Rw5G026030

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
37341114 .. 37346538
5425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G026030.1

Sequence Viewer

Length: 1533 bp
ATGTTGAGAATGATTCTGCAACTGCAATTGCTCCTCTTTCTTCGCTTCATAATTCTTCTCGGTATCCCCCTAAATCTTTATTTAGCTTTTGATTTAGAACTAGGCAATGATGAGTTTAAAAGAGATGACTTCCCTCCCCCACCGGACTTTGTTTTTGGTGCATCCTCCTCTGCTTACCAGGTGGAAGGTGCTGCGGACCAAGACGGGAGAACCCCAAGCATCTTGGACACCTATACTCATGCTGGAAAAATGCATGGAGCCACCGGAGATATAGCGTGTGATGAGTATCATAAATACAAGGAAGATGTGCAACTGATGGTGGATACTGGTTTAGAGGCGTATAGATTTTCCATCTCATGGTCAAGACTCATACCCAATGGAAGAGGACCCGTGAATCCAAAGGGTGTACAATATTACAACAATCTCATTGACCAACTAATCAGCAAAGGAATCCAGCCTCATGTTACTTTACACCACAGTGATCTCCCACAGGCACTCGACGATGAGTATGGAGGATGGGTTAGCCCACAGATTGTAAAAGACTTCACTGCATATGCAAATGTTTGCTTCGAACAGTTTGGCGATCGAGTTGGGCATTGGACTACTATGAATGAGCCAAATGTATTTGTACTCGGGGGTTATGATATTGGATTCCTTCCACCACAACGATGTTCAGCTCCATTTGGTCTTAATTGCTCGAGGGGTAACTCCTCAACTGAGCCATACATGGCAATTCATTATTTCTTGTTATCTCATGCATCACACAAGCAGCGTGGGTTTATAGGCATCAATATATTTGCCTATTGGTTTGTTCCTCAAACCGAAACCCATCAAGACCAAGTTGCTACTCAAAGAGCCCTCGACTTCTATTTTGGTTGGGTTATGCATCCTTTGGTGTATGGAGAGTACCCTCAAGTAATGAAAAAGAATGCAGGCTCTAGAATTCCAACGTTCACCAGTGCTGAGTCTTCAAAGGTCAAGGGTTCCTTCGACTTCATTGGACTTAATTACTATAACACATTGTACGCCAGTGACAACTCTGCCGCATTAAACATTCAAAACAGAGACTATGTAGCGGATTCGGCAACCCAGATTTCTCCTTTGGATTACAATACATCAACGTTGGAGTTTCCGATAACACCTTGGGGTATGGAAGGACTGTTGGAATATATCAAACAACACTACGGCAATCCTCCCATATATATCCATGAAAATGGCCAACAAACTCGACGTAATTCTTCGTTGGAAGATTGGTCCAGAATCGAATATTTGCATGGACACGTTCACAGTTTGCTTAATGTTATAAGGAATGGATCAAATGCTAGAGGCTATTTTACCTGGTCTCTCTTGGATTCAATTGAGCTTTTGGGTGGCTATGAAATAAGCTACGGCCTTTATTACATCGATTTGGACGATCCGGATTTAAAAAGGCAGCCTAAACTCTCTGCACATTGGTACTCAAAGTTTCTGAAGAACAAAAACATCACTCCACGTTCAGATTCAGATGCTGATCAACAATACTTCTTTCAGTAG

Protein Analysis

510

Amino Acids

58.14

Weight (kDa)

