Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000569

Physical Location & Seq

Genomic Coordinates Reverse (-)

14302676 .. 14311866

Gene Structure 9191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1150800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGTTGACTCGTAATTATGATGGAGCCACTGGAGATGTAGCGTGTGATCAGTATCACAAATACAAGGAAGATGTCCAACTAATGGTGGATACTGGTTTGGAGGCATATAGATTTTCCATCTCATGGTCAAGACTTATCCCATATGGAAGAGGACCTGTCAATCCAAAGGGTGTACAATATTACAACAATCTTATTGATGAACTGATCACCCATGGAATCGAACCACATGTTACTTTACACCACAGTGATCTCCCACAGGCACTTGATGATGAGTATGGAGGATGGGTTAGTCGAAAAATTGTAAAAGACTTCACTACATATGCAGATGCGTGCTTCAAAAATTTCGGGGATAGAGTTTTGCATTGGACTACTATGAATGAGCCTAATGTTTTTATACTTGGGGGTTACGATGTTGGATTTCTTCCACCACAGCGATGTTCTGCTCCATTTGGTGTCAATTGTTCTAGGGGTAATTCCTCAACAGAGCCATACATGGCAGCTCATTATACCTTGTTAGCTCATGCATCAGCTGCTAGATTGTACAAGAAAATGTACCAGGACAAGCAGCATGGATATATAGGAATCAATGTTTTTGCCTATTGGTTTGTTCCTCTAACAAAAACTATTGAAGATGAACTTGCCACCCAAAGAGCCATGGACTTCTACTTTGGTTGGGTTTTGAATCCCTTGGTGTTTGGAGATTACCCTGATGTAATGAAAAAGATAGTAGGCTCTAGAATTCCTGTTTTTACTAGTCTTGAGTCCCGAATTGTCAGGGGTTCATTTGACTTCATTGGATTGAATTATTATAACATATCAAACATCAAGGACTACTCCAGCACTTTAAAGATGGAAACCAGAGACTTTATGGCAGACTCAGCAATAAAGATATTGCCACTGGGCAATAGTACAACAACATATGAGTATGTAATATCTCCCTGGGGCCTGCAAGAACTGTTGGAATATATCAAGGAAAATTATGGCAATCCTCCTATATATATCCATGAAAATGGTCAACGGACTCGACGCGATTCATCTTTGGAGGACTCGGGGCGGGTGAAATTTTTGCAAGGGCACATCCAATCTTTGCTTGAAGCTATAAGGAATGGATCAAACTCAAGAGGTTATTTAACATGGTCCTTCTTGGATTCTCTTGAACTGTTAGACGGCTATGAATCGAGCTACGGCCTATACTACGTGGATTTGGAAGACCCTGATTTGAAAAGACAACCTAAACTCTCTGCTCATTGGTACTCTCATTTTCTAAAGAGAAAAAATGTCATCAACTTTGATGAAGTTCTTACATCCATTTCCAATGGTTACGACATTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko00460 ko00500 ko00940 ko01100 ko01110 ko01120 map00230 map00460 map00500 map00940 map01100 map01110 map01120

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

445

Amino Acids

50.98

Weight (kDa)

