AT1G02850

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
630374 .. 633420
3047 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02850.5

Sequence Viewer

Length: 1413 bp
ATGAAGTTATTGAGCAATAGTCTAATGTTCCTTCCTCTGCTGGCTTTGGCTTTAACCGCAGTTTCGTCGCTTAAATACAGCAGAAATGACTTCCCTCCAGGCTTTGTCTTTGGCTCTGGCACATCAGCTTATCAGGTGGAAGGAGCTGCTGACGAAGATGGGAGAACTCCTAGCATTTGGGATGTTTTTGCTCATGCCGGACACTCCGGAGTAGCAGCTGGAAATGTTGCATGTGACCAGTATCACAAATACAAGGAAGATGTGAAGCTCATGGCAGACATGGGATTGGAGGCTTACAGATTCTCTATATCCTGGTCAAGGCTTTTACCAAGTGGAAGAGGACCAATCAATCCCAAGGGGCTACAATACTACAACAATCTTATTGATGAATTGATCACTCATGGAATCCAGCCACATGTTACATTGCACCACTTTGATCTCCCACAGGCCTTAGAAGATGAGTATGGAGGTTGGCTCAGCCAAGAAATCGTGAGAGACTTCACAGCTTATGCAGATACTTGCTTCAAGGAGTTTGGAGATAGAGTGTCACATTGGACTACTATAAACGAGGTCAATGTGTTTGCCCTTGGAGGGTATGACCAGGGAATAACACCGCCTGCTCGATGCTCTCCTCCATTTGGACTTAATTGTACCAAAGGAAACTCTTCCATTGAGCCTTACATTGCCGTACACAACATGTTGCTCGCACACGCTTCTGCAACAATCTTATACAAGCAACAGTACAAGGCAACAGCTAGAGTGAATGACTTCTATATTGGTTGGATTTTACATCCGTTGGTGTTTGGTGATTATCCTGAGACGATGAAGACCAATGTTGGGTCTAGATTGCCAGCTTTTACAGAGGAGGAGTCAGAACAAGTTAAAGGCGCATTTGATTTCGTTGGAGTGATAAATTACATGGCGCTTTATGTCAAAGACAACTCTTCCTCTCTGAAACCTAATCTCCAGGATTTCAACACAGATATAGCCGTGGAAATGACCTTGGTTGGAAACACATCAATCGAGAATGAGTATGCAAATACACCATGGAGTCTGCAACAGATACTTTTGTATGTCAAAGAAACTTATGGAAACCCTCCTGTCTATATCCTAGAGAATGGACAAATGACTCCTCACAGCTCATCACTTGTGGACACAACAAGGGTGAAGTATCTGAGCTCGTACATTAAAGCAGTGCTTCATTCACTCAGGAAAGGATCGGACGTAAAAGGGTATTTTCAGTGGTCGTTGATGGATGTGTTTGAGCTATTTGGTGGGTACGAGAGGAGCTTTGGATTATTGTACGTGGACTTCAAGGATCCTTCTCTTAAGAGGAGCCCTAAACTCTCTGCTCACTGGTACTCTTCCTTCCTCAAGGGAACACTGCACCATCCATCATATGCTTCGTCTTGA

Protein Analysis

470

Amino Acids

52.58

Weight (kDa)

