Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000569

Physical Location & Seq

Genomic Coordinates Forward (+)

35766406 .. 35768441

Gene Structure 2036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034043

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCATGGAGCCACTGGAGATGTAGCATGTGATGAGTATCATAAATACAAGGAAGATGTGCAACTAATGGTGGATACTGGTTTAGAGGCGTATAGATTGTCCATCTCATGGTCAAGACTCATACCCAATGGCAGAGGACCTGTGAATCCAAAGGGTCTACAATATTACAACAATCTCATTGACCAACTCATTAGCAAAGGAATCCAGCCTCATGTTACTTTACACCACAGTGATCTCCCACAGGCACTCGACGATGAGTATGGAGGATGGGTTAGCCCACAGATTGTAAAAGACTTCACTGCATATGCAAATGCTTGCTTCGAACAGTTTGGCGATCGAGTTGGGCATTTGACTACTATGAATGAGCCAAATGTATTTGTACTCGGCGGTGATGATATTGGATTCCTTCCACCACAACGATGCTCAGCTCCATTTGGTTTTAATTGCTCGAGGGGTAACTCCTCAACTGAGACATACTTGGCAATTCATAATATCTTGTTATCTCATGCAACAGCTGCTGCACTCTACAAGCATACCTACCAGCACAAGCAGCGTGGGTTTATAGGCATCAATCTATTTTCCCATTGGTTTATTCCTCGAACCAAAACCCATCAAGACCAAGTTGCTGCTCAAAGAGCTGTAGACTTCTATTTTGGTTGGGTTATGCATTCTTTGGTGTTTGGAGAGTACACTCAAGTAATGAAAAAGAATGCAGGCTCTAGAATTCCAACGTTCACCCGTGCTGAGTCAGCACTGGTCAAGGGTTCCTTTGACTTCATCGGGCTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko00460 ko00500 ko00940 ko01100 ko01110 ko01120 map00230 map00460 map00500 map00940 map01100 map01110 map01120

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

264

Amino Acids

29.5

Weight (kDa)