5.46

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 47 - 494 4.5e-134 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1304
AccB7I CCANNNNNTGG 1 cut(s) 357
AccIII TCCGGA 1 cut(s) 1417
AciI CCGC 3 cut(s) 194, 1044, 1076
AclI AACGTT 2 cut(s) 950, 1121
AclWI GGATC 2 cut(s) 1321, 1409
AcoI YGGCCR 1 cut(s) 1216
AcsI RAATTY 1 cut(s) 942
AcuI CTGAAG 1 cut(s) 1490
AfaI GTAC 5 cut(s) 408, 630, 908, 1025, 1457
AfiI CCNNNNNNNGG 1 cut(s) 357
AflIII ACRYGT 1 cut(s) 1279
AgsI TTSAA 3 cut(s) 972, 1058, 1356
AjnI CCWGG 2 cut(s) 177, 1337
AleI CACNNNNGTG 1 cut(s) 477
AluBI AGCT 4 cut(s) 86, 677, 1363, 1386
AluI AGCT 4 cut(s) 86, 677, 1363, 1386
Alw26I GTCTC 2 cut(s) 1059, 1347
AlwI GGATC 2 cut(s) 1321, 1409
AlwNI CAGNNNCTG 1 cut(s) 1508
Ama87I CYCGRG 2 cut(s) 632, 697
Aor13HI TCCGGA 1 cut(s) 1417
AoxI GGCC 2 cut(s) 1216, 1390
ApeKI GCWGC 3 cut(s) 191, 769, 1432
ApoI RAATTY 1 cut(s) 942
ArsI GACNNNNNNTTYG 4 cut(s) 137, 169, 854, 886
AspS9I GGNCC 3 cut(s) 196, 386, 1254
AsuHPI GGTGA 1 cut(s) 946
AsuII TTCGAA 1 cut(s) 570
AvaI CYCGRG 2 cut(s) 632, 697
AvaII GGWCC 3 cut(s) 196, 386, 1254
BalI TGGCCA 1 cut(s) 1218
BanII GRGCYC 1 cut(s) 859
BbsI GAAGAC 1 cut(s) 960
BbvI GCAGC 3 cut(s) 178, 781, 1444
BccI CCATC 4 cut(s) 310, 359, 510, 837
BceAI ACGGC 2 cut(s) 1201, 1405
BciT130I CCWGG 2 cut(s) 179, 1339
BciVI GTATCC 2 cut(s) 74, 316
BclI TGATCA 1 cut(s) 1510
BcoDI GTCTC 2 cut(s) 1059, 1347
BfaI CTAG 3 cut(s) 101, 939, 1323
BfuI GTATCC 2 cut(s) 74, 316
BisI GCNGC 4 cut(s) 192, 770, 1044, 1433
BlsI GCNGC 4 cut(s) 193, 771, 1045, 1434
Bme1390I CCNGG 2 cut(s) 179, 1339
Bme18I GGWCC 3 cut(s) 196, 386, 1254
BmeT110I CYCGRG 2 cut(s) 632, 697
BmgT120I GGNCC 3 cut(s) 196, 386, 1254
BmiI GGNNCC 3 cut(s) 259, 388, 985
BmrFI CCNGG 2 cut(s) 179, 1339
BmsI GCATC 6 cut(s) 170, 228, 767, 795, 895, 1495
BpiI GAAGAC 1 cut(s) 960
Bpu14I TTCGAA 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 897
Bsa29I ATCGAT 1 cut(s) 1404
BsaBI GATNNNNATC 2 cut(s) 285, 1509
BsaI GGTCTC 1 cut(s) 1347
BsaJI CCNNGG 1 cut(s) 1142
BsaWI WCCGGW 3 cut(s) 142, 263, 1417
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse1I ACTGG 3 cut(s) 331, 957, 1029
Bse3DI GCAATG 1 cut(s) 112
Bse8I GATNNNNATC 2 cut(s) 285, 1509
BseAI TCCGGA 1 cut(s) 1417
BseBI CCWGG 2 cut(s) 179, 1339
BseCI ATCGAT 1 cut(s) 1404
BseDI CCNNGG 1 cut(s) 1142
BseGI GGATG 3 cut(s) 161, 521, 886
BseJI GATNNNNATC 2 cut(s) 285, 1509
BseLI CCNNNNNNNGG 1 cut(s) 357
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 2 cut(s) 708, 954
BseNI ACTGG 3 cut(s) 331, 957, 1029
BseRI GAGGAG 3 cut(s) 23, 157, 700
BseXI GCAGC 3 cut(s) 178, 781, 1444
BsgI GTGCAG 1 cut(s) 1431