5.8

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 28 - 509 2.3e-141 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 206
AciI CCGC 2 cut(s) 57, 614
AclWI GGATC 3 cut(s) 1225, 1313, 1326
AfaI GTAC 7 cut(s) 652, 690, 743, 1184, 1280, 1304, 1361
AfiI CCNNNNNNNGG 4 cut(s) 318, 591, 638, 837
AflII CTTAAG 1 cut(s) 1328
AflIII ACRYGT 2 cut(s) 415, 696
AgsI TTSAA 3 cut(s) 526, 976, 1315
AjnI CCWGG 4 cut(s) 97, 311, 600, 966
Alw21I GWGCWC 1 cut(s) 1181
Alw26I GTCTC 2 cut(s) 489, 812
AlwI GGATC 3 cut(s) 1225, 1313, 1326
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 2 cut(s) 146, 215
Asp700I GAANNNNTTC 2 cut(s) 664, 767
AspLEI GCGC 2 cut(s) 890, 925
AspS9I GGNCC 1 cut(s) 341
AsuHPI GGTGA 2 cut(s) 818, 1177
AvaII GGWCC 1 cut(s) 341
BaeI ACNNNNGTAYC 2 cut(s) 1055, 1088
BamHI GGATCC 1 cut(s) 1318
BanII GRGCYC 2 cut(s) 1181, 1340
BarI GAAGNNNNNNTAC 4 cut(s) 1295, 1327, 1352, 1384
BbsI GAAGAC 1 cut(s) 833
Bbv12I GWGCWC 1 cut(s) 1181
BbvI GCAGC 2 cut(s) 133, 227
BccI CCATC 4 cut(s) 152, 1246, 1398, 1402
BceAI ACGGC 2 cut(s) 671, 974
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BciT130I CCWGG 4 cut(s) 99, 313, 602, 968
BclI TGATCA 1 cut(s) 393
BcoDI GTCTC 2 cut(s) 489, 812
BfaI CTAG 4 cut(s) 171, 756, 843, 1112
BfoI RGCGCY 1 cut(s) 926
BfrI CTTAAG 1 cut(s) 1328
BisI GCNGC 2 cut(s) 147, 216
BlpI GCTNAGC 1 cut(s) 476
BlsI GCNGC 2 cut(s) 148, 217
Bme1390I CCNGG 4 cut(s) 99, 313, 602, 968
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 341
BmiI GGNNCC 2 cut(s) 1320, 1337
BmrFI CCNGG 4 cut(s) 99, 313, 602, 968
BmsI GCATC 1 cut(s) 614
BpiI GAAGAC 1 cut(s) 833
BplI GAGNNNNNCTC 2 cut(s) 459, 491
BpmI CTGGAG 2 cut(s) 81, 950
Bpu1102I GCTNAGC 1 cut(s) 476
BpuEI CTTGAG 1 cut(s) 1358
BsaAI YACGTR 1 cut(s) 1306
BsaJI CCNNGG 6 cut(s) 354, 586, 601, 990, 1002, 1046
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 4 cut(s) 528, 558, 948, 978
Bsc4I CCNNNNNNNGG 4 cut(s) 318, 591, 638, 837
Bse1I ACTGG 2 cut(s) 238, 1361
Bse3DI GCAATG 2 cut(s) 422, 681
BseAI TCCGGA 1 cut(s) 206
BseBI CCWGG 4 cut(s) 99, 313, 602, 968
BseDI CCNNGG 6 cut(s) 354, 586, 601, 990, 1002, 1046
BseGI GGATG 4 cut(s) 187, 790, 1261, 1390
BseLI CCNNNNNNNGG 4 cut(s) 318, 591, 638, 837
BseMI GCAATG 2 cut(s) 422, 681
BseMII CTCAG 4 cut(s) 490, 807, 1166, 1222
BseNI ACTGG 2 cut(s) 238, 1361
BseRI GAGGAG 6 cut(s) 621, 878, 881, 1122, 1300, 1348
BseXI GCAGC 2 cut(s) 133, 227
BsgI GTGCAG 1 cut(s) 1370
BshFI GGCC 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 1181