5.73

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	4 - 426	2.4e-125	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G60090 AT1G60090 AT1G60270 AT1G60270 AT4G22100 AT5G16580
fragaria_vesca	FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420
malus_domestica	MD11G1150300.v1.1 MD11G1150400.v1.1 MD11G1150500.v1.1 MD11G1150800.v1.1 MD11G1151000.v1.1 MD11G1151200.v1.1
prunus_persica	Prupe.6G156200_v2.0.a1 Prupe.6G156200_v2.0.a1 Prupe.6G156400_v2.0.a1 Prupe.6G156500_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1
pyrus_communis	pycom11g12280 pycom11g12290 pycom11g12310
rosa_chinensis	RchiOBHm_Chr5g0041221 RchiOBHm_Chr5g0041231 RchiOBHm_Chr5g0041251 RchiOBHm_Chr7g0234981
rosa_laevigata	RLG00000001188 RLG00000034038 RLG00000034040 RLG00000034043
rosa_multiflora	Rmu_co8273911.1_g000001 Rmu_sc0003502.1_g000015 Rmu_sc0005650.1_g000002 Rmu_sc0007703.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039370 Rroxscaffold_1G00039400 Rroxscaffold_3G00226380
rosa_rugosa	Rorug05G0190700 Rorug05G0190800 Rorug07G0286800
rosa_samantha	Rh3BG326300 Rh5AG276800 Rh5AG277000 Rh5BG281700 Rh5BG281800 Rh5CG285800 Rh5CG313900 Rh5CG314000 Rh5DG289900 Rh5DG290100 Rh5DG290300 Rh7AG441700 Rh7DG431300
rosa_wichuraiana	Rw5G026030 Rw5G026040 Rw7G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	810
AccB7I	CCANNNNNTGG	2 cut(s)	82, 123
AccII	CGCG	1 cut(s)	1029
AciI	CCGC	1 cut(s)	1054
AclWI	GGATC	1 cut(s)	1117
AcsI	RAATTY	3 cut(s)	340, 738, 1061
AfaI	GTAC	5 cut(s)	174, 542, 554, 910, 1253
AfiI	CCNNNNNNNGG	2 cut(s)	82, 123
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	7 cut(s)	337, 629, 682, 802, 1094, 1157, 1222
AhlI	ACTAGT	1 cut(s)	752
AjnI	CCWGG	2 cut(s)	555, 938
AleI	CACNNNNGTG	1 cut(s)	243
AluBI	AGCT	5 cut(s)	500, 518, 530, 1097, 1182
AluI	AGCT	5 cut(s)	500, 518, 530, 1097, 1182
Alw26I	GTCTC	1 cut(s)	855
AlwI	GGATC	1 cut(s)	1117
Ama87I	CYCGRG	1 cut(s)	1048
AoxI	GGCC	2 cut(s)	943, 1186
ApeKI	GCWGC	3 cut(s)	497, 530, 565
ApoI	RAATTY	3 cut(s)	340, 738, 1061
ArsI	GACNNNNNNTTYG	2 cut(s)	650, 682
AspS9I	GGNCC	3 cut(s)	152, 943, 1137
AsuHPI	GGTGA	2 cut(s)	199, 1069
AvaI	CYCGRG	1 cut(s)	1048
AvaII	GGWCC	2 cut(s)	152, 1137
BaeGI	GKGCMC	1 cut(s)	1077
BbsI	GAAGAC	1 cut(s)	1215
BbvI	GCAGC	3 cut(s)	509, 517, 577
BccI	CCATC	4 cut(s)	14, 125, 276, 844
BceAI	ACGGC	2 cut(s)	1183, 1201
BciT130I	CCWGG	2 cut(s)	557, 940
BciVI	GTATCC	1 cut(s)	82
BclI	TGATCA	2 cut(s)	46, 204
BcoDI	GTCTC	1 cut(s)	855
BcuI	ACTAGT	1 cut(s)	752
BfaI	CTAG	4 cut(s)	465, 534, 735, 753
BfuI	GTATCC	1 cut(s)	82
BisI	GCNGC	3 cut(s)	498, 531, 566