Bsh1285I CGRYCG 1 cut(s) 586
BshFI GGCC 2 cut(s) 1218, 1392
BshVI ATCGAT 1 cut(s) 1404
BsiEI CGRYCG 1 cut(s) 586
BsiHKCI CYCGRG 2 cut(s) 632, 697
BsiSI CCGG 3 cut(s) 143, 264, 1418
BslI CCNNNNNNNGG 1 cut(s) 357
BsmAI GTCTC 2 cut(s) 1059, 1347
BsmI GAATGC 1 cut(s) 934
BsnI GGCC 2 cut(s) 1218, 1392
Bso31I GGTCTC 1 cut(s) 1347
BsoBI CYCGRG 2 cut(s) 632, 697
Bsp119I TTCGAA 1 cut(s) 570
Bsp1286I GDGCHC 1 cut(s) 859
Bsp13I TCCGGA 1 cut(s) 1417
Bsp1407I TGTACA 1 cut(s) 406
Bsp143I GATC 5 cut(s) 481, 583, 1313, 1414, 1510
BspACI CCGC 3 cut(s) 194, 1044, 1076
BspANI GGCC 2 cut(s) 1218, 1392
BspCNI CTCAG 2 cut(s) 709, 955
BspDI ATCGAT 1 cut(s) 1404
BspEI TCCGGA 1 cut(s) 1417
BspLI GGNNCC 3 cut(s) 259, 388, 985
BspPI GGATC 2 cut(s) 1321, 1409
BspT104I TTCGAA 1 cut(s) 570
BspTNI GGTCTC 1 cut(s) 1347
BsrDI GCAATG 1 cut(s) 112
BsrGI TGTACA 1 cut(s) 406
BsrI ACTGG 3 cut(s) 331, 957, 1029
BssECI CCNNGG 1 cut(s) 1142
BssMI GATC 5 cut(s) 481, 583, 1313, 1414, 1510
BssT1I CCWWGG 1 cut(s) 1142
Bst2UI CCWGG 2 cut(s) 179, 1339
Bst4CI ACNGT 4 cut(s) 479, 576, 1161, 1289
Bst6I CTCTTC 1 cut(s) 376
BstAUI TGTACA 1 cut(s) 406
BstBI TTCGAA 1 cut(s) 570
BstC8I GCNNGC 1 cut(s) 934
BstDEI CTNAG 2 cut(s) 717, 963
BstF5I GGATG 3 cut(s) 161, 521, 886
BstKTI GATC 5 cut(s) 484, 586, 1316, 1417, 1513
BstMAI GTCTC 2 cut(s) 1059, 1347
BstMBI GATC 5 cut(s) 481, 583, 1313, 1414, 1510
BstMCI CGRYCG 1 cut(s) 586
BstMWI GCNNNNNNNGC 1 cut(s) 1082
BstNI CCWGG 2 cut(s) 179, 1339
BstSCI CCNGG 2 cut(s) 177, 1337
BstV1I GCAGC 3 cut(s) 178, 781, 1444
BstV2I GAAGAC 1 cut(s) 960
BstXI CCANNNNNNTGG 1 cut(s) 1214
Bsu15I ATCGAT 1 cut(s) 1404
BsuI GTATCC 2 cut(s) 74, 316
BsuRI GGCC 2 cut(s) 1218, 1392
BsuTUI ATCGAT 1 cut(s) 1404
BtsCI GGATG 3 cut(s) 161, 521, 886
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 4 cut(s) 484, 546, 964, 1036
Cac8I GCNNGC 1 cut(s) 934
CaiI CAGNNNCTG 1 cut(s) 1508
Cfr13I GGNCC 3 cut(s) 196, 386, 1254
ClaI ATCGAT 1 cut(s) 1404
CsiI ACCWGGT 2 cut(s) 177, 1337
Csp6I GTAC 5 cut(s) 407, 629, 907, 1024, 1456
CspCI CAANNNNNGTGG 2 cut(s) 754, 789
CviAII CATG 8 cut(s) 239, 254, 357, 461, 727, 755, 1208, 1274
CviQI GTAC 5 cut(s) 407, 629, 907, 1024, 1456
DdeI CTNAG 2 cut(s) 717, 963
DpnI GATC 5 cut(s) 483, 585, 1315, 1416, 1512
DpnII GATC 5 cut(s) 481, 583, 1313, 1414, 1510
DraI TTTAAA 2 cut(s) 118, 1425
EaeI YGGCCR 1 cut(s) 1216
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 1142
Eco24I GRGCYC 1 cut(s) 859
Eco31I GGTCTC 1 cut(s) 1347
Eco47I GGWCC 3 cut(s) 196, 386, 1254
Eco57I CTGAAG 1 cut(s) 1490
Eco88I CYCGRG 2 cut(s) 632, 697
EcoO109I RGGNCCY 1 cut(s) 386
EcoRI GAATTC 1 cut(s) 942
EcoRII CCWGG 2 cut(s) 177, 1337