6.66

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	3 - 263	7.4e-78	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G60090 AT1G60090 AT1G60270 AT1G60270 AT4G22100 AT5G16580
fragaria_vesca	FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420
malus_domestica	MD11G1150300.v1.1 MD11G1150400.v1.1 MD11G1150500.v1.1 MD11G1150800.v1.1 MD11G1151000.v1.1 MD11G1151200.v1.1
prunus_persica	Prupe.6G156200_v2.0.a1 Prupe.6G156200_v2.0.a1 Prupe.6G156400_v2.0.a1 Prupe.6G156500_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1
pyrus_communis	pycom11g12280 pycom11g12290 pycom11g12310
rosa_chinensis	RchiOBHm_Chr5g0041221 RchiOBHm_Chr5g0041231 RchiOBHm_Chr5g0041251 RchiOBHm_Chr7g0234981
rosa_laevigata	RLG00000001188 RLG00000034038 RLG00000034040 RLG00000034043
rosa_multiflora	Rmu_co8273911.1_g000001 Rmu_sc0003502.1_g000015 Rmu_sc0005650.1_g000002 Rmu_sc0007703.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039370 Rroxscaffold_1G00039400 Rroxscaffold_3G00226380
rosa_rugosa	Rorug05G0190700 Rorug05G0190800 Rorug07G0286800
rosa_samantha	Rh3BG326300 Rh5AG276800 Rh5AG277000 Rh5BG281700 Rh5BG281800 Rh5CG285800 Rh5CG313900 Rh5CG314000 Rh5DG289900 Rh5DG290100 Rh5DG290300 Rh7AG441700 Rh7DG431300
rosa_wichuraiana	Rw5G026030 Rw5G026040 Rw7G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	108
AccI	GTMKAC	2 cut(s)	157, 642
AciI	CCGC	1 cut(s)	387
AclI	AACGTT	1 cut(s)	731
AcsI	RAATTY	1 cut(s)	723
AfaI	GTAC	2 cut(s)	381, 689
AfiI	CCNNNNNNNGG	1 cut(s)	108
AleI	CACNNNNGTG	1 cut(s)	228
AluBI	AGCT	3 cut(s)	428, 515, 638
AluI	AGCT	3 cut(s)	428, 515, 638
Alw26I	GTCTC	1 cut(s)	464
AlwNI	CAGNNNCTG	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	448
ApeKI	GCWGC	4 cut(s)	515, 518, 550, 626
ApoI	RAATTY	1 cut(s)	723
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	401, 727
AsuII	TTCGAA	1 cut(s)	321
AvaI	CYCGRG	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	786
BbvI	GCAGC	4 cut(s)	502, 505, 562, 613
BccI	CCATC	3 cut(s)	110, 261, 618
BciVI	GTATCC	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	1 cut(s)	720
BfmI	CTRYAG	1 cut(s)	639
BfuI	GTATCC	1 cut(s)	67
BisI	GCNGC	4 cut(s)	516, 519, 551, 627
BlpI	GCTNAGC	1 cut(s)	424
BlsI	GCNGC	4 cut(s)	517, 520, 552, 628
Bme18I	GGWCC	1 cut(s)	137
BmeT110I	CYCGRG	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	10, 766
BmsI	GCATC	2 cut(s)	410, 576
BpmI	CTGGAG	1 cut(s)	36
Bpu1102I	GCTNAGC	1 cut(s)	424
Bpu14I	TTCGAA	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	678
BsaBI	GATNNNNATC	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	3 cut(s)	19, 82, 759
Bse8I	GATNNNNATC	1 cut(s)	36
BseGI	GGATG	1 cut(s)	272
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	3 cut(s)	438, 459, 735
BseNI	ACTGG	3 cut(s)	19, 82, 759
BseRI	GAGGAG	1 cut(s)	451
BseXI	GCAGC	4 cut(s)	502, 505, 562, 613
BsgI	GTGCAG	1 cut(s)	504
Bsh1285I	CGRYCG	1 cut(s)	337
BsiEI	CGRYCG	1 cut(s)	337
BsiHKCI	CYCGRG	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	464
BsmI	GAATGC	2 cut(s)	667, 715
BsoBI	CYCGRG	1 cut(s)	448
Bsp119I	TTCGAA	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp143I	GATC	2 cut(s)	232, 334
Bsp1720I	GCTNAGC	1 cut(s)	424
BspACI	CCGC	1 cut(s)	387
BspCNI	CTCAG	3 cut(s)	437, 460, 736
BspLI	GGNNCC	2 cut(s)	10, 766
BspT104I	TTCGAA	1 cut(s)	321
BsrI	ACTGG	3 cut(s)	19, 82, 759
BssMI	GATC	2 cut(s)	232, 334
Bst4CI	ACNGT	2 cut(s)	230, 327
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstBI	TTCGAA	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	316, 715
BstDEI	CTNAG	3 cut(s)	424, 468, 744
BstF5I	GGATG	1 cut(s)	272
BstKTI	GATC	2 cut(s)	235, 337
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	2 cut(s)	232, 334
BstMCI	CGRYCG	1 cut(s)	337
BstMWI	GCNNNNNNNGC	4 cut(s)	515, 550, 635, 749
BstNSI	RCATGY	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	639
BstV1I	GCAGC	4 cut(s)	502, 505, 562, 613
BsuI	GTATCC	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	272
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	4 cut(s)	12, 235, 297, 752
Cac8I	GCNNGC	2 cut(s)	316, 715
CaiI	CAGNNNCTG	1 cut(s)	518
Cfr13I	GGNCC	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	380, 688
CspCI	CAANNNNNGTGG	2 cut(s)	535, 570
CviAII	CATG	5 cut(s)	5, 27, 108, 212, 506
CviJI	RGCY	9 cut(s)	11, 208, 276, 367, 428, 515, 638, 717, 784
CviKI_1	RGCY	9 cut(s)	11, 208, 276, 367, 428, 515, 638, 717, 784
