AT1G45191

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
17115762 .. 17119246
3485 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G45191.6

Sequence Viewer

Length: 1590 bp
ATGGAAGATGTTTTGACTCTCATTACCATGATTGTGTTGCTTCTTCTAGCTTTCCATGGATTTGGAAAATGCAGTAGCGATCTTTACAGCAGGAGCGATTTCCCGGAAGGCTTCGTTTTCGGAGCCGGGATATCTGCTTATCAGTGGGAAGGAGCTGTTGATGAAGATGGGAGGAAACCTAGCGTCTGGGATACTTTCCTTCACTGTCGACTGGACTGTCCGAATTTCTCATGTGTATACAGAGGTAAAATGGATAATGGAGACATAGCTTGTGATGGATATCACAAGTATAAGGAAGATGTGCAGCTCATGGCCGAAACTGGCTTACATACATTCAGATTCTCCATCTCTTGGTCTAGACTCATCTCTAATGGAAGAGGTTCCATTAACCCGAAAGGTCTACAGTTCTACAAGAATTTCATTCAAGAACTTGTCAAACATGGAATTGAGCCACATGTTACACTACATCACTACGATTTTCCTCAATATCTCGAGGATGACTATGGAGGCTGGACCAACCGCAAAATCATCAAAGACTTTACCGCTTATGCAGATGTTTGCTTTAGAGAGTTTGGGAACCACGTCAAATTCTGGACCACGATCAACGAGGCTAATATATTTACTATTGGAGGTTACAACGATGGGAATTCACCGCCTGGTCGTTGCTCCTTTCCGGGCAGAAACTGCACGTTAGGGAACTCTTCCACTGAAACATATATCGTAGGCCATAACTTGCTGCTTGCTCACGCCTCTGTTTCAAGACTATATAAGCAAAAGTACAAGGATATACAAGGAGGTTCTGTTGGATTTAGTTTATTTGCAATGAATTTTACTCCTTCTACAAACTCCAAGGATGATGAAATCGCAACGAAAAGAGCCAACGATTTCTACCTCGGATGGATGCTTGAGCCTCTTATATATGGAGACTATCCTGATGTGATGAAAAGAACCATTGGATCAAGACTGCCAGTTTTCTCGAAGGAAGAATCAGAACAAGTGAAAGGCTCATCTGACTTCATAGGAGTCATTCACTATCTCACGGCTTTGGTCACAAACATCGATATCAACCCTTCACTTTCAGGAATTCCAGATTTTAACTCAGACATGGGTGAATCTATTAATATTTTATCTATGAGGGTAAGAATTTCAAGGCTACCAAATTCAGATGAAAAGTGCCTAATATTCTTTATAACTTTAAGCATCCTAGAGTATATAAAGCAGAGCTATGGCAATCCTCCAGTCTACATTCTTGAGAATGGTAAAACAATGAACCAAGATTTGGAGCTGCAACAAAAGGACACACCAAGGATTGAGTACTTAGATGCTTACATTGGTGCGGTGCTCAAAGCTGTTAGGAATGGATCAGACACGAGAGGCTACTTCGTATGGTCATTTATGGATTTGTACGAATTACTAAACGGATACAAGAGTAGTTTTGGATTGTACTCTGTCAATTTCAGTGATCCCCATCGCAAGAGATCTCCCAAACTCTCTGCTCACTGGTACTCTGGTTTTCTCAAGGGCAAACCCACATTTCTTGGTTCCCAAGGCATCACACAATTGCATAGCAACTTCTCTTCTTCCAGATAG

Protein Analysis

529

Amino Acids

59.94

Weight (kDa)

