MD11G1151200.v1.1

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
14365349 .. 14374177
8829 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1151200.v1.1.491

Sequence Viewer

Length: 1524 bp
ATGTTATTACTCATGTTGAGAGTTTCATTTTTTCTGTGTTTTCTTCTCATAAAGCTTTCTTTATGCGCTGATAAATATAGCAGAGATGACTTCCTTCCAGGCTTCGTGTTTGGTGCTTCCTCCTCTGCTTATCAGGTGGAAGGTGCTGCAGACCAAGACGGAAGGACCCCAAGCATCTTGGACACATATGCCCATGCCGGTCATTTTGATGGAGCTACGGGAGATGTAGCGTGTGATCAGTATCATAAATACAAGGAAGATGTCCAACTAATGGTGGATACTGGTTTGGAGGCATATAGATTTTCCATCTCATGGTCAAGACTTATCCCAAATGGAAGAGGACCCATTAATCCAAAGGGTGTACAATATTACAACAATCTAATTGATGAACTGATCAGCCATGGAATCGAACCACATGTTACTTTACACCACAGTGATCTCCCACAGGCACTTGAAGATGAGTATGGAGGATGGGTTAGTCGAAAAATTGTAAAAGACTTCACCGCATATGCAGATGTGTGCTTCAAAAATTTTGGGGATAGAGTTTTGCATTGGACTACTATGAATGAGCCTAATGTTTTTATACTCGGGGGTTACGATCTTGGATTTCTTCCACCACAACGATGTTCAGCTCCATTTGGTGTCAACTGTTCTACGGGTAACTCCTCAACAGAACCGTACATGGCAGCTCATAATATCTTGTTATCTCATGCATCAGCTGCTAGATTGTACAAGAAAGTATACAAGGACATGCAGCATGGATATATAGGAATCAACATTTATGGCTTTTGGTTTGTTCCTTTAACAAAAACTAGTGAAGATGAACTTGCTACCCAAAGAGCCATGGACTTCTATTTTGGTTGGTTTTTGAATCCCTTGGTGTTTGGAGATTACCCTGATGTAATGAAAAAGATCGCAGGCTCTAGACTTCCTGTTTTTACTAGTCTCGAGTCCCGAAGTGTCATGGGTTCATTTGACTTCATTGGAGTGAATCATTATTCCACATCCTACGTCAAGGACTACACCAGCATTTTAAAGATGGAAATCAGAGACTACACGGCAGACTCAGCAGTACTGATGTTGGCACTGCAAAATGATACGTCACCATTTGAGTTTCCAATAACTCCCTGGGGCCTTCAAGGACTGTTGGAATATGTCAAGCAAAATTATGGAAATCCTCCTTTATATATCCATGAAAATGGTCAATCGACTCGACGTAATTCCTCATTGGAGGACCGGCCGAGGGTGAAATATTTGGACGGATACATCCAATCTTTGCTTGCAGCTATAAGGAATGGATCGAACGCAAAAGGTTATTTTGTATGGTCCTTCTTGGATTCCATTGAGTTGTTAGGCGGCTATAAATCGAGCTACGGCCTATACTACGTAGATTTGGAAGACCCTGATTTAAAAAGACAACCTAAACTCTCTGCTCATTGGTACTCTCATTTTCTAAAGAGAAAAAAGGTCATCAGCTTTGATGAATTTCTTACATCCATTTCCAACGGTTACGACATTCAGTAG

Protein Analysis

508

Amino Acids

57.53

Weight (kDa)