BsiSI CCGG 2 cut(s) 198, 207
BslI CCNNNNNNNGG 4 cut(s) 318, 591, 638, 837
BsmAI GTCTC 2 cut(s) 489, 812
BsmBI CGTCTC 1 cut(s) 812
BsnI GGCC 1 cut(s) 449
Bsp1286I GDGCHC 2 cut(s) 1181, 1340
Bsp13I TCCGGA 1 cut(s) 206
Bsp143I GATC 4 cut(s) 393, 436, 1217, 1318
Bsp1720I GCTNAGC 1 cut(s) 476
Bsp19I CCATGG 1 cut(s) 1046
BspACI CCGC 2 cut(s) 57, 614
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 4 cut(s) 489, 808, 1167, 1221
BspEI TCCGGA 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 1320, 1337
BspPI GGATC 3 cut(s) 1225, 1313, 1326
BspTI CTTAAG 1 cut(s) 1328
BsrDI GCAATG 2 cut(s) 422, 681
BsrI ACTGG 2 cut(s) 238, 1361
BssECI CCNNGG 6 cut(s) 354, 586, 601, 990, 1002, 1046
BssMI GATC 4 cut(s) 393, 436, 1217, 1318
BssT1I CCWWGG 4 cut(s) 354, 586, 1002, 1046
Bst2UI CCWGG 4 cut(s) 99, 313, 602, 968
Bst4CI ACNGT 1 cut(s) 741
Bst6I CTCTTC 4 cut(s) 331, 670, 949, 1369
BstAFI CTTAAG 1 cut(s) 1328
BstBAI YACGTR 1 cut(s) 1306
BstC8I GCNNGC 4 cut(s) 42, 618, 705, 852
BstDEI CTNAG 5 cut(s) 451, 476, 816, 1175, 1208
BstDSI CCRYGG 2 cut(s) 990, 1046
BstENI CCTNNNNNAGG 1 cut(s) 316
BstF5I GGATG 4 cut(s) 187, 790, 1261, 1390
BstH2I RGCGCY 1 cut(s) 926
BstHHI GCGC 2 cut(s) 890, 925
BstKTI GATC 4 cut(s) 396, 439, 1220, 1321
BstMAI GTCTC 2 cut(s) 489, 812
BstMBI GATC 4 cut(s) 393, 436, 1217, 1318
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 4 cut(s) 99, 313, 602, 968
BstNSI RCATGY 3 cut(s) 234, 419, 700
BstSCI CCNGG 4 cut(s) 97, 311, 600, 966
BstV1I GCAGC 2 cut(s) 133, 227
BstV2I GAAGAC 1 cut(s) 833
BstX2I RGATCY 1 cut(s) 1318
BstYI RGATCY 1 cut(s) 1318
BsuRI GGCC 1 cut(s) 449
BtgI CCRYGG 2 cut(s) 990, 1046
BtsCI GGATG 4 cut(s) 187, 790, 1261, 1390
BtsI GCAGTG 2 cut(s) 1200, 1382
BtsIMutI CAGTG 4 cut(s) 1200, 1247, 1354, 1382
Cac8I GCNNGC 4 cut(s) 42, 618, 705, 852
CfoI GCGC 2 cut(s) 890, 925
Cfr13I GGNCC 1 cut(s) 341
Csp6I GTAC 7 cut(s) 651, 689, 742, 1183, 1279, 1303, 1360
CviAII CATG 9 cut(s) 194, 231, 271, 280, 401, 416, 697, 919, 1047
CviQI GTAC 7 cut(s) 651, 689, 742, 1183, 1279, 1303, 1360
DdeI CTNAG 5 cut(s) 451, 476, 816, 1175, 1208
DpnI GATC 4 cut(s) 395, 438, 1219, 1320
DpnII GATC 4 cut(s) 393, 436, 1217, 1318
Eam1104I CTCTTC 4 cut(s) 331, 670, 949, 1369
EarI CTCTTC 4 cut(s) 331, 670, 949, 1369
Ecl136II GAGCTC 1 cut(s) 1179
Eco130I CCWWGG 4 cut(s) 354, 586, 1002, 1046
Eco147I AGGCCT 1 cut(s) 449
Eco24I GRGCYC 2 cut(s) 1181, 1340
Eco47I GGWCC 1 cut(s) 341
Eco53kI GAGCTC 1 cut(s) 1179
