Rh5CG314000

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
34671845 .. 34678067
6223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG314000.1

Sequence Viewer

Length: 1563 bp
ATGTTGAGAATGGTTCTGCAACTGGAACTGCTCCTCTTTCTTTGCTTCATAATTCTTATCAGTACCCCCCTAAATCTTTCATTAGCTTTTGATTTAGAACTAGGCGCTGATGAGTTTAAAAGAGATGACTTCCCTTCCCCACCGGACTTTGTTTTTGGTGCTTCCTCCTCTGCATATCAGGTGGAAGGTGCTGTGGACCAAGACGGGAGAACCCCAAGCATCTTGGACACCTATGCGCATGCTGGGAAAATGCATGGAGCCACCGGAGATGTAGCGTGTGATGAGTATCATAAATACAAGGAAGATGTGCAACTAATGGTGGATACTGGTTTAGAGGCGTATAGATTTTCCATCTCATGGTCAAGACTTATACCCAATGGAAGAGGACCTGTGAATCCAAAGGGTCTACAATATTACAACAATCTAATTGACCAACTAATCAGCAAAGGAATCCAGCCTCATGTTACTTTACACCACAGTGATCTCCCACAGGCACTCGACGATGAGTATGGAGGATGGGTTAGCCCACAGATTGTAAAAGACTTCACTGCATATGCAAATGTTTGCTTCGAACAGTTTGGCGATCGCGTTAGGCATTGGACTACTATGAATGAGCCAAATGTATTTGTACTCGGGGGTTATGATATTGGATTCCTTCCACCGTCACGATGTTCAGCTCCATTTGGTGTTAATTGCTCCAAGGGTAACTCCTCAACTGAGCCCTACATGGCAATTCATAATTTCTTGCTATCTCATGCATCAGCTGCTGCACTCTACAAGCAAACCTACCAGCACGAGCAGCGTGGGTTTATAGGCATCAATGTATTTGCCTATTGGTTTATTCCTCGAACCGAAACCCATCAAGACAAAGTTGCTGCTCAAAGAGCTATGGACTTCTACTTTGGTTGGATTATGAATCCTTTGGTGTTCGGAGAGTACCCTCAAGTAATGAAAGAGAATGCAGGCTCTAGACTTCCGACGTTCACCAGTGCTGAGTCTTCAAAGGTCAAAGGCTCGTTGGACTTCATCGGACTCAATTACTATAACACATTGTATGCCAAGGACAACTCTGCCGCCCTAAACATTCCAAAAAGAGACTATATGGCTGATTCGGCAATCCAGATTTCTCCTTTGGATCACAATACATCAACGTTTGAGTATCCGATAACACCTTGGGGTATGGAAGAACTGTTGGAATATATCAAACAAAACTACGGCAATCCTCCCTTATATATCCATGAAAATGGTCAACGAACTCGACGCAATTCATCGTTGGAGGATTGGTCCAGAATCGAATATTTGCATGGACACATTCACAGTTTGCTTAATGTTTTAAGGAATGGATCAAATGCCAGAGGCTATTTTACCTGGTCTCTCTTGGATTCACTTGAGCTTTTGGATGGCTATGAATCAAGCTACGGCCTTTACTACATCGATTTGGACGATCCTGATTTAAAAAGACAGCCTAAACTCTCTGCGCATTGGTACTCAAAGTTTCTGAAGAACAAAAACTTCACTCCACGTTCAGTTTCAGATGCTGATCAACATTACTTCTTTGAGTAG

Protein Analysis

520

Amino Acids

59.27

Weight (kDa)