BlsI	GCNGC	3 cut(s)	499, 532, 567
Bme1390I	CCNGG	2 cut(s)	557, 940
Bme18I	GGWCC	2 cut(s)	152, 1137
BmeT110I	CYCGRG	1 cut(s)	1048
BmgT120I	GGNCC	3 cut(s)	152, 943, 1137
BmiI	GGNNCC	2 cut(s)	25, 944
BmrFI	CCNGG	2 cut(s)	557, 940
BmrI	ACTGGG	1 cut(s)	908
BmsI	GCATC	2 cut(s)	316, 533
BmuI	ACTGGG	1 cut(s)	908
BpiI	GAAGAC	1 cut(s)	1215
BpmI	CTGGAG	2 cut(s)	51, 820
BpuEI	CTTGAG	2 cut(s)	779, 1102
BsaAI	YACGTR	1 cut(s)	1198
BsaBI	GATNNNNATC	1 cut(s)	51
BsaJI	CCNNGG	5 cut(s)	211, 654, 687, 938, 939
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 123
Bse1I	ACTGG	3 cut(s)	34, 97, 903
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	557, 940
BseDI	CCNNGG	5 cut(s)	211, 654, 687, 938, 939
BseGI	GGATG	3 cut(s)	287, 1077, 1304
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	82, 123
BseMII	CTCAG	1 cut(s)	891
BseNI	ACTGG	3 cut(s)	34, 97, 903
BseSI	GKGCMC	1 cut(s)	1077
BseXI	GCAGC	3 cut(s)	509, 517, 577
Bsh1236I	CGCG	1 cut(s)	1029
BshFI	GGCC	2 cut(s)	945, 1188
BsiHKCI	CYCGRG	1 cut(s)	1048
BslFI	GGGAC	1 cut(s)	748
BslI	CCNNNNNNNGG	2 cut(s)	82, 123
BsmAI	GTCTC	1 cut(s)	855
BsmFI	GGGAC	1 cut(s)	748
BsnI	GGCC	2 cut(s)	945, 1188
BsoBI	CYCGRG	1 cut(s)	1048
Bsp1286I	GDGCHC	1 cut(s)	1077
Bsp1407I	TGTACA	2 cut(s)	172, 540
Bsp143I	GATC	4 cut(s)	46, 204, 247, 1109
Bsp19I	CCATGG	2 cut(s)	211, 654
BspACI	CCGC	1 cut(s)	1054
BspANI	GGCC	2 cut(s)	945, 1188
BspCNI	CTCAG	1 cut(s)	890
BspFNI	CGCG	1 cut(s)	1029
BspLI	GGNNCC	2 cut(s)	25, 944
BspPI	GGATC	1 cut(s)	1117
BsrGI	TGTACA	2 cut(s)	172, 540
BsrI	ACTGG	3 cut(s)	34, 97, 903
BssECI	CCNNGG	5 cut(s)	211, 654, 687, 938, 939
BssMI	GATC	4 cut(s)	46, 204, 247, 1109
BssT1I	CCWWGG	3 cut(s)	211, 654, 687
Bst2UI	CCWGG	2 cut(s)	557, 940
Bst4CI	ACNGT	3 cut(s)	245, 957, 1161
Bst6I	CTCTTC	1 cut(s)	142
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstAUI	TGTACA	2 cut(s)	172, 540
BstBAI	YACGTR	1 cut(s)	1198
BstC8I	GCNNGC	2 cut(s)	331, 947
BstDEI	CTNAG	1 cut(s)	877
BstDSI	CCRYGG	2 cut(s)	211, 654
BstF5I	GGATG	3 cut(s)	287, 1077, 1304
BstFNI	CGCG	1 cut(s)	1029
BstKTI	GATC	4 cut(s)	49, 207, 250, 1112
BstMAI	GTCTC	1 cut(s)	855
BstMBI	GATC	4 cut(s)	46, 204, 247, 1109
BstMWI	GCNNNNNNNGC	2 cut(s)	530, 878
BstNI	CCWGG	2 cut(s)	557, 940
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	555, 938
BstSLI	GKGCMC	1 cut(s)	1077
BstUI	CGCG	1 cut(s)	1029
BstV1I	GCAGC	3 cut(s)	509, 517, 577
BstV2I	GAAGAC	1 cut(s)	1215
BstXI	CCANNNNNNTGG	1 cut(s)	1010
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	945, 1188
BtgI	CCRYGG	2 cut(s)	211, 654
BtgZI	GCGATG	1 cut(s)	448