EcoT14I CCWWGG 1 cut(s) 1142
EcoT22I ATGCAT 3 cut(s) 255, 760, 888
EcoT38I GRGCYC 1 cut(s) 859
ErhI CCWWGG 1 cut(s) 1142
FaeI CATG 8 cut(s) 242, 257, 360, 464, 730, 758, 1211, 1277
FalI AAGNNNNNCTT 2 cut(s) 971, 1003
FatI CATG 8 cut(s) 238, 253, 356, 460, 726, 754, 1207, 1273
FauNDI CATATG 1 cut(s) 553
FbaI TGATCA 1 cut(s) 1510
Fnu4HI GCNGC 4 cut(s) 192, 770, 1044, 1433
FokI GGATG 3 cut(s) 148, 528, 873
FriOI GRGCYC 1 cut(s) 859
Fsp4HI GCNGC 4 cut(s) 192, 770, 1044, 1433
FspBI CTAG 3 cut(s) 101, 939, 1323
GluI GCNGC 4 cut(s) 192, 770, 1044, 1433
HaeIII GGCC 2 cut(s) 1218, 1392
HapII CCGG 3 cut(s) 143, 264, 1418
Hin1II CATG 8 cut(s) 242, 257, 360, 464, 730, 758, 1211, 1277
HpaII CCGG 3 cut(s) 143, 264, 1418
HphI GGTGA 1 cut(s) 946
Hpy166II GTNNAC 3 cut(s) 407, 954, 1285
Hpy188I TCNGA 4 cut(s) 1134, 1470, 1498, 1504
Hpy188III TCNNGA 5 cut(s) 363, 833, 939, 1257, 1418
Hpy8I GTNNAC 3 cut(s) 407, 954, 1285
Hpy99I CGWCG 2 cut(s) 503, 1233
HpyAV CCTTC 4 cut(s) 179, 665, 997, 1148
HpyCH4III ACNGT 4 cut(s) 479, 576, 1161, 1289
HpyCH4IV ACGT 5 cut(s) 950, 1121, 1231, 1281, 1492
HpyF10VI GCNNNNNNNGC 1 cut(s) 1082
HpyF3I CTNAG 2 cut(s) 717, 963
HpySE526I ACGT 5 cut(s) 950, 1121, 1231, 1281, 1492
Hsp92II CATG 8 cut(s) 242, 257, 360, 464, 730, 758, 1211, 1277
Kpn2I TCCGGA 1 cut(s) 1417
Ksp22I TGATCA 1 cut(s) 1510
Kzo9I GATC 5 cut(s) 481, 583, 1313, 1414, 1510
LmnI GCTCC 3 cut(s) 36, 257, 682
Lsp1109I GCAGC 3 cut(s) 178, 781, 1444
LweI GCATC 6 cut(s) 170, 228, 767, 795, 895, 1495
MabI ACCWGGT 2 cut(s) 177, 1337
MaeI CTAG 3 cut(s) 101, 939, 1323
MaeII ACGT 5 cut(s) 950, 1121, 1231, 1281, 1492
MaeIII GTNAC 3 cut(s) 463, 704, 1031
MalI GATC 5 cut(s) 483, 585, 1315, 1416, 1512
MboI GATC 5 cut(s) 481, 583, 1313, 1414, 1510
MboII GAAGA 8 cut(s) 32, 47, 314, 393, 960, 1230, 1259, 1483
MfeI CAATTG 2 cut(s) 26, 1356
MhlI GDGCHC 1 cut(s) 859
MlsI TGGCCA 1 cut(s) 1218
MluCI AATT 8 cut(s) 26, 51, 691, 732, 942, 1006, 1234, 1356
MluNI TGGCCA 1 cut(s) 1218
MlyI GAGTC 2 cut(s) 360, 974
MmeI TCCRAC 4 cut(s) 971, 1104, 1143, 1224
Mox20I TGGCCA 1 cut(s) 1218
Mph1103I ATGCAT 3 cut(s) 255, 760, 888
MroI TCCGGA 1 cut(s) 1417
MscI TGGCCA 1 cut(s) 1218
MseI TTAA 6 cut(s) 117, 690, 1005, 1049, 1296, 1424
MslI CAYNNNNRTG 3 cut(s) 477, 667, 1212
Msp20I TGGCCA 1 cut(s) 1218
MspI CCGG 3 cut(s) 143, 264, 1418
MspR9I CCNGG 2 cut(s) 179, 1339
MunI CAATTG 2 cut(s) 26, 1356
Mva1269I GAATGC 1 cut(s) 934
MvaI CCWGG 2 cut(s) 179, 1339
MwoI GCNNNNNNNGC 1 cut(s) 1082
NdeI CATATG 1 cut(s) 553
NdeII GATC 5 cut(s) 481, 583, 1313, 1414, 1510
NlaIII CATG 8 cut(s) 242, 257, 360, 464, 730, 758, 1211, 1277
NlaIV GGNNCC 3 cut(s) 259, 388, 985