5.43

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 47 - 504 1.3e-140 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 237, 1479
AccB7I CCANNNNNTGG 1 cut(s) 357
AccI GTMKAC 1 cut(s) 406
AccII CGCG 1 cut(s) 588
AciI CCGC 1 cut(s) 1074
AclI AACGTT 1 cut(s) 1151
AclWI GGATC 3 cut(s) 1143, 1351, 1439
AcuI CTGAAG 1 cut(s) 1520
AfaI GTAC 4 cut(s) 64, 630, 938, 1487
AfiI CCNNNNNNNGG 1 cut(s) 357
AgsI TTSAA 1 cut(s) 1002
AjnI CCWGG 1 cut(s) 1367
AleI CACNNNNGTG 1 cut(s) 477
AluBI AGCT 6 cut(s) 86, 677, 764, 887, 1393, 1416
AluI AGCT 6 cut(s) 86, 677, 764, 887, 1393, 1416
Alw26I GTCTC 2 cut(s) 1089, 1377
AlwI GGATC 3 cut(s) 1143, 1351, 1439
AlwNI CAGNNNCTG 2 cut(s) 767, 1538
Ama87I CYCGRG 1 cut(s) 632
AoxI GGCC 1 cut(s) 1420
ApeKI GCWGC 4 cut(s) 764, 767, 799, 875
ArsI GACNNNNNNTTYG 4 cut(s) 137, 169, 884, 916
AsiSI GCGATCGC 1 cut(s) 586
AspLEI GCGC 3 cut(s) 107, 238, 1480
AspS9I GGNCC 3 cut(s) 196, 386, 1284
AsuHPI GGTGA 1 cut(s) 976
AsuII TTCGAA 1 cut(s) 570
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 3 cut(s) 196, 386, 1284
BanII GRGCYC 1 cut(s) 723
BauI CACGAG 1 cut(s) 794
BbsI GAAGAC 1 cut(s) 990
BbvI GCAGC 4 cut(s) 751, 754, 811, 862
BccI CCATC 4 cut(s) 359, 510, 867, 1394
BceAI ACGGC 2 cut(s) 1231, 1435
BciT130I CCWGG 1 cut(s) 1369
BciVI GTATCC 2 cut(s) 316, 1170
BclI TGATCA 1 cut(s) 1540
BcoDI GTCTC 2 cut(s) 1089, 1377
BfaI CTAG 2 cut(s) 101, 969
BfoI RGCGCY 1 cut(s) 108
BfuI GTATCC 2 cut(s) 316, 1170
BisI GCNGC 5 cut(s) 765, 768, 800, 876, 1074
BlsI GCNGC 5 cut(s) 766, 769, 801, 877, 1075
Bme1390I CCNGG 1 cut(s) 1369
Bme18I GGWCC 3 cut(s) 196, 386, 1284
BmeT110I CYCGRG 1 cut(s) 632
BmgT120I GGNCC 3 cut(s) 196, 386, 1284
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 1369
BmsI GCATC 4 cut(s) 228, 767, 825, 1525
BpiI GAAGAC 1 cut(s) 990
Bpu14I TTCGAA 1 cut(s) 570
BpuEI CTTGAG 2 cut(s) 927, 1409
Bsa29I ATCGAT 1 cut(s) 1434
BsaBI GATNNNNATC 2 cut(s) 285, 1539
BsaI GGTCTC 1 cut(s) 1377
BsaJI CCNNGG 3 cut(s) 699, 1059, 1172
BsaWI WCCGGW 2 cut(s) 142, 263
BsaXI ACNNNNNCTCC 4 cut(s) 504, 534, 1268, 1298
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse1I ACTGG 3 cut(s) 27, 331, 987
Bse8I GATNNNNATC 2 cut(s) 285, 1539
BseBI CCWGG 1 cut(s) 1369
BseCI ATCGAT 1 cut(s) 1434
BseDI CCNNGG 3 cut(s) 699, 1059, 1172
BseGI GGATG 2 cut(s) 521, 1405
BseJI GATNNNNATC 2 cut(s) 285, 1539
BseLI CCNNNNNNNGG 1 cut(s) 357
BseMII CTCAG 2 cut(s) 708, 984
BseNI ACTGG 3 cut(s) 27, 331, 987
BseRI GAGGAG 3 cut(s) 23, 157, 700
BseXI GCAGC 4 cut(s) 751, 754, 811, 862
BseYI CCCAGC 1 cut(s) 242
BsgI GTGCAG 1 cut(s) 753
Bsh1236I CGCG 1 cut(s) 588
Bsh1285I CGRYCG 1 cut(s) 586
BshFI GGCC 1 cut(s) 1422
BshVI ATCGAT 1 cut(s) 1434
BsiEI CGRYCG 1 cut(s) 586