5.84

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 29 - 489 2.1e-142 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 271, 312
AccI GTMKAC 1 cut(s) 741
AciI CCGC 2 cut(s) 504, 1356
AclWI GGATC 1 cut(s) 1306
AcoI YGGCCR 1 cut(s) 1238
AcsI RAATTY 2 cut(s) 529, 1484
AfaI GTAC 5 cut(s) 363, 680, 731, 1074, 1442
AfiI CCNNNNNNNGG 3 cut(s) 271, 312, 1243
AflIII ACRYGT 1 cut(s) 415
AgsI TTSAA 4 cut(s) 455, 526, 871, 1139
AhlI ACTAGT 2 cut(s) 812, 941
AjnI CCWGG 2 cut(s) 97, 1127
AleI CACNNNNGTG 1 cut(s) 432
AluBI AGCT 8 cut(s) 55, 215, 632, 689, 719, 1286, 1371, 1476
AluI AGCT 8 cut(s) 55, 215, 632, 689, 719, 1286, 1371, 1476
Alw26I GTCTC 2 cut(s) 950, 1044
AlwI GGATC 1 cut(s) 1306
Ama87I CYCGRG 2 cut(s) 587, 947
AoxI GGCC 3 cut(s) 1132, 1238, 1375
ApeKI GCWGC 5 cut(s) 146, 686, 719, 754, 1283
ApoI RAATTY 2 cut(s) 529, 1484
ArsI GACNNNNNNTTYG 2 cut(s) 839, 871
AseI ATTAAT 1 cut(s) 348
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 5 cut(s) 165, 341, 1132, 1234, 1326
AsuHPI GGTGA 3 cut(s) 493, 1095, 1258
AvaI CYCGRG 2 cut(s) 587, 947
AvaII GGWCC 4 cut(s) 165, 341, 1234, 1326
BbsI GAAGAC 1 cut(s) 1404
BbvI GCAGC 5 cut(s) 133, 698, 706, 766, 1295
BccI CCATC 4 cut(s) 203, 314, 465, 1033
BceAI ACGGC 2 cut(s) 1074, 1390
BciT130I CCWGG 2 cut(s) 99, 1129
BciVI GTATCC 2 cut(s) 271, 1256
BclI TGATCA 2 cut(s) 235, 393
BcoDI GTCTC 2 cut(s) 950, 1044
BcuI ACTAGT 2 cut(s) 812, 941
BfaI CTAG 4 cut(s) 723, 813, 924, 942
BfmI CTRYAG 1 cut(s) 147
BfuI GTATCC 2 cut(s) 271, 1256
BisI GCNGC 6 cut(s) 147, 687, 720, 755, 1284, 1357
BlsI GCNGC 6 cut(s) 148, 688, 721, 756, 1285, 1358
BmcAI AGTACT 1 cut(s) 1074
Bme1390I CCNGG 2 cut(s) 99, 1129
Bme18I GGWCC 4 cut(s) 165, 341, 1234, 1326
BmeT110I CYCGRG 2 cut(s) 587, 947
BmgT120I GGNCC 5 cut(s) 165, 341, 1132, 1234, 1326
BmiI GGNNCC 3 cut(s) 167, 343, 1133
BmrFI CCNGG 2 cut(s) 99, 1129
BmsI GCATC 2 cut(s) 183, 722
BpiI GAAGAC 1 cut(s) 1404
BsaAI YACGTR 1 cut(s) 1387
BsaBI GATNNNNATC 2 cut(s) 240, 1043
BsaJI CCNNGG 6 cut(s) 400, 843, 876, 1127, 1128, 1241
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 3 cut(s) 271, 312, 1243
Bse118I RCCGGY 2 cut(s) 197, 1236
Bse1I ACTGG 1 cut(s) 286
Bse8I GATNNNNATC 2 cut(s) 240, 1043
BseBI CCWGG 2 cut(s) 99, 1129
BseDI CCNNGG 6 cut(s) 400, 843, 876, 1127, 1128, 1241
BseGI GGATG 4 cut(s) 476, 1004, 1266, 1493
BseJI GATNNNNATC 2 cut(s) 240, 1043
BseLI CCNNNNNNNGG 3 cut(s) 271, 312, 1243
BseMII CTCAG 1 cut(s) 1080
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 2 cut(s) 112, 655
BseX3I CGGCCG 1 cut(s) 1238
BseXI GCAGC 5 cut(s) 133, 698, 706, 766, 1295
Bsh1285I CGRYCG 1 cut(s) 1241
BshFI GGCC 3 cut(s) 1134, 1240, 1377