6.32

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 32 - 495 2.9e-136 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1190
AasI GACNNNNNNGTC 1 cut(s) 216
AccB7I CCANNNNNTGG 2 cut(s) 351, 1279
AccI GTMKAC 4 cut(s) 208, 237, 400, 1242
AciI CCGC 4 cut(s) 520, 543, 653, 1337
AclWI GGATC 3 cut(s) 964, 1369, 1457
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 8 cut(s) 223, 415, 587, 646, 826, 1083, 1143, 1159
AfaI GTAC 5 cut(s) 779, 1316, 1406, 1445, 1505
AfiI CCNNNNNNNGG 2 cut(s) 351, 1279
AflIII ACRYGT 1 cut(s) 454
AgsI TTSAA 3 cut(s) 425, 759, 1149
AjiI CACGTC 1 cut(s) 583
AjnI CCWGG 1 cut(s) 655
AjuI GAANNNNNNNTTGG 2 cut(s) 1262, 1294
AluBI AGCT 7 cut(s) 50, 155, 269, 307, 1224, 1285, 1349
AluI AGCT 7 cut(s) 50, 155, 269, 307, 1224, 1285, 1349
Alw21I GWGCWC 1 cut(s) 1344
Alw26I GTCTC 2 cut(s) 255, 918
AlwI GGATC 3 cut(s) 964, 1369, 1457
AlwNI CAGNNNCTG 1 cut(s) 684
Ama87I CYCGRG 1 cut(s) 491
AoxI GGCC 2 cut(s) 312, 724
ApeKI GCWGC 3 cut(s) 304, 736, 1285
ApoI RAATTY 8 cut(s) 223, 415, 587, 646, 826, 1083, 1143, 1159
AseI ATTAAT 1 cut(s) 1119
Asp700I GAANNNNTTC 1 cut(s) 379
AspS9I GGNCC 2 cut(s) 513, 594
AsuC2I CCSGG 3 cut(s) 104, 127, 675
AsuHPI GGTGA 2 cut(s) 642, 1121
AvaI CYCGRG 1 cut(s) 491
AvaII GGWCC 2 cut(s) 513, 594
BaeI ACNNNNGTAYC 4 cut(s) 1414, 1447, 1495, 1528
BauI CACGAG 1 cut(s) 1369
Bbv12I GWGCWC 1 cut(s) 1344
BbvI GCAGC 3 cut(s) 316, 723, 1272
BccI CCATC 6 cut(s) 161, 269, 353, 635, 891, 1476
BceAI ACGGC 1 cut(s) 1056
BciT130I CCWGG 1 cut(s) 657
BciVI GTATCC 2 cut(s) 184, 1415
BcnI CCSGG 3 cut(s) 104, 127, 675
BcoDI GTCTC 2 cut(s) 255, 918
BfaI CTAG 4 cut(s) 47, 180, 357, 1205
BfmI CTRYAG 1 cut(s) 401
BfuI GTATCC 2 cut(s) 184, 1415
BglII AGATCT 1 cut(s) 1478
BisI GCNGC 3 cut(s) 305, 737, 1286
BlsI GCNGC 3 cut(s) 306, 738, 1287
BmcAI AGTACT 1 cut(s) 1316
Bme1390I CCNGG 4 cut(s) 104, 127, 657, 675
Bme18I GGWCC 2 cut(s) 513, 594
BmeT110I CYCGRG 1 cut(s) 491
BmgBI CACGTC 1 cut(s) 583
BmgT120I GGNCC 2 cut(s) 513, 594
BmiI GGNNCC 4 cut(s) 124, 382, 578, 1543
BmrFI CCNGG 4 cut(s) 104, 127, 657, 675
BmsI GCATC 4 cut(s) 891, 1209, 1312, 1560
BpmI CTGGAG 1 cut(s) 1221
BpuEI CTTGAG 3 cut(s) 926, 1271, 1502
BpuMI CCSGG 3 cut(s) 104, 127, 675
Bsa29I ATCGAT 1 cut(s) 1059
BsaBI GATNNNNATC 2 cut(s) 279, 1467
BsaJI CCNNGG 5 cut(s) 55, 849, 892, 1304, 1546
BsaXI ACNNNNNCTCC 2 cut(s) 786, 816
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 1279
Bse1I ACTGG 5 cut(s) 216, 325, 968, 1238, 1505
Bse3DI GCAATG 1 cut(s) 828
Bse8I GATNNNNATC 2 cut(s) 279, 1467
BseBI CCWGG 1 cut(s) 657
BseCI ATCGAT 1 cut(s) 1059
BseDI CCNNGG 5 cut(s) 55, 849, 892, 1304, 1546
BseGI GGATG 5 cut(s) 502, 859, 902, 906, 1200
BseJI GATNNNNATC 2 cut(s) 279, 1467
BseLI CCNNNNNNNGG 2 cut(s) 351, 1279
BseMI GCAATG 1 cut(s) 828
BseMII CTCAG 1 cut(s) 1113
BseNI ACTGG 5 cut(s) 216, 325, 968, 1238, 1505
BseXI GCAGC 3 cut(s) 316, 723, 1272
BsgI GTGCAG 2 cut