggttttaattgctcgaggggtaactccacaactgagccatacttggcaattcataatatcttggtatctcatgcaacagctgctgcactctacaagcatacctaccagcacaagcagcgtgggtttataggcgtcattctattttcccattggtttattcctcgaaccaaaacccatcaagaccaagttgctgctcaaagagctctcgacttctattttggttgggttatgcatcctttggtgtttggagagtaccctcaagtaatgaaaaaggatgcatgctctagaattccaacgttcacccgtgctgagtctacacaggtcaagggtcaacgaactcgacggaattcatcattggaggattggtccagaatagaatacttgcatggacacattcaccgtttgcttaatgttataaggtatgcagctagctacatcctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko00460 ko00500 ko00940 ko01100 ko01110 ko01120 map00230 map00460 map00500 map00940 map01100 map01110 map01120

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

229

Amino Acids

26.43

Weight (kDa)

8.34

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G60090 AT1G60090 AT1G60270 AT1G60270 AT4G22100 AT5G16580
fragaria_vesca	FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420
malus_domestica	MD11G1150300.v1.1 MD11G1150400.v1.1 MD11G1150500.v1.1 MD11G1150800.v1.1 MD11G1151000.v1.1 MD11G1151200.v1.1
prunus_persica	Prupe.6G156200_v2.0.a1 Prupe.6G156200_v2.0.a1 Prupe.6G156400_v2.0.a1 Prupe.6G156500_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1
pyrus_communis	pycom11g12280 pycom11g12290 pycom11g12310
rosa_chinensis	RchiOBHm_Chr5g0041221 RchiOBHm_Chr5g0041231 RchiOBHm_Chr5g0041251 RchiOBHm_Chr7g0234981
rosa_laevigata	RLG00000001188 RLG00000034038 RLG00000034040 RLG00000034043
rosa_multiflora	Rmu_co8273911.1_g000001 Rmu_sc0003502.1_g000015 Rmu_sc0005650.1_g000002 Rmu_sc0007703.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039370 Rroxscaffold_1G00039400 Rroxscaffold_3G00226380
rosa_rugosa	Rorug05G0190700 Rorug05G0190800 Rorug07G0286800
rosa_samantha	Rh3BG326300 Rh5AG276800 Rh5AG277000 Rh5BG281700 Rh5BG281800 Rh5CG285800 Rh5CG313900 Rh5CG314000 Rh5DG289900 Rh5DG290100 Rh5DG290300 Rh7AG441700 Rh7DG431300
rosa_wichuraiana	Rw5G026030 Rw5G026040 Rw7G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	662
AccI	GTMKAC	1 cut(s)	560
AciI	CCGC	1 cut(s)	4
AclI	AACGTT	1 cut(s)	542
AcsI	RAATTY	2 cut(s)	534, 592
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	2 cut(s)	192, 500
AjuI	GAANNNNNNNTTGG	2 cut(s)	584, 616
AleI	CACNNNNGTG	2 cut(s)	39, 229
AluBI	AGCT	5 cut(s)	239, 326, 449, 674, 678
AluI	AGCT	5 cut(s)	239, 326, 449, 674, 678
Alw21I	GWGCWC	2 cut(s)	236, 451
AlwNI	CAGNNNCTG	1 cut(s)	329
Ama87I	CYCGRG	1 cut(s)	259
ApeKI	GCWGC	5 cut(s)	326, 329, 361, 437, 671
ApoI	RAATTY	2 cut(s)	534, 592
ArsI	GACNNNNNNTTYG	2 cut(s)	446, 478
AspS9I	GGNCC	1 cut(s)	612
AsuHPI	GGTGA	2 cut(s)	538, 635
AsuII	TTCGAA	1 cut(s)	132
AsuNHI	GCTAGC	1 cut(s)	674
AvaI	CYCGRG	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	612
BanII	GRGCYC	1 cut(s)	451
Bbv12I	GWGCWC	2 cut(s)	236, 451
BbvI	GCAGC	5 cut(s)	313, 316, 373, 424, 683
BccI	CCATC	1 cut(s)	429
BfaI	CTAG	2 cut(s)	531, 675
BisI	GCNGC	5 cut(s)	327, 330, 362, 438, 672
BlpI	GCTNAGC	1 cut(s)	235
BlsI	GCNGC	5 cut(s)	328, 331, 363, 439, 673
Bme18I	GGWCC	1 cut(s)	612
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	612