NmuCI GTSAC 1 cut(s) 1031
NsiI ATGCAT 3 cut(s) 255, 760, 888
NspV TTCGAA 1 cut(s) 570
OliI CACNNNNGTG 1 cut(s) 477
PaeR7I CTCGAG 1 cut(s) 697
PcsI WCGNNNNNNNCGW 1 cut(s) 1410
PctI GAATGC 1 cut(s) 934
PfeI GAWTC 8 cut(s) 13, 394, 450, 651, 1079, 1260, 1352, 1499
PflMI CCANNNNNTGG 1 cut(s) 357
PkrI GCNGC 4 cut(s) 193, 771, 1045, 1434
Ple19I CGATCG 1 cut(s) 586
PleI GAGTC 2 cut(s) 360, 973
PpsI GAGTC 2 cut(s) 360, 973
PpuMI RGGWCCY 1 cut(s) 386
PsiI TTATAA 1 cut(s) 1304
Psp1406I AACGTT 2 cut(s) 950, 1121
Psp5II RGGWCCY 1 cut(s) 386
Psp6I CCWGG 2 cut(s) 177, 1337
PspGI CCWGG 2 cut(s) 177, 1337
PspN4I GGNNCC 3 cut(s) 259, 388, 985
PspPI GGNCC 3 cut(s) 196, 386, 1254
PspPPI RGGWCCY 1 cut(s) 386
PspXI VCTCGAGB 1 cut(s) 697
PstNI CAGNNNCTG 1 cut(s) 1508
PvuI CGATCG 1 cut(s) 586
RsaI GTAC 5 cut(s) 408, 630, 908, 1025, 1457
RsaNI GTAC 5 cut(s) 407, 629, 907, 1024, 1456
RseI CAYNNNNRTG 3 cut(s) 477, 667, 1212
SaqAI TTAA 6 cut(s) 117, 690, 1005, 1049, 1296, 1424
SatI GCNGC 4 cut(s) 192, 770, 1044, 1433
Sau3AI GATC 5 cut(s) 481, 583, 1313, 1414, 1510
Sau96I GGNCC 3 cut(s) 196, 386, 1254
SchI GAGTC 2 cut(s) 360, 974
ScrFI CCNGG 2 cut(s) 179, 1339
SduI GDGCHC 1 cut(s) 859
SexAI ACCWGGT 2 cut(s) 177, 1337
SfaNI GCATC 6 cut(s) 170, 228, 767, 795, 895, 1495
Sfr274I CTCGAG 1 cut(s) 697
SfuI TTCGAA 1 cut(s) 570
SinI GGWCC 3 cut(s) 196, 386, 1254
SlaI CTCGAG 1 cut(s) 697
SmiMI CAYNNNNRTG 3 cut(s) 477, 667, 1212
SmlI CTYRAG 2 cut(s) 697, 912
SmoI CTYRAG 2 cut(s) 697, 912
Sse9I AATT 8 cut(s) 26, 51, 691, 732, 942, 1006, 1234, 1356
SsiI CCGC 3 cut(s) 194, 1044, 1076
SspI AATATT 2 cut(s) 413, 1268
SspMI CTAG 3 cut(s) 101, 939, 1323
StyD4I CCNGG 2 cut(s) 177, 1337
StyI CCWWGG 1 cut(s) 1142
TaaI ACNGT 4 cut(s) 479, 576, 1161, 1289
TaiI ACGT 5 cut(s) 953, 1124, 1234, 1284, 1495
TaqI TCGA 9 cut(s) 498, 570, 586, 698, 861, 990, 1228, 1263, 1404
TasI AATT 8 cut(s) 26, 51, 691, 732, 942, 1006, 1234, 1356
TatI WGTACW 2 cut(s) 406, 628
TauI GCSGC 1 cut(s) 1046
TfiI GAWTC 8 cut(s) 13, 394, 450, 651, 1079, 1260, 1352, 1499
Tru1I TTAA 6 cut(s) 117, 690, 1005, 1049, 1296, 1424
Tru9I TTAA 6 cut(s) 117, 690, 1005, 1049, 1296, 1424
TscAI CASTG 4 cut(s) 484, 553, 964, 1036
TseFI GTSAC 1 cut(s) 1031
TseI GCWGC 3 cut(s) 191, 769, 1432
Tsp45I GTSAC 1 cut(s) 1031
TspDTI ATGAA 7 cut(s) 37, 623, 725, 935, 985, 1224, 1392
TspRI CASTG 4 cut(s) 484, 553, 964, 1036
Van91I CCANNNNNTGG 1 cut(s) 357
VpaK11BI GGWCC 3 cut(s) 196, 386, 1254
XapI RAATTY 1 cut(s) 942
XbaI TCTAGA 1 cut(s) 938
XhoI CTCGAG 1 cut(s) 697
XspI CTAG 3 cut(s) 101, 939, 1323
Zsp2I ATGCAT 3 cut(s) 255, 760, 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.