BtsCI	GGATG	3 cut(s)	287, 1077, 1304
BtsIMutI	CAGTG	3 cut(s)	27, 250, 896
Cac8I	GCNNGC	2 cut(s)	331, 947
Cfr13I	GGNCC	3 cut(s)	152, 943, 1137
CseI	GACGC	1 cut(s)	1035
Csp6I	GTAC	5 cut(s)	173, 541, 553, 909, 1252
CviAII	CATG	9 cut(s)	123, 212, 227, 493, 521, 569, 655, 1004, 1134
CviQI	GTAC	5 cut(s)	173, 541, 553, 909, 1252
DdeI	CTNAG	1 cut(s)	877
DpnI	GATC	4 cut(s)	48, 206, 249, 1111
DpnII	GATC	4 cut(s)	46, 204, 247, 1109
DraI	TTTAAA	1 cut(s)	846
Eam1104I	CTCTTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	142
Eco130I	CCWWGG	3 cut(s)	211, 654, 687
Eco47I	GGWCC	2 cut(s)	152, 1137
Eco88I	CYCGRG	1 cut(s)	1048
EcoO109I	RGGNCCY	2 cut(s)	152, 943
EcoRI	GAATTC	1 cut(s)	738
EcoRII	CCWGG	2 cut(s)	555, 938
EcoT14I	CCWWGG	3 cut(s)	211, 654, 687
EcoT22I	ATGCAT	1 cut(s)	526
ErhI	CCWWGG	3 cut(s)	211, 654, 687
FaeI	CATG	9 cut(s)	126, 215, 230, 496, 524, 572, 658, 1007, 1137
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FaqI	GGGAC	1 cut(s)	748
FatI	CATG	9 cut(s)	122, 211, 226, 492, 520, 568, 654, 1003, 1133
FauI	CCCGC	1 cut(s)	1047
FauNDI	CATATG	3 cut(s)	142, 319, 919
FbaI	TGATCA	2 cut(s)	46, 204
Fnu4HI	GCNGC	3 cut(s)	498, 531, 566
FokI	GGATG	3 cut(s)	294, 1064, 1291
Fsp4HI	GCNGC	3 cut(s)	498, 531, 566
FspBI	CTAG	4 cut(s)	465, 534, 735, 753
GluI	GCNGC	3 cut(s)	498, 531, 566
GsuI	CTGGAG	2 cut(s)	51, 820
HaeIII	GGCC	2 cut(s)	945, 1188
HgaI	GACGC	1 cut(s)	1035
Hin1II	CATG	9 cut(s)	126, 215, 230, 496, 524, 572, 658, 1007, 1137
HincII	GTYRAC	2 cut(s)	6, 1016
HindII	GTYRAC	2 cut(s)	6, 1016
HphI	GGTGA	2 cut(s)	199, 1069
Hpy166II	GTNNAC	3 cut(s)	6, 173, 1016
Hpy188III	TCNNGA	6 cut(s)	129, 735, 758, 765, 1119, 1154
Hpy8I	GTNNAC	3 cut(s)	6, 173, 1016
Hpy99I	CGWCG	1 cut(s)	1029
HpyAV	CCTTC	1 cut(s)	1150
HpyCH4III	ACNGT	3 cut(s)	245, 957, 1161
HpyCH4IV	ACGT	1 cut(s)	1197
HpyCH4V	TGCA	5 cut(s)	323, 361, 524, 949, 1069
HpyF10VI	GCNNNNNNNGC	2 cut(s)	530, 878
HpyF3I	CTNAG	1 cut(s)	877
HpySE526I	ACGT	1 cut(s)	1197
Hsp92II	CATG	9 cut(s)	126, 215, 230, 496, 524, 572, 658, 1007, 1137
Ksp22I	TGATCA	2 cut(s)	46, 204
Kzo9I	GATC	4 cut(s)	46, 204, 247, 1109
LmnI	GCTCC	2 cut(s)	23, 448
Lsp1109I	GCAGC	3 cut(s)	509, 517, 577
LweI	GCATC	2 cut(s)	316, 533
MaeI	CTAG	4 cut(s)	465, 534, 735, 753
MaeII	ACGT	1 cut(s)	1197
MaeIII	GTNAC	3 cut(s)	229, 404, 1319
MalI	GATC	4 cut(s)	48, 206, 249, 1111
MboI	GATC	4 cut(s)	46, 204, 247, 1109
MboII	GAAGA	5 cut(s)	80, 159, 413, 641, 1220
MfeI	CAATTG	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	1077
MlyI	GAGTC	4 cut(s)	770, 869, 1015, 1040
MmeI	TCCRAC	3 cut(s)	100, 394, 939