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 2 cut(s) 143, 264
BslI CCNNNNNNNGG 1 cut(s) 357
BsmAI GTCTC 2 cut(s) 1089, 1377
BsmI GAATGC 1 cut(s) 964
BsnI GGCC 1 cut(s) 1422
Bso31I GGTCTC 1 cut(s) 1377
BsoBI CYCGRG 1 cut(s) 632
Bsp119I TTCGAA 1 cut(s) 570
Bsp1286I GDGCHC 1 cut(s) 723
Bsp143I GATC 6 cut(s) 481, 583, 1135, 1343, 1444, 1540
BspACI CCGC 1 cut(s) 1074
BspANI GGCC 1 cut(s) 1422
BspCNI CTCAG 2 cut(s) 709, 985
BspDI ATCGAT 1 cut(s) 1434
BspFNI CGCG 1 cut(s) 588
BspLI GGNNCC 1 cut(s) 259
BspPI GGATC 3 cut(s) 1143, 1351, 1439
BspT104I TTCGAA 1 cut(s) 570
BspTNI GGTCTC 1 cut(s) 1377
BsrI ACTGG 3 cut(s) 27, 331, 987
BssECI CCNNGG 3 cut(s) 699, 1059, 1172
BssMI GATC 6 cut(s) 481, 583, 1135, 1343, 1444, 1540
BssSI CACGAG 1 cut(s) 794
BssT1I CCWWGG 3 cut(s) 699, 1059, 1172
Bst2BI CACGAG 1 cut(s) 794
Bst2UI CCWGG 1 cut(s) 1369
Bst4CI ACNGT 5 cut(s) 479, 576, 663, 1191, 1319
Bst6I CTCTTC 1 cut(s) 376
BstAPI GCANNNNNTGC 1 cut(s) 764
BstBI TTCGAA 1 cut(s) 570
BstC8I GCNNGC 2 cut(s) 240, 964
BstDEI CTNAG 2 cut(s) 717, 993
BstF5I GGATG 2 cut(s) 521, 1405
BstFNI CGCG 1 cut(s) 588
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 3 cut(s) 107, 238, 1480
BstKTI GATC 6 cut(s) 484, 586, 1138, 1346, 1447, 1543
BstMAI GTCTC 2 cut(s) 1089, 1377
BstMBI GATC 6 cut(s) 481, 583, 1135, 1343, 1444, 1540
BstMCI CGRYCG 1 cut(s) 586
BstMWI GCNNNNNNNGC 4 cut(s) 764, 799, 884, 1112
BstNI CCWGG 1 cut(s) 1369
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 1367
BstUI CGCG 1 cut(s) 588
BstV1I GCAGC 4 cut(s) 751, 754, 811, 862
BstV2I GAAGAC 1 cut(s) 990
BstXI CCANNNNNNTGG 1 cut(s) 1244
Bsu15I ATCGAT 1 cut(s) 1434
BsuI GTATCC 2 cut(s) 316, 1170
BsuRI GGCC 1 cut(s) 1422
BsuTUI ATCGAT 1 cut(s) 1434
BtsCI GGATG 2 cut(s) 521, 1405
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 3 cut(s) 484, 546, 994
Cac8I GCNNGC 2 cut(s) 240, 964
CaiI CAGNNNCTG 2 cut(s) 767, 1538
CfoI GCGC 3 cut(s) 107, 238, 1480
Cfr13I GGNCC 3 cut(s) 196, 386, 1284
ClaI ATCGAT 1 cut(s) 1434
CseI GACGC 1 cut(s) 1269
CsiI ACCWGGT 1 cut(s) 1367
Csp6I GTAC 4 cut(s) 63, 629, 937, 1486
CviAII CATG 8 cut(s) 239, 254, 357, 461, 727, 755, 1238, 1304
CviQI GTAC 4 cut(s) 63, 629, 937, 1486
DdeI CTNAG 2 cut(s) 717, 993
DpnI GATC 6 cut(s) 483, 585, 1137, 1345, 1446, 1542
DpnII GATC 6 cut(s) 481, 583, 1135, 1343, 1444, 1540
DraI TTTAAA 2 cut(s) 118, 1455
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
Eco130I CCWWGG 3 cut(s) 699, 1059, 1172
Eco24I GRGCYC 1 cut(s) 723
Eco31I GGTCTC 1 cut(s) 1377
Eco47I GGWCC 3 cut(s) 196, 386, 1284
Eco57I CTGAAG 1 cut(s) 1520
Eco88I CYCGRG 1 cut(s) 632
EcoO109I RGGNCCY 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 1367