BmsI	GCATC	2 cut(s)	487, 511
BmtI	GCTAGC	1 cut(s)	678
Bpu1102I	GCTNAGC	1 cut(s)	235
Bpu14I	TTCGAA	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	489
BsaHI	GRCGYC	1 cut(s)	378
BsaXI	ACNNNNNCTCC	4 cut(s)	66, 96, 596, 626
BseGI	GGATG	4 cut(s)	178, 478, 526, 681
BseMII	CTCAG	3 cut(s)	249, 270, 546
BseXI	GCAGC	5 cut(s)	313, 316, 373, 424, 683
BsgI	GTGCAG	1 cut(s)	315
Bsh1285I	CGRYCG	1 cut(s)	148
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	2 cut(s)	236, 451
BsiHKCI	CYCGRG	1 cut(s)	259
BsoBI	CYCGRG	1 cut(s)	259
Bsp119I	TTCGAA	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	236, 451
Bsp143I	GATC	2 cut(s)	43, 145
Bsp1720I	GCTNAGC	1 cut(s)	235
BspACI	CCGC	1 cut(s)	4
BspCNI	CTCAG	3 cut(s)	248, 271, 547
BspOI	GCTAGC	1 cut(s)	678
BspT104I	TTCGAA	1 cut(s)	132
BssMI	GATC	2 cut(s)	43, 145
BssNI	GRCGYC	1 cut(s)	378
Bst4CI	ACNGT	4 cut(s)	41, 138, 231, 647
BstACI	GRCGYC	1 cut(s)	378
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	526, 676
BstDEI	CTNAG	3 cut(s)	235, 279, 555
BstF5I	GGATG	4 cut(s)	178, 478, 526, 681
BstKTI	GATC	2 cut(s)	46, 148
BstMBI	GATC	2 cut(s)	43, 145
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 361, 446
BstNSI	RCATGY	1 cut(s)	528
BstV1I	GCAGC	5 cut(s)	313, 316, 373, 424, 683
BtsCI	GGATG	4 cut(s)	178, 478, 526, 681
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	2 cut(s)	46, 108
Cac8I	GCNNGC	2 cut(s)	526, 676
CaiI	CAGNNNCTG	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	612
CseI	GACGC	1 cut(s)	367
Csp6I	GTAC	2 cut(s)	191, 499
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	4 cut(s)	19, 317, 525, 632
CviJI	RGCY	7 cut(s)	87, 239, 283, 326, 449, 674, 678
CviKI_1	RGCY	7 cut(s)	87, 239, 283, 326, 449, 674, 678
CviQI	GTAC	2 cut(s)	191, 499
DdeI	CTNAG	3 cut(s)	235, 279, 555
DpnI	GATC	2 cut(s)	45, 147
DpnII	GATC	2 cut(s)	43, 145
Ecl136II	GAGCTC	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	612
Eco53kI	GAGCTC	1 cut(s)	449
Eco88I	CYCGRG	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	449
EcoRI	GAATTC	2 cut(s)	534, 592
EcoT22I	ATGCAT	2 cut(s)	480, 526
EcoT38I	GRGCYC	1 cut(s)	451
FaeI	CATG	4 cut(s)	22, 320, 528, 635
FatI	CATG	4 cut(s)	18, 316, 524, 631
FauNDI	CATATG	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	560
Fnu4HI	GCNGC	5 cut(s)	327, 330, 362, 438, 672
FokI	GGATG	4 cut(s)	185, 465, 533, 668
FriOI	GRGCYC	1 cut(s)	451
Fsp4HI	GCNGC	5 cut(s)	327, 330, 362, 438, 672
FspBI	CTAG	2 cut(s)	531, 675
GluI	GCNGC	5 cut(s)	327, 330, 362, 438, 672
HgaI	GACGC	1 cut(s)	367
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	4 cut(s)	22, 320, 528, 635
HincII	GTYRAC	1 cut(s)	578
HindII	GTYRAC	1 cut(s)	578
HinfI	GANTC	3 cut(s)	8, 213, 557
HphI	GGTGA	2 cut(s)	538, 635
Hpy166II	GTNNAC	3 cut(s)	546, 561, 578
Hpy188III	TCNNGA	4 cut(s)	425, 452, 531, 615
Hpy8I	GTNNAC	3 cut(s)	546, 561, 578
Hpy99I	CGWCG	2 cut(s)	65, 591
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	4 cut(s)	41, 138, 231, 647
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	8 cut(s)	113, 119, 320, 332, 478, 524, 631, 671
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 361, 446
HpyF3I	CTNAG	3 cut(s)	235, 279, 555
HpySE526I	ACGT	1 cut(s)	542
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	4 cut(s)	22, 320, 528, 635
Kzo9I	GATC	2 cut(s)	43, 145
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	4 cut(s)	38, 365, 551, 628
Lsp1109I	GCAGC	5 cut(s)	313, 316, 373, 424, 683
LweI	GCATC	2 cut(s)	487, 511
MaeI	CTAG	2 cut(s)	531, 675
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	2 cut(s)	21, 266
MalI	GATC	2 cut(s)	45, 147
MboI	GATC	2 cut(s)	43, 145
MhlI	GDGCHC	2 cut(s)	236, 451
MluCI	AATT	4 cut(s)	253, 294, 534, 592
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	2 cut(s)	36, 563
MnlI	CCTC	5 cut(s)	26, 255, 417, 513, 598
Mph1103I	ATGCAT	2 cut(s)	480, 526
MseI	TTAA	2 cut(s)	252, 654
MslI	CAYNNNNRTG	2 cut(s)	39, 229
MspA1I	CMGCKG	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	326, 361, 446
NdeI	CATATG	1 cut(s)	115
NdeII	GATC	2 cut(s)	43, 145
NheI	GCTAGC	1 cut(s)	674
NlaIII	CATG	4 cut(s)	22, 320, 528, 635
NsiI	ATGCAT	2 cut(s)	480, 526
NspI	RCATGY	1 cut(s)	528
NspV	TTCGAA	1 cut(s)	132
OliI	CACNNNNGTG	2 cut(s)	39, 229
PaeI	GCATGC	1 cut(s)	528
PaeR7I	CTCGAG	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	8, 213
PkrI	GCNGC	5 cut(s)	328, 331, 363, 439, 673
Ple19I	CGATCG	1 cut(s)	148
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PsiI	TTATAA	1 cut(s)	662
Psp124BI	GAGCTC	1 cut(s)	451
Psp1406I	AACGTT	1 cut(s)	542
PspPI	GGNCC	1 cut(s)	612
PspXI	VCTCGAGB	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	329
PvuI	CGATCG	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	2 cut(s)	192, 500
RsaNI	GTAC	2 cut(s)	191, 499
RseI	CAYNNNNRTG	2 cut(s)	39, 229
SacI	GAGCTC	1 cut(s)	451
SaqAI	TTAA	2 cut(s)	252, 654
SatI	GCNGC	5 cut(s)	327, 330, 362, 438, 672
Sau3AI	GATC	2 cut(s)	43, 145
Sau96I	GGNCC	1 cut(s)	612
SchI	GAGTC	1 cut(s)	566
SduI	GDGCHC	2 cut(s)	236, 451
SfaNI	GCATC	2 cut(s)	487, 511
Sfr274I	CTCGAG	1 cut(s)	259
SfuI	TTCGAA	1 cut(s)	132
SinI	GGWCC	1 cut(s)	612
SlaI	CTCGAG	1 cut(s)	259
SmiMI	CAYNNNNRTG	2 cut(s)	39, 229
SmlI	CTYRAG	2 cut(s)	259, 504
SmoI	CTYRAG	2 cut(s)	259, 504
SphI	GCATGC	1 cut(s)	528
Sse9I	AATT	4 cut(s)	253, 294, 534, 592
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	531, 675
SstI	GAGCTC	1 cut(s)	451
TaaI	ACNGT	4 cut(s)	41, 138, 231, 647
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	7 cut(s)	60, 132, 148, 260, 409, 453, 586
TasI	AATT	4 cut(s)	253, 294, 534, 592
TatI	WGTACW	1 cut(s)	190
TfiI	GAWTC	2 cut(s)	8, 213
Tru1I	TTAA	2 cut(s)	252, 654
Tru9I	TTAA	2 cut(s)	252, 654
TscAI	CASTG	2 cut(s)	46, 115
TseI	GCWGC	5 cut(s)	326, 329, 361, 437, 671
TspDTI	ATGAA	4 cut(s)	189, 287, 527, 585
TspGWI	ACGGA	1 cut(s)	604
TspRI	CASTG	2 cut(s)	46, 115
VpaK11BI	GGWCC	1 cut(s)	612
XapI	RAATTY	2 cut(s)	534, 592
XbaI	TCTAGA	1 cut(s)	530
XceI	RCATGY	1 cut(s)	528
XhoI	CTCGAG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	560
XspI	CTAG	2 cut(s)	531, 675
Zsp2I	ATGCAT	2 cut(s)	480, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.