EcoICRI GAGCTC 1 cut(s) 1179
EcoNI CCTNNNNNAGG 1 cut(s) 316
EcoRII CCWGG 4 cut(s) 97, 311, 600, 966
EcoT14I CCWWGG 4 cut(s) 354, 586, 1002, 1046
EcoT38I GRGCYC 2 cut(s) 1181, 1340
ErhI CCWWGG 4 cut(s) 354, 586, 1002, 1046
Esp3I CGTCTC 1 cut(s) 812
FaeI CATG 9 cut(s) 197, 234, 274, 283, 404, 419, 700, 922, 1050
FalI AAGNNNNNCTT 2 cut(s) 1182, 1214
FatI CATG 9 cut(s) 193, 230, 270, 279, 400, 415, 696, 918, 1046
FauNDI CATATG 1 cut(s) 1399
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 2 cut(s) 147, 216
FokI GGATG 4 cut(s) 194, 777, 1268, 1377
FriOI GRGCYC 2 cut(s) 1181, 1340
Fsp4HI GCNGC 2 cut(s) 147, 216
FspBI CTAG 4 cut(s) 171, 756, 843, 1112
GlaI GCGC 2 cut(s) 889, 924
GluI GCNGC 2 cut(s) 147, 216
GsuI CTGGAG 2 cut(s) 81, 950
HaeII RGCGCY 1 cut(s) 926
HaeIII GGCC 1 cut(s) 449
HapII CCGG 2 cut(s) 198, 207
HhaI GCGC 2 cut(s) 890, 925
Hin1II CATG 9 cut(s) 197, 234, 274, 283, 404, 419, 700, 922, 1050
Hin6I GCGC 2 cut(s) 888, 923
HinP1I GCGC 2 cut(s) 888, 923
HinfI GANTC 5 cut(s) 300, 405, 869, 1051, 1129
HpaII CCGG 2 cut(s) 198, 207
HphI GGTGA 2 cut(s) 818, 1177
Hpy166II GTNNAC 3 cut(s) 691, 1153, 1309
Hpy188I TCNGA 4 cut(s) 874, 954, 1176, 1222
Hpy188III TCNNGA 7 cut(s) 207, 490, 815, 843, 1024, 1210, 1410
Hpy8I GTNNAC 3 cut(s) 691, 1153, 1309
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 4 cut(s) 41, 134, 1332, 1378
HpyCH4III ACNGT 1 cut(s) 741
HpyCH4IV ACGT 2 cut(s) 1224, 1305
HpyCH4V TGCA 7 cut(s) 230, 427, 512, 719, 1037, 1057, 1387
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 5 cut(s) 451, 476, 816, 1175, 1208
HpySE526I ACGT 2 cut(s) 1224, 1305
Hsp92II CATG 9 cut(s) 197, 234, 274, 283, 404, 419, 700, 922, 1050
HspAI GCGC 2 cut(s) 888, 923
Kpn2I TCCGGA 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 4 cut(s) 393, 436, 1217, 1318
LmnI GCTCC 3 cut(s) 143, 1287, 1335
Lsp1109I GCAGC 2 cut(s) 133, 227
LweI GCATC 1 cut(s) 614
MaeI CTAG 4 cut(s) 171, 756, 843, 1112
MaeII ACGT 2 cut(s) 1224, 1305
MaeIII GTNAC 3 cut(s) 233, 418, 546
MalI GATC 4 cut(s) 395, 438, 1219, 1320
MboI GATC 4 cut(s) 393, 436, 1217, 1318
MboII GAAGA 8 cut(s) 167, 269, 348, 467, 657, 838, 936, 1356
MflI RGATCY 1 cut(s) 1318
MhlI GDGCHC 2 cut(s) 1181, 1340
MluCI AATT 3 cut(s) 389, 646, 913
MlyI GAGTC 3 cut(s) 878, 1060, 1123
MmeI TCCRAC 3 cut(s) 761, 883, 988
MroI TCCGGA 1 cut(s) 206
MroXI GAANNNNTTC 2 cut(s) 664, 767
MseI TTAA 6 cut(s) 53, 72, 645, 882, 1188, 1329
MspA1I CMGCKG 1 cut(s) 218
MspCI CTTAAG 1 cut(s) 1328
MspI CCGG 2 cut(s) 198, 207