EcoT14I CCWWGG 3 cut(s) 699, 1059, 1172
EcoT22I ATGCAT 2 cut(s) 255, 760
EcoT38I GRGCYC 1 cut(s) 723
ErhI CCWWGG 3 cut(s) 699, 1059, 1172
FaeI CATG 8 cut(s) 242, 257, 360, 464, 730, 758, 1241, 1307
FatI CATG 8 cut(s) 238, 253, 356, 460, 726, 754, 1237, 1303
FauNDI CATATG 1 cut(s) 553
FbaI TGATCA 1 cut(s) 1540
FblI GTMKAC 1 cut(s) 406
Fnu4HI GCNGC 5 cut(s) 765, 768, 800, 876, 1074
FokI GGATG 2 cut(s) 528, 1412
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 5 cut(s) 765, 768, 800, 876, 1074
FspAI RTGCGCAY 1 cut(s) 237
FspBI CTAG 2 cut(s) 101, 969
FspI TGCGCA 2 cut(s) 237, 1479
GlaI GCGC 3 cut(s) 106, 237, 1479
GluI GCNGC 5 cut(s) 765, 768, 800, 876, 1074
GsaI CCCAGC 1 cut(s) 246
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 1 cut(s) 1422
HapII CCGG 2 cut(s) 143, 264
HgaI GACGC 1 cut(s) 1269
HhaI GCGC 3 cut(s) 107, 238, 1480
Hin1II CATG 8 cut(s) 242, 257, 360, 464, 730, 758, 1241, 1307
Hin6I GCGC 3 cut(s) 105, 236, 1478
HinP1I GCGC 3 cut(s) 105, 236, 1478
HincII GTYRAC 1 cut(s) 1250
HindII GTYRAC 1 cut(s) 1250
HpaII CCGG 2 cut(s) 143, 264
HphI GGTGA 1 cut(s) 976
Hpy166II GTNNAC 4 cut(s) 196, 407, 984, 1250
Hpy188I TCNGA 6 cut(s) 932, 978, 1031, 1164, 1500, 1534
Hpy188III TCNNGA 7 cut(s) 363, 666, 863, 969, 1120, 1287, 1448
Hpy8I GTNNAC 4 cut(s) 196, 407, 984, 1250
Hpy99I CGWCG 3 cut(s) 503, 982, 1263
HpyAV CCTTC 3 cut(s) 144, 179, 665
HpyCH4III ACNGT 5 cut(s) 479, 576, 663, 1191, 1319
HpyCH4IV ACGT 3 cut(s) 980, 1151, 1522
HpyF10VI GCNNNNNNNGC 4 cut(s) 764, 799, 884, 1112
HpyF3I CTNAG 2 cut(s) 717, 993
HpySE526I ACGT 3 cut(s) 980, 1151, 1522
Hsp92II CATG 8 cut(s) 242, 257, 360, 464, 730, 758, 1241, 1307
HspAI GCGC 3 cut(s) 105, 236, 1478
Ksp22I TGATCA 1 cut(s) 1540
Kzo9I GATC 6 cut(s) 481, 583, 1135, 1343, 1444, 1540
LmnI GCTCC 4 cut(s) 36, 257, 682, 701
Lsp1109I GCAGC 4 cut(s) 751, 754, 811, 862
LweI GCATC 4 cut(s) 228, 767, 825, 1525
MabI ACCWGGT 1 cut(s) 1367
MaeI CTAG 2 cut(s) 101, 969
MaeII ACGT 3 cut(s) 980, 1151, 1522
MaeIII GTNAC 3 cut(s) 463, 663, 704
MalI GATC 6 cut(s) 483, 585, 1137, 1345, 1446, 1542
MboI GATC 6 cut(s) 481, 583, 1135, 1343, 1444, 1540
MboII GAAGA 5 cut(s) 314, 393, 990, 1196, 1513
MhlI GDGCHC 1 cut(s) 723
MluCI AATT 7 cut(s) 51, 426, 691, 732, 739, 1036, 1264
MlyI GAGTC 2 cut(s) 1004, 1026
MmeI TCCRAC 5 cut(s) 887, 999, 1001, 1173, 1254
Mph1103I ATGCAT 2 cut(s) 255, 760
MseI TTAA 5 cut(s) 117, 690, 1326, 1334, 1454
MslI CAYNNNNRTG 2 cut(s) 477, 1242
MspA1I CMGCKG 1 cut(s) 764
MspI CCGG 2 cut(s) 143, 264
MspR9I CCNGG 1 cut(s) 1369
Mva1269I GAATGC 1 cut(s) 964
MvaI CCWGG 1 cut(s) 1369
MvnI CGCG 1 cut(s) 588
MwoI GCNNNNNNNGC 4 cut(s) 764, 799, 884, 1112
NdeI CATATG 1 cut(s) 553
NdeII GATC 6 cut(s) 481, 583, 1135, 1343, 1444, 1540