BsiEI CGRYCG 1 cut(s) 1241
BsiHKCI CYCGRG 2 cut(s) 587, 947
BsiSI CCGG 2 cut(s) 198, 1237
BslFI GGGAC 1 cut(s) 937
BslI CCNNNNNNNGG 3 cut(s) 271, 312, 1243
BsmAI GTCTC 2 cut(s) 950, 1044
BsmFI GGGAC 1 cut(s) 937
BsnI GGCC 3 cut(s) 1134, 1240, 1377
BsoBI CYCGRG 2 cut(s) 587, 947
Bsp1407I TGTACA 2 cut(s) 361, 729
Bsp143I GATC 6 cut(s) 235, 393, 436, 598, 912, 1298
Bsp19I CCATGG 2 cut(s) 400, 843
BspACI CCGC 2 cut(s) 504, 1356
BspANI GGCC 3 cut(s) 1134, 1240, 1377
BspCNI CTCAG 1 cut(s) 1079
BspLI GGNNCC 3 cut(s) 167, 343, 1133
BspMAI CTGCAG 1 cut(s) 151
BspPI GGATC 1 cut(s) 1306
BsrFI RCCGGY 2 cut(s) 197, 1236
BsrGI TGTACA 2 cut(s) 361, 729
BsrI ACTGG 1 cut(s) 286
BssAI RCCGGY 2 cut(s) 197, 1236
BssECI CCNNGG 6 cut(s) 400, 843, 876, 1127, 1128, 1241
BssMI GATC 6 cut(s) 235, 393, 436, 598, 912, 1298
BssNAI GTATAC 1 cut(s) 742
BssT1I CCWWGG 3 cut(s) 400, 843, 876
Bst1107I GTATAC 1 cut(s) 742
Bst2UI CCWGG 2 cut(s) 99, 1129
Bst4CI ACNGT 5 cut(s) 434, 650, 678, 1146, 1508
Bst6I CTCTTC 1 cut(s) 331
BstAPI GCANNNNNTGC 1 cut(s) 719
BstAUI TGTACA 2 cut(s) 361, 729
BstBAI YACGTR 1 cut(s) 1387
BstC8I GCNNGC 2 cut(s) 919, 1281
BstDEI CTNAG 1 cut(s) 1066
BstDSI CCRYGG 2 cut(s) 400, 843
BstF5I GGATG 4 cut(s) 476, 1004, 1266, 1493
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 6 cut(s) 238, 396, 439, 601, 915, 1301
BstMAI GTCTC 2 cut(s) 950, 1044
BstMBI GATC 6 cut(s) 235, 393, 436, 598, 912, 1298
BstMCI CGRYCG 1 cut(s) 1241
BstMWI GCNNNNNNNGC 2 cut(s) 719, 1067
BstNI CCWGG 2 cut(s) 99, 1129
BstNSI RCATGY 2 cut(s) 419, 754
BstSCI CCNGG 2 cut(s) 97, 1127
BstSFI CTRYAG 1 cut(s) 147
BstSNI TACGTA 1 cut(s) 1387
BstV1I GCAGC 5 cut(s) 133, 698, 706, 766, 1295
BstV2I GAAGAC 1 cut(s) 1404
BstXI CCANNNNNNTGG 1 cut(s) 1199
BstZ17I GTATAC 1 cut(s) 742
BstZI CGGCCG 1 cut(s) 1238
BsuI GTATCC 2 cut(s) 271, 1256
BsuRI GGCC 3 cut(s) 1134, 1240, 1377
BtgI CCRYGG 2 cut(s) 400, 843
BtsCI GGATG 4 cut(s) 476, 1004, 1266, 1493
BtsI GCAGTG 1 cut(s) 1085
BtsIMutI CAGTG 2 cut(s) 439, 1085
Cac8I GCNNGC 2 cut(s) 919, 1281
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 2 cut(s) 197, 1236
Cfr13I GGNCC 5 cut(s) 165, 341, 1132, 1234, 1326
Csp6I GTAC 5 cut(s) 362, 679, 730, 1073, 1441
CviQI GTAC 5 cut(s) 362, 679, 730, 1073, 1441
DdeI CTNAG 1 cut(s) 1066
DpnI GATC 6 cut(s) 237, 395, 438, 600, 914, 1300
DpnII GATC 6 cut(s) 235, 393, 436, 598, 912, 1298
DraI TTTAAA 2 cut(s) 1035, 1410
EaeI YGGCCR 1 cut(s) 1238
EagI CGGCCG 1 cut(s) 1238
Eam1104I CTCTTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 331
EclXI CGGCCG 1 cut(s) 1238
Eco105I TACGTA 1 cut(s) 1387
Eco130I CCWWGG 3 cut(s) 400, 843, 876
Eco47I GGWCC 4 cut(s) 165, 341, 1234, 1326