CviQI	GTAC	2 cut(s)	380, 688
DdeI	CTNAG	3 cut(s)	424, 468, 744
DpnI	GATC	2 cut(s)	234, 336
DpnII	GATC	2 cut(s)	232, 334
Eco24I	GRGCYC	1 cut(s)	786
Eco47I	GGWCC	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	723
EcoT22I	ATGCAT	2 cut(s)	6, 669
EcoT38I	GRGCYC	1 cut(s)	786
FaeI	CATG	5 cut(s)	8, 30, 111, 215, 509
FalI	AAGNNNNNCTT	2 cut(s)	752, 784
FatI	CATG	5 cut(s)	4, 26, 107, 211, 505
FauNDI	CATATG	1 cut(s)	304
FblI	GTMKAC	2 cut(s)	157, 642
Fnu4HI	GCNGC	4 cut(s)	516, 519, 551, 627
FokI	GGATG	1 cut(s)	279
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	4 cut(s)	516, 519, 551, 627
FspBI	CTAG	1 cut(s)	720
GluI	GCNGC	4 cut(s)	516, 519, 551, 627
GsuI	CTGGAG	1 cut(s)	36
Hin1II	CATG	5 cut(s)	8, 30, 111, 215, 509
HinfI	GANTC	5 cut(s)	117, 145, 201, 402, 746
HphI	GGTGA	2 cut(s)	401, 727
Hpy166II	GTNNAC	4 cut(s)	158, 643, 690, 735
Hpy188III	TCNNGA	3 cut(s)	114, 614, 720
Hpy8I	GTNNAC	4 cut(s)	158, 643, 690, 735
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	416
HpyCH4III	ACNGT	2 cut(s)	230, 327
HpyCH4IV	ACGT	1 cut(s)	731
HpyCH4V	TGCA	8 cut(s)	4, 61, 302, 308, 509, 521, 667, 713
HpyF10VI	GCNNNNNNNGC	4 cut(s)	515, 550, 635, 749
HpyF3I	CTNAG	3 cut(s)	424, 468, 744
HpySE526I	ACGT	1 cut(s)	731
Hsp92II	CATG	5 cut(s)	8, 30, 111, 215, 509
Kzo9I	GATC	2 cut(s)	232, 334
LmnI	GCTCC	2 cut(s)	8, 433
LpnPI	CCDG	7 cut(s)	63, 153, 218, 227, 554, 699, 740
Lsp1109I	GCAGC	4 cut(s)	502, 505, 562, 613
LweI	GCATC	2 cut(s)	410, 576
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	1 cut(s)	731
MaeIII	GTNAC	2 cut(s)	214, 455
MalI	GATC	2 cut(s)	234, 336
MboI	GATC	2 cut(s)	232, 334
MboII	GAAGA	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	786
MluCI	AATT	4 cut(s)	442, 483, 723, 787
MlyI	GAGTC	2 cut(s)	111, 755
MmeI	TCCRAC	1 cut(s)	752
MnlI	CCTC	7 cut(s)	79, 128, 219, 257, 444, 472, 606
Mph1103I	ATGCAT	2 cut(s)	6, 669
MseI	TTAA	2 cut(s)	441, 790
MslI	CAYNNNNRTG	2 cut(s)	228, 418
MspA1I	CMGCKG	1 cut(s)	515
Mva1269I	GAATGC	2 cut(s)	667, 715
MwoI	GCNNNNNNNGC	4 cut(s)	515, 550, 635, 749
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	2 cut(s)	232, 334
NlaIII	CATG	5 cut(s)	8, 30, 111, 215, 509
NlaIV	GGNNCC	2 cut(s)	10, 766
NmeAIII	GCCGAG	1 cut(s)	363
NsiI	ATGCAT	2 cut(s)	6, 669
NspI	RCATGY	1 cut(s)	30
NspV	TTCGAA	1 cut(s)	321
OliI	CACNNNNGTG	1 cut(s)	228
PaeR7I	CTCGAG	1 cut(s)	448
PctI	GAATGC	2 cut(s)	667, 715
PfeI	GAWTC	3 cut(s)	145, 201, 402
PflMI	CCANNNNNTGG	1 cut(s)	108
PkrI	GCNGC	4 cut(s)	517, 520, 552, 628
Ple19I	CGATCG	1 cut(s)	337
PleI	GAGTC	2 cut(s)	111, 754
PpsI	GAGTC	2 cut(s)	111, 754
PpuMI	RGGWCCY	1 cut(s)	137
Psp1406I	AACGTT	1 cut(s)	731
Psp5II	RGGWCCY	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	10, 766
PspPI	GGNCC	1 cut(s)	137
PspPPI	RGGWCCY	1 cut(s)	137
PspXI	VCTCGAGB	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	518
PvuI	CGATCG	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	2 cut(s)	381, 689
RsaNI	GTAC	2 cut(s)	380, 688
RseI	CAYNNNNRTG	2 cut(s)	228, 418
SaqAI	TTAA	2 cut(s)	441, 790
SatI	GCNGC	4 cut(s)	516, 519, 551, 627
Sau3AI	GATC	2 cut(s)	232, 334
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	2 cut(s)	111, 755
SduI	GDGCHC	1 cut(s)	786
SetI	ASST	6 cut(s)	142, 430, 517, 539, 640, 734
SfaNI	GCATC	2 cut(s)	410, 576
SfcI	CTRYAG	1 cut(s)	639
Sfr274I	CTCGAG	1 cut(s)	448
SfuI	TTCGAA	1 cut(s)	321
SinI	GGWCC	1 cut(s)	137
SlaI	CTCGAG	1 cut(s)	448
SmiMI	CAYNNNNRTG	2 cut(s)	228, 418
SmlI	CTYRAG	2 cut(s)	448, 693
SmoI	CTYRAG	2 cut(s)	448, 693
Sse9I	AATT	4 cut(s)	442, 483, 723, 787
SsiI	CCGC	1 cut(s)	387
SspI	AATATT	1 cut(s)	164
SspMI	CTAG	1 cut(s)	720
TaaI	ACNGT	2 cut(s)	230, 327
TaiI	ACGT	1 cut(s)	734
TaqI	TCGA	5 cut(s)	249, 321, 337, 449, 598
TasI	AATT	4 cut(s)	442, 483, 723, 787
TatI	WGTACW	2 cut(s)	379, 687
TfiI	GAWTC	3 cut(s)	145, 201, 402
Tru1I	TTAA	2 cut(s)	441, 790
Tru9I	TTAA	2 cut(s)	441, 790
TscAI	CASTG	4 cut(s)	19, 235, 304, 759
TseI	GCWGC	4 cut(s)	515, 518, 550, 626
TspDTI	ATGAA	4 cut(s)	374, 476, 716, 766
TspRI	CASTG	4 cut(s)	19, 235, 304, 759
Van91I	CCANNNNNTGG	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	1 cut(s)	723
XbaI	TCTAGA	1 cut(s)	719
XceI	RCATGY	1 cut(s)	30
XhoI	CTCGAG	1 cut(s)	448
XmiI	GTMKAC	2 cut(s)	157, 642
XspI	CTAG	1 cut(s)	720
Zsp2I	ATGCAT	2 cut(s)	6, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.