Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000569

Physical Location & Seq

Genomic Coordinates Reverse (-)

14284125 .. 14284781

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1150400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAATCGAACCACATGCTACTTTACAGTGATCTCCCGCAGGCACTTGATGATGAGTATGGAGGATGGGTTAGTCGAAAAATTGTAAAAGACTTCACTGCATATGCAGATGCGTGCTTCAAAAATTTCGGGGATAGAGTTTTGCAATGGACTACTATTAATGAGCATAATGTTTTTATACTTGGGGGTTACGATGTTGGATTTCTTCCACCACAGCGATGTTCAGCTCCATTTGGTGTCAATTGTTCTAGGGGTAATTCCTCAACAGAGCCATACATAGCAGCTCATTATACCTTGTTAGCTCATGCATCAGCTGCTAGATTGTACAAGAAAATGTCCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko00460 ko00500 ko00940 ko01100 ko01110 ko01120 map00230 map00460 map00500 map00940 map01100 map01110 map01120

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

115

Amino Acids

12.76

Weight (kDa)

6.39

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	8 - 112	1.7e-25	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G60090 AT1G60090 AT1G60270 AT1G60270 AT4G22100 AT5G16580
fragaria_vesca	FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420
malus_domestica	MD11G1150300.v1.1 MD11G1150400.v1.1 MD11G1150500.v1.1 MD11G1150800.v1.1 MD11G1151000.v1.1 MD11G1151200.v1.1
prunus_persica	Prupe.6G156200_v2.0.a1 Prupe.6G156200_v2.0.a1 Prupe.6G156400_v2.0.a1 Prupe.6G156500_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1
pyrus_communis	pycom11g12280 pycom11g12290 pycom11g12310
rosa_chinensis	RchiOBHm_Chr5g0041221 RchiOBHm_Chr5g0041231 RchiOBHm_Chr5g0041251 RchiOBHm_Chr7g0234981
rosa_laevigata	RLG00000001188 RLG00000034038 RLG00000034040 RLG00000034043
rosa_multiflora	Rmu_co8273911.1_g000001 Rmu_sc0003502.1_g000015 Rmu_sc0005650.1_g000002 Rmu_sc0007703.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039370 Rroxscaffold_1G00039400 Rroxscaffold_3G00226380
rosa_rugosa	Rorug05G0190700 Rorug05G0190800 Rorug07G0286800
rosa_samantha	Rh3BG326300 Rh5AG276800 Rh5AG277000 Rh5BG281700 Rh5BG281800 Rh5CG285800 Rh5CG313900 Rh5CG314000 Rh5DG289900 Rh5DG290100 Rh5DG290300 Rh7AG441700 Rh7DG431300
rosa_wichuraiana	Rw5G026030 Rw5G026040 Rw7G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	121
AluBI	AGCT	5 cut(s)	227, 284, 302, 314, 342
AluI	AGCT	5 cut(s)	227, 284, 302, 314, 342
ApeKI	GCWGC	2 cut(s)	281, 314
ApoI	RAATTY	1 cut(s)	124
AseI	ATTAAT	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	293, 301
BccI	CCATC	1 cut(s)	60
BcgI	CGANNNNNNTGC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	249, 318
BisI	GCNGC	2 cut(s)	282, 315
BlsI	GCNGC	2 cut(s)	283, 316
BmsI	GCATC	2 cut(s)	100, 317
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bse3DI	GCAATG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	71
BseMI	GCAATG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	293, 301
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	152
BsrGI	TGTACA	1 cut(s)	324
BssMI	GATC	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstAUI	TGTACA	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	42, 115
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNSI	RCATGY	1 cut(s)	19
BstV1I	GCAGC	2 cut(s)	293, 301
BtgZI	GCGATG	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	71
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	34, 96
Cac8I	GCNNGC	2 cut(s)	42, 115
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	2 cut(s)	16, 305
CviJI	RGCY	6 cut(s)	227, 271, 284, 302, 314, 342
CviKI_1	RGCY	6 cut(s)	227, 271, 284, 302, 314, 342
CviQI	GTAC	1 cut(s)	325
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	310
FaeI	CATG	2 cut(s)	19, 308
FatI	CATG	2 cut(s)	15, 304
FauI	CCCGC	1 cut(s)	45
FauNDI	CATATG	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	282, 315
FokI	GGATG	1 cut(s)	78
Fsp4HI	GCNGC	2 cut(s)	282, 315
FspBI	CTAG	2 cut(s)	249, 318
GluI	GCNGC	2 cut(s)	282, 315
Hin1II	CATG	2 cut(s)	19, 308
HinfI	GANTC	1 cut(s)	5
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	4 cut(s)	101, 107, 145, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
Hsp92II	CATG	2 cut(s)	19, 308
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	1 cut(s)	26
Lsp1109I	GCAGC	2 cut(s)	293, 301
LweI	GCATC	2 cut(s)	100, 317
MaeI	CTAG	2 cut(s)	249, 318
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	197
MfeI	CAATTG	1 cut(s)	241
MluCI	AATT	4 cut(s)	81, 124, 241, 256
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	2 cut(s)	56, 271
Mph1103I	ATGCAT	1 cut(s)	310
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	217
MspA1I	CMGCKG	1 cut(s)	314
MunI	CAATTG	1 cut(s)	241
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeI	CATATG	1 cut(s)	103
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	2 cut(s)	19, 308
NsiI	ATGCAT	1 cut(s)	310
NspI	RCATGY	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	283, 316
PshBI	ATTAAT	1 cut(s)	159
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	2 cut(s)	282, 315
Sau3AI	GATC	1 cut(s)	31
SetI	ASST	6 cut(s)	229, 286, 296, 304, 316, 344
SfaNI	GCATC	2 cut(s)	100, 317
SmiMI	CAYNNNNRTG	1 cut(s)	217
Sse9I	AATT	4 cut(s)	81, 124, 241, 256
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	2 cut(s)	249, 318
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	2 cut(s)	8, 76
TasI	AATT	4 cut(s)	81, 124, 241, 256
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	2 cut(s)	34, 103
TseI	GCWGC	2 cut(s)	281, 314
TspRI	CASTG	2 cut(s)	34, 103
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	1 cut(s)	124
XceI	RCATGY	1 cut(s)	19
XspI	CTAG	2 cut(s)	249, 318
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.