Eco52I CGGCCG 1 cut(s) 1238
Eco88I CYCGRG 2 cut(s) 587, 947
EcoO109I RGGNCCY 3 cut(s) 165, 341, 1132
EcoRII CCWGG 2 cut(s) 97, 1127
EcoT14I CCWWGG 3 cut(s) 400, 843, 876
EcoT22I ATGCAT 1 cut(s) 715
ErhI CCWWGG 3 cut(s) 400, 843, 876
FalI AAGNNNNNCTT 2 cut(s) 810, 842
FaqI GGGAC 1 cut(s) 937
FauNDI CATATG 2 cut(s) 187, 508
FbaI TGATCA 2 cut(s) 235, 393
FblI GTMKAC 1 cut(s) 741
Fnu4HI GCNGC 6 cut(s) 147, 687, 720, 755, 1284, 1357
FokI GGATG 4 cut(s) 483, 991, 1253, 1480
Fsp4HI GCNGC 6 cut(s) 147, 687, 720, 755, 1284, 1357
FspBI CTAG 4 cut(s) 723, 813, 924, 942
GlaI GCGC 1 cut(s) 67
GluI GCNGC 6 cut(s) 147, 687, 720, 755, 1284, 1357
HaeIII GGCC 3 cut(s) 1134, 1240, 1377
HapII CCGG 2 cut(s) 198, 1237
HhaI GCGC 1 cut(s) 68
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 8 cut(s) 405, 771, 871, 950, 991, 1064, 1210, 1337
HpaII CCGG 2 cut(s) 198, 1237
HphI GGTGA 3 cut(s) 493, 1095, 1258
Hpy166II GTNNAC 3 cut(s) 362, 646, 742
Hpy188I TCNGA 1 cut(s) 1049
Hpy188III TCNNGA 4 cut(s) 318, 924, 947, 954
Hpy8I GTNNAC 3 cut(s) 362, 646, 742
Hpy99I CGWCG 1 cut(s) 1218
HpyAV CCTTC 5 cut(s) 104, 134, 156, 1145, 1339
HpyCH4III ACNGT 5 cut(s) 434, 650, 678, 1146, 1508
HpyCH4IV ACGT 4 cut(s) 1011, 1100, 1216, 1386
HpyCH4V TGCA 7 cut(s) 149, 512, 550, 713, 754, 1090, 1283
HpyF10VI GCNNNNNNNGC 2 cut(s) 719, 1067
HpyF3I CTNAG 1 cut(s) 1066
HpySE526I ACGT 4 cut(s) 1011, 1100, 1216, 1386
HspAI GCGC 1 cut(s) 66
Ksp22I TGATCA 2 cut(s) 235, 393
Kzo9I GATC 6 cut(s) 235, 393, 436, 598, 912, 1298
LmnI GCTCC 2 cut(s) 212, 637
Lsp1109I GCAGC 5 cut(s) 133, 698, 706, 766, 1295
LweI GCATC 2 cut(s) 183, 722
MaeI CTAG 4 cut(s) 723, 813, 924, 942
MaeII ACGT 4 cut(s) 1011, 1100, 1216, 1386
MaeIII GTNAC 5 cut(s) 418, 593, 659, 1101, 1508
MalI GATC 6 cut(s) 237, 395, 438, 600, 914, 1300
MboI GATC 6 cut(s) 235, 393, 436, 598, 912, 1298
MboII GAAGA 7 cut(s) 35, 269, 348, 467, 602, 830, 1409
MluCI AATT 6 cut(s) 381, 486, 529, 1165, 1219, 1484
MlyI GAGTC 3 cut(s) 959, 1058, 1204
MmeI TCCRAC 2 cut(s) 289, 1128
Mph1103I ATGCAT 1 cut(s) 715
MseI TTAA 4 cut(s) 348, 803, 1034, 1409
MslI CAYNNNNRTG 5 cut(s) 207, 432, 622, 986, 1197
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 2 cut(s) 198, 1237
MspR9I CCNGG 2 cut(s) 99, 1129
MvaI CCWGG 2 cut(s) 99, 1129
MwoI GCNNNNNNNGC 2 cut(s) 719, 1067
NcoI CCATGG 2 cut(s) 400, 843
NdeI CATATG 2 cut(s) 187, 508
NdeII GATC 6 cut(s) 235, 393, 436, 598, 912, 1298
NlaIV GGNNCC 3 cut(s) 167, 343, 1133
NmeAIII GCCGAG 1 cut(s) 1266
NmuCI GTSAC 1 cut(s) 1101
NsiI ATGCAT 1 cut(s) 715
NspI RCATGY 2 cut(s) 419, 754
OliI CACNNNNGTG 1 cut(s) 432
PaeR7I CTCGAG 1 cut(s) 947
PasI CCCWGGG 1 cut(s) 1128