MnlI	CCTC	8 cut(s)	94, 143, 272, 487, 621, 999, 1036, 1115
Mph1103I	ATGCAT	1 cut(s)	526
MseI	TTAA	2 cut(s)	845, 1130
MslI	CAYNNNNRTG	3 cut(s)	243, 433, 1008
MspA1I	CMGCKG	1 cut(s)	530
MspR9I	CCNGG	2 cut(s)	557, 940
MunI	CAATTG	1 cut(s)	457
MvaI	CCWGG	2 cut(s)	557, 940
MvnI	CGCG	1 cut(s)	1029
MwoI	GCNNNNNNNGC	2 cut(s)	530, 878
NcoI	CCATGG	2 cut(s)	211, 654
NdeI	CATATG	3 cut(s)	142, 319, 919
NdeII	GATC	4 cut(s)	46, 204, 247, 1109
NlaIII	CATG	9 cut(s)	126, 215, 230, 496, 524, 572, 658, 1007, 1137
NlaIV	GGNNCC	2 cut(s)	25, 944
NsiI	ATGCAT	1 cut(s)	526
NspI	RCATGY	1 cut(s)	230
OliI	CACNNNNGTG	1 cut(s)	243
PasI	CCCWGGG	1 cut(s)	939
PciI	ACATGT	1 cut(s)	226
PfeI	GAWTC	6 cut(s)	216, 582, 682, 1031, 1148, 1175
PflMI	CCANNNNNTGG	2 cut(s)	82, 123
PkrI	GCNGC	3 cut(s)	499, 532, 567
PleI	GAGTC	4 cut(s)	769, 869, 1015, 1040
PpsI	GAGTC	4 cut(s)	769, 869, 1015, 1040
Ppu21I	YACGTR	1 cut(s)	1198
PpuMI	RGGWCCY	1 cut(s)	152
PscI	ACATGT	1 cut(s)	226
PsiI	TTATAA	1 cut(s)	810
Psp5II	RGGWCCY	1 cut(s)	152
Psp6I	CCWGG	2 cut(s)	555, 938
PspGI	CCWGG	2 cut(s)	555, 938
PspN4I	GGNNCC	2 cut(s)	25, 944
PspPI	GGNCC	3 cut(s)	152, 943, 1137
PspPPI	RGGWCCY	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	5 cut(s)	174, 542, 554, 910, 1253
RsaNI	GTAC	5 cut(s)	173, 541, 553, 909, 1252
RseI	CAYNNNNRTG	3 cut(s)	243, 433, 1008
SaqAI	TTAA	2 cut(s)	845, 1130
SatI	GCNGC	3 cut(s)	498, 531, 566
Sau3AI	GATC	4 cut(s)	46, 204, 247, 1109
Sau96I	GGNCC	3 cut(s)	152, 943, 1137
SchI	GAGTC	4 cut(s)	770, 869, 1015, 1040
ScrFI	CCNGG	2 cut(s)	557, 940
SduI	GDGCHC	1 cut(s)	1077
SfaNI	GCATC	2 cut(s)	316, 533
SinI	GGWCC	2 cut(s)	152, 1137
SmiMI	CAYNNNNRTG	3 cut(s)	243, 433, 1008
SmlI	CTYRAG	2 cut(s)	758, 1117
SmoI	CTYRAG	2 cut(s)	758, 1117
SpeI	ACTAGT	1 cut(s)	752
SsiI	CCGC	1 cut(s)	1054
SspI	AATATT	1 cut(s)	179
SspMI	CTAG	4 cut(s)	465, 534, 735, 753
StyD4I	CCNGG	2 cut(s)	555, 938
StyI	CCWWGG	3 cut(s)	211, 654, 687
TaaI	ACNGT	3 cut(s)	245, 957, 1161
TaiI	ACGT	1 cut(s)	1200
TaqI	TCGA	4 cut(s)	219, 292, 1024, 1178
TatI	WGTACW	3 cut(s)	172, 540, 908
TfiI	GAWTC	6 cut(s)	216, 582, 682, 1031, 1148, 1175
Tru1I	TTAA	2 cut(s)	845, 1130
Tru9I	TTAA	2 cut(s)	845, 1130
TscAI	CASTG	3 cut(s)	34, 250, 903
TseI	GCWGC	3 cut(s)	497, 530, 565
TspGWI	ACGGA	1 cut(s)	1033
TspRI	CASTG	3 cut(s)	34, 250, 903
Van91I	CCANNNNNTGG	2 cut(s)	82, 123
VpaK11BI	GGWCC	2 cut(s)	152, 1137
XapI	RAATTY	3 cut(s)	340, 738, 1061
XbaI	TCTAGA	1 cut(s)	734
XceI	RCATGY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	865
XspI	CTAG	4 cut(s)	465, 534, 735, 753
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.