NlaIII CATG 8 cut(s) 242, 257, 360, 464, 730, 758, 1241, 1307
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 663
NsbI TGCGCA 2 cut(s) 237, 1479
NsiI ATGCAT 2 cut(s) 255, 760
NspI RCATGY 1 cut(s) 242
NspV TTCGAA 1 cut(s) 570
OliI CACNNNNGTG 1 cut(s) 477
PaeI GCATGC 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 1440
PctI GAATGC 1 cut(s) 964
PfeI GAWTC 8 cut(s) 394, 450, 651, 916, 1109, 1290, 1382, 1409
PflMI CCANNNNNTGG 1 cut(s) 357
PkrI GCNGC 5 cut(s) 766, 769, 801, 877, 1075
Ple19I CGATCG 1 cut(s) 586
PleI GAGTC 2 cut(s) 1003, 1026
PpsI GAGTC 2 cut(s) 1003, 1026
PpuMI RGGWCCY 1 cut(s) 386
Psp1406I AACGTT 1 cut(s) 1151
Psp5II RGGWCCY 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 1367
PspFI CCCAGC 1 cut(s) 242
PspGI CCWGG 1 cut(s) 1367
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 3 cut(s) 196, 386, 1284
PspPPI RGGWCCY 1 cut(s) 386
PstNI CAGNNNCTG 2 cut(s) 767, 1538
PvuI CGATCG 1 cut(s) 586
PvuII CAGCTG 1 cut(s) 764
RgaI GCGATCGC 1 cut(s) 586
RsaI GTAC 4 cut(s) 64, 630, 938, 1487
RsaNI GTAC 4 cut(s) 63, 629, 937, 1486
RseI CAYNNNNRTG 2 cut(s) 477, 1242
SaqAI TTAA 5 cut(s) 117, 690, 1326, 1334, 1454
SatI GCNGC 5 cut(s) 765, 768, 800, 876, 1074
Sau3AI GATC 6 cut(s) 481, 583, 1135, 1343, 1444, 1540
Sau96I GGNCC 3 cut(s) 196, 386, 1284
SchI GAGTC 2 cut(s) 1004, 1026
ScrFI CCNGG 1 cut(s) 1369
SduI GDGCHC 1 cut(s) 723
SexAI ACCWGGT 1 cut(s) 1367
SfaAI GCGATCGC 1 cut(s) 586
SfaNI GCATC 4 cut(s) 228, 767, 825, 1525
SfuI TTCGAA 1 cut(s) 570
SgfI GCGATCGC 1 cut(s) 586
SinI GGWCC 3 cut(s) 196, 386, 1284
SmiMI CAYNNNNRTG 2 cut(s) 477, 1242
SmlI CTYRAG 2 cut(s) 942, 1388
SmoI CTYRAG 2 cut(s) 942, 1388
SphI GCATGC 1 cut(s) 242
Sse9I AATT 7 cut(s) 51, 426, 691, 732, 739, 1036, 1264
SsiI CCGC 1 cut(s) 1074
SspI AATATT 2 cut(s) 413, 1298
SspMI CTAG 2 cut(s) 101, 969
StyD4I CCNGG 1 cut(s) 1367
StyI CCWWGG 3 cut(s) 699, 1059, 1172
TaaI ACNGT 5 cut(s) 479, 576, 663, 1191, 1319
TaiI ACGT 3 cut(s) 983, 1154, 1525
TaqI TCGA 6 cut(s) 498, 570, 847, 1258, 1293, 1434
TasI AATT 7 cut(s) 51, 426, 691, 732, 739, 1036, 1264
TatI WGTACW 1 cut(s) 628
TauI GCSGC 1 cut(s) 1076
TfiI GAWTC 8 cut(s) 394, 450, 651, 916, 1109, 1290, 1382, 1409
Tru1I TTAA 5 cut(s) 117, 690, 1326, 1334, 1454
Tru9I TTAA 5 cut(s) 117, 690, 1326, 1334, 1454
TscAI CASTG 3 cut(s) 484, 553, 994
TseFI GTSAC 1 cut(s) 663
TseI GCWGC 4 cut(s) 764, 767, 799, 875
Tsp45I GTSAC 1 cut(s) 663
TspRI CASTG 3 cut(s) 484, 553, 994
Van91I CCANNNNNTGG 1 cut(s) 357
VpaK11BI GGWCC 3 cut(s) 196, 386, 1284
XbaI TCTAGA 1 cut(s) 968
XceI RCATGY 1 cut(s) 242
XmiI GTMKAC 1 cut(s) 406
XspI CTAG 2 cut(s) 101, 969
Zsp2I ATGCAT 2 cut(s) 255, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.