PciI ACATGT 1 cut(s) 415
PcsI WCGNNNNNNNCGW 1 cut(s) 594
PfeI GAWTC 5 cut(s) 405, 771, 871, 991, 1337
PflMI CCANNNNNTGG 2 cut(s) 271, 312
PkrI GCNGC 6 cut(s) 148, 688, 721, 756, 1285, 1358
PleI GAGTC 3 cut(s) 958, 1058, 1204
PpsI GAGTC 3 cut(s) 958, 1058, 1204
Ppu21I YACGTR 1 cut(s) 1387
PpuMI RGGWCCY 2 cut(s) 165, 341
PscI ACATGT 1 cut(s) 415
PshBI ATTAAT 1 cut(s) 348
Psp5II RGGWCCY 2 cut(s) 165, 341
Psp6I CCWGG 2 cut(s) 97, 1127
PspGI CCWGG 2 cut(s) 97, 1127
PspN4I GGNNCC 3 cut(s) 167, 343, 1133
PspPI GGNCC 5 cut(s) 165, 341, 1132, 1234, 1326
PspPPI RGGWCCY 2 cut(s) 165, 341
PstI CTGCAG 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 5 cut(s) 363, 680, 731, 1074, 1442
RsaNI GTAC 5 cut(s) 362, 679, 730, 1073, 1441
RseI CAYNNNNRTG 5 cut(s) 207, 432, 622, 986, 1197
SaqAI TTAA 4 cut(s) 348, 803, 1034, 1409
SatI GCNGC 6 cut(s) 147, 687, 720, 755, 1284, 1357
Sau3AI GATC 6 cut(s) 235, 393, 436, 598, 912, 1298
Sau96I GGNCC 5 cut(s) 165, 341, 1132, 1234, 1326
ScaI AGTACT 1 cut(s) 1074
SchI GAGTC 3 cut(s) 959, 1058, 1204
ScrFI CCNGG 2 cut(s) 99, 1129
SfaNI GCATC 2 cut(s) 183, 722
SfcI CTRYAG 1 cut(s) 147
Sfr274I CTCGAG 1 cut(s) 947
SinI GGWCC 4 cut(s) 165, 341, 1234, 1326
SlaI CTCGAG 1 cut(s) 947
SmiMI CAYNNNNRTG 5 cut(s) 207, 432, 622, 986, 1197
SmlI CTYRAG 1 cut(s) 947
SmoI CTYRAG 1 cut(s) 947
SnaBI TACGTA 1 cut(s) 1387
SpeI ACTAGT 2 cut(s) 812, 941
Sse9I AATT 6 cut(s) 381, 486, 529, 1165, 1219, 1484
SsiI CCGC 2 cut(s) 504, 1356
SspI AATATT 2 cut(s) 368, 1253
SspMI CTAG 4 cut(s) 723, 813, 924, 942
StyD4I CCNGG 2 cut(s) 97, 1127
StyI CCWWGG 3 cut(s) 400, 843, 876
TaaI ACNGT 5 cut(s) 434, 650, 678, 1146, 1508
TaiI ACGT 4 cut(s) 1014, 1103, 1219, 1389
TaqI TCGA 7 cut(s) 408, 481, 948, 1208, 1213, 1301, 1367
TasI AATT 6 cut(s) 381, 486, 529, 1165, 1219, 1484
TatI WGTACW 3 cut(s) 361, 729, 1072
TauI GCSGC 1 cut(s) 1359
TfiI GAWTC 5 cut(s) 405, 771, 871, 991, 1337
Tru1I TTAA 4 cut(s) 348, 803, 1034, 1409
Tru9I TTAA 4 cut(s) 348, 803, 1034, 1409
TscAI CASTG 2 cut(s) 439, 1092
TseFI GTSAC 1 cut(s) 1101
TseI GCWGC 5 cut(s) 146, 686, 719, 754, 1283
Tsp45I GTSAC 1 cut(s) 1101
TspDTI ATGAA 9 cut(s) 15, 402, 578, 837, 920, 960, 970, 1209, 1497
TspGWI ACGGA 2 cut(s) 174, 1275
TspRI CASTG 2 cut(s) 439, 1092
Van91I CCANNNNNTGG 2 cut(s) 271, 312
VpaK11BI GGWCC 4 cut(s) 165, 341, 1234, 1326
VspI ATTAAT 1 cut(s) 348
XapI RAATTY 2 cut(s) 529, 1484
XbaI TCTAGA 1 cut(s) 923
XceI RCATGY 2 cut(s) 419, 754
XcmI CCANNNNNNNNNTGG 1 cut(s) 1125
XhoI CTCGAG 1 cut(s) 947
XmiI GTMKAC 1 cut(s) 741
XspI CTAG 4 cut(s) 723, 813, 924, 942
ZrmI AGTACT 1 cut(s) 1074
Zsp2I ATGCAT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.