Rh5CG285800

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
31358579 .. 31360336
1758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG285800.1

Sequence Viewer

Length: 237 bp
ATGAGACTATGCATCGTCCTGTTTCTGATAACCAGACTCTTTACAAACTCTCAATCTCTTAGCAGGGCTGATTTCCCAGAAGGTTTTGTTTTCGGAACAGCTTCTTCGGCATACCAGGAGAAACAAGTAGGTCAGGTTGGAATTGCACTGGATGCAAAATGGCATGAACCTCTATCGGAAAGTGATGAGGACATAGATGCAGCACATAGAGCGAATGAATTCACATTGGGATGGTAA

Protein Analysis

78

Amino Acids

8.73

Weight (kDa)

4.71

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 218
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 218
Asp700I GAANNNNTTC 2 cut(s) 100, 218
BbvI GCAGC 1 cut(s) 212
BccI CCATC 1 cut(s) 225
BciT130I CCWGG 1 cut(s) 116
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 3 cut(s) 21, 142, 187
Bse1I ACTGG 1 cut(s) 153
BseBI CCWGG 1 cut(s) 116
BseGI GGATG 2 cut(s) 157, 236
BseNI ACTGG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 212
BsrI ACTGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 2 cut(s) 157, 236
BstMWI GCNNNNNNNGC 3 cut(s) 107, 152, 209
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 212
BtsCI GGATG 2 cut(s) 157, 236
BtsIMutI CAGTG 1 cut(s) 146
CviAII CATG 1 cut(s) 164
CviJI RGCY 2 cut(s) 68, 101
CviKI_1 RGCY 2 cut(s) 68, 101
DdeI CTNAG 1 cut(s) 59
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 14
FaeI CATG 1 cut(s) 167
FaiI YATR 5 cut(s) 10, 112, 165, 194, 207
FatI CATG 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
Hin1II CATG 1 cut(s) 167
HinfI GANTC 1 cut(s) 36
Hpy188I TCNGA 3 cut(s) 27, 95, 178
HpyAV CCTTC 1 cut(s) 74
HpyCH4V TGCA 4 cut(s) 12, 146, 155, 200
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 152, 209
HpyF3I CTNAG 1 cut(s) 59
Hsp92II CATG 1 cut(s) 167
LpnPI CCDG 8 cut(s) 32, 46, 49, 90, 101, 119, 128, 134
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 3 cut(s) 21, 142, 187
MboII GAAGA 1 cut(s) 96
MluCI AATT 2 cut(s) 141, 218
MlyI GAGTC 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 2 cut(s) 180, 181
Mph1103I ATGCAT 1 cut(s) 14
MroXI GAANNNNTTC 2 cut(s) 100, 218
MslI CAYNNNNRTG 1 cut(s) 229
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 3 cut(s) 107, 152, 209
NlaIII CATG 1 cut(s) 167
NsiI ATGCAT 1 cut(s) 14
PdmI GAANNNNTTC 2 cut(s) 100, 218
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
RseI CAYNNNNRTG 1 cut(s) 229
SatI GCNGC 1 cut(s) 201
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 116
SetI ASST 5 cut(s) 85, 103, 133, 138, 172
SfaNI GCATC 3 cut(s) 21, 142, 187
SmiMI CAYNNNNRTG 1 cut(s) 229
Sse9I AATT 2 cut(s) 141, 218
StyD4I CCNGG 1 cut(s) 114
TasI AATT 2 cut(s) 141, 218
TscAI CASTG 1 cut(s) 153
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 2 cut(s) 180, 231
TspRI CASTG 1 cut(s) 153
XapI RAATTY 1 cut(s) 218
XmnI GAANNNNTTC 2 cut(s) 100, 218
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.