MspR9I CCNGG 4 cut(s) 99, 313, 602, 968
MvaI CCWGG 4 cut(s) 99, 313, 602, 968
MwoI GCNNNNNNNGC 1 cut(s) 56
NcoI CCATGG 1 cut(s) 1046
NdeI CATATG 1 cut(s) 1399
NdeII GATC 4 cut(s) 393, 436, 1217, 1318
NlaIII CATG 9 cut(s) 197, 234, 274, 283, 404, 419, 700, 922, 1050
NlaIV GGNNCC 2 cut(s) 1320, 1337
NmuCI GTSAC 2 cut(s) 233, 546
NspI RCATGY 3 cut(s) 234, 419, 700
PceI AGGCCT 1 cut(s) 449
PciI ACATGT 2 cut(s) 415, 696
PdmI GAANNNNTTC 2 cut(s) 664, 767
PfeI GAWTC 2 cut(s) 300, 405
PfoI TCCNGGA 1 cut(s) 966
PkrI GCNGC 2 cut(s) 148, 217
PleI GAGTC 3 cut(s) 877, 1059, 1123
PpsI GAGTC 3 cut(s) 877, 1059, 1123
Ppu21I YACGTR 1 cut(s) 1306
PscI ACATGT 2 cut(s) 415, 696
Psp124BI GAGCTC 1 cut(s) 1181
Psp6I CCWGG 4 cut(s) 97, 311, 600, 966
PspGI CCWGG 4 cut(s) 97, 311, 600, 966
PspN4I GGNNCC 2 cut(s) 1320, 1337
PspPI GGNCC 1 cut(s) 341
PsuI RGATCY 1 cut(s) 1318
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 7 cut(s) 652, 690, 743, 1184, 1280, 1304, 1361
RsaNI GTAC 7 cut(s) 651, 689, 742, 1183, 1279, 1303, 1360
SacI GAGCTC 1 cut(s) 1181
SaqAI TTAA 6 cut(s) 53, 72, 645, 882, 1188, 1329
SatI GCNGC 2 cut(s) 147, 216
Sau3AI GATC 4 cut(s) 393, 436, 1217, 1318
Sau96I GGNCC 1 cut(s) 341
SchI GAGTC 3 cut(s) 878, 1060, 1123
ScrFI CCNGG 4 cut(s) 99, 313, 602, 968
SduI GDGCHC 2 cut(s) 1181, 1340
SfaNI GCATC 1 cut(s) 614
SinI GGWCC 1 cut(s) 341
SmlI CTYRAG 2 cut(s) 1328, 1373
SmoI CTYRAG 2 cut(s) 1328, 1373
Sse9I AATT 3 cut(s) 389, 646, 913
SseBI AGGCCT 1 cut(s) 449
SsiI CCGC 2 cut(s) 57, 614
SspMI CTAG 4 cut(s) 171, 756, 843, 1112
SstI GAGCTC 1 cut(s) 1181
StuI AGGCCT 1 cut(s) 449
StyD4I CCNGG 4 cut(s) 97, 311, 600, 966
StyI CCWWGG 4 cut(s) 354, 586, 1002, 1046
TaaI ACNGT 1 cut(s) 741
TaiI ACGT 2 cut(s) 1227, 1308
TaqI TCGA 2 cut(s) 622, 1023
TasI AATT 3 cut(s) 389, 646, 913
TatI WGTACW 1 cut(s) 741
TfiI GAWTC 2 cut(s) 300, 405
Tru1I TTAA 6 cut(s) 53, 72, 645, 882, 1188, 1329
Tru9I TTAA 6 cut(s) 53, 72, 645, 882, 1188, 1329
TscAI CASTG 4 cut(s) 1200, 1247, 1361, 1389
TseFI GTSAC 2 cut(s) 233, 546
TseI GCWGC 2 cut(s) 146, 215
Tsp45I GTSAC 2 cut(s) 233, 546
TspDTI ATGAA 4 cut(s) 17, 402, 839, 1190
TspGWI ACGGA 1 cut(s) 783
TspRI CASTG 4 cut(s) 1200, 1247, 1361, 1389
Vha464I CTTAAG 1 cut(s) 1328
VpaK11BI GGWCC 1 cut(s) 341
XagI CCTNNNNNAGG 1 cut(s) 316
XbaI TCTAGA 1 cut(s) 842
XceI RCATGY 3 cut(s) 234, 419, 700
XmnI GAANNNNTTC 2 cut(s) 664, 767
XspI CTAG 4 cut(s) 171, 756, 843, 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.