Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000569

Physical Location & Seq

Genomic Coordinates Reverse (-)

14274670 .. 14278774

Gene Structure 4105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1150300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCAGGACAAGCAGCACGGATATATAGGAATCAATGTTTTTGCCTATTGGTTTGTTCCTCTAACAAAACTTATTGAAGATGAACTTGCTACCCAAAGAGCCATAGACTTCTATTTTGGTTGGGTTTTGAATCCCTTGGTGTTTGGAGATTACCCTGATGTAATGAAAAAGATAGTAGGCTCTAGAATTCCTGTTTTTACTAGTCTTGAGTCCCGAAGTGTCAGGGGTTCATTTGACTTCATTGGATTGAATTATTATCACCCATTAAACATCAAGGACTACTCCAGCACTCTAAAGATGGAAACCAGAGACTTTATGGCTGACTCAGCAATAAAGATATCGCCTCTCTGGGGCCTGCAAGAACTGTTGGAATATATCAAGGAAAATTATGGCAATCCTCCTATATATATCCATGAAAATGTATCTATCTGCATCATCCATGTGGTGATTTTTTTTGTCTGTAAATGGATAGTACAGGGTTTAAATTTGAACCCAATCAATGCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko00460 ko00500 ko00940 ko01100 ko01110 ko01120 map00230 map00460 map00500 map00940 map01100 map01110 map01120

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

170

Amino Acids

19.57

Weight (kDa)

5.76

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	4 - 140	4e-20	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G60090 AT1G60090 AT1G60270 AT1G60270 AT4G22100 AT5G16580
fragaria_vesca	FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420
malus_domestica	MD11G1150300.v1.1 MD11G1150400.v1.1 MD11G1150500.v1.1 MD11G1150800.v1.1 MD11G1151000.v1.1 MD11G1151200.v1.1
prunus_persica	Prupe.6G156200_v2.0.a1 Prupe.6G156200_v2.0.a1 Prupe.6G156400_v2.0.a1 Prupe.6G156500_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1
pyrus_communis	pycom11g12280 pycom11g12290 pycom11g12310
rosa_chinensis	RchiOBHm_Chr5g0041221 RchiOBHm_Chr5g0041231 RchiOBHm_Chr5g0041251 RchiOBHm_Chr7g0234981
rosa_laevigata	RLG00000001188 RLG00000034038 RLG00000034040 RLG00000034043
rosa_multiflora	Rmu_co8273911.1_g000001 Rmu_sc0003502.1_g000015 Rmu_sc0005650.1_g000002 Rmu_sc0007703.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039370 Rroxscaffold_1G00039400 Rroxscaffold_3G00226380
rosa_rugosa	Rorug05G0190700 Rorug05G0190800 Rorug07G0286800
rosa_samantha	Rh3BG326300 Rh5AG276800 Rh5AG277000 Rh5BG281700 Rh5BG281800 Rh5CG285800 Rh5CG313900 Rh5CG314000 Rh5DG289900 Rh5DG290100 Rh5DG290300 Rh7AG441700 Rh7DG431300
rosa_wichuraiana	Rw5G026030 Rw5G026040 Rw7G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	186, 484
AfaI	GTAC	1 cut(s)	474
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	4 cut(s)	77, 130, 250, 490
AhlI	ACTAGT	1 cut(s)	200
Alw26I	GTCTC	1 cut(s)	303
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	2 cut(s)	186, 484
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	2 cut(s)	251, 457
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	303
BcuI	ACTAGT	1 cut(s)	200
BfaI	CTAG	2 cut(s)	183, 201
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	353
BmsI	GCATC	1 cut(s)	441
BpmI	CTGGAG	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	25
BshFI	GGCC	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	354
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	435
BstMAI	GTCTC	1 cut(s)	303
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 326
BstV1I	GCAGC	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	435
Cac8I	GCNNGC	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	473
CviAII	CATG	2 cut(s)	413, 440
CviJI	RGCY	4 cut(s)	101, 180, 320, 354
CviKI_1	RGCY	4 cut(s)	101, 180, 320, 354
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	1 cut(s)	325
DraI	TTTAAA	1 cut(s)	483
Eco130I	CCWWGG	1 cut(s)	135
Eco32I	GATATC	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRI	GAATTC	1 cut(s)	186
EcoRV	GATATC	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	416, 443
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	2 cut(s)	412, 439
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	2 cut(s)	183, 201
GluI	GCNGC	1 cut(s)	14
GsuI	CTGGAG	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	354
Hin1II	CATG	2 cut(s)	416, 443
HinfI	GANTC	4 cut(s)	30, 130, 209, 323
HphI	GGTGA	2 cut(s)	251, 457
Hpy188III	TCNNGA	3 cut(s)	183, 206, 213
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4V	TGCA	3 cut(s)	4, 358, 432
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 326
HpyF3I	CTNAG	1 cut(s)	325
Hsp92II	CATG	2 cut(s)	416, 443
LpnPI	CCDG	8 cut(s)	168, 204, 208, 298, 319, 334, 368, 461
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	441
MaeI	CTAG	2 cut(s)	183, 201
MboII	GAAGA	1 cut(s)	89
MluCI	AATT	4 cut(s)	186, 250, 385, 484
MlyI	GAGTC	2 cut(s)	218, 317
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	3 cut(s)	69, 354, 408
MseI	TTAA	2 cut(s)	266, 482
MslI	CAYNNNNRTG	2 cut(s)	417, 440
MwoI	GCNNNNNNNGC	2 cut(s)	10, 326
NlaIII	CATG	2 cut(s)	416, 443
NlaIV	GGNNCC	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	30, 130
PkrI	GCNGC	1 cut(s)	15
PleI	GAGTC	2 cut(s)	217, 317
PpsI	GAGTC	2 cut(s)	217, 317
PspN4I	GGNNCC	1 cut(s)	353
PspPI	GGNCC	1 cut(s)	352
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
RseI	CAYNNNNRTG	2 cut(s)	417, 440
SaqAI	TTAA	2 cut(s)	266, 482
SatI	GCNGC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	2 cut(s)	218, 317
SfaNI	GCATC	1 cut(s)	441
SmiMI	CAYNNNNRTG	2 cut(s)	417, 440
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SpeI	ACTAGT	1 cut(s)	200
Sse9I	AATT	4 cut(s)	186, 250, 385, 484
SspMI	CTAG	2 cut(s)	183, 201
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	366
TasI	AATT	4 cut(s)	186, 250, 385, 484
TatI	WGTACW	1 cut(s)	472
TfiI	GAWTC	2 cut(s)	30, 130
Tru1I	TTAA	2 cut(s)	266, 482
Tru9I	TTAA	2 cut(s)	266, 482
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	5 cut(s)	96, 179, 219, 229, 429
TspGWI	ACGGA	1 cut(s)	33
XapI	RAATTY	2 cut(s)	186, 484
XbaI	TCTAGA	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XspI	CTAG	2 cut(s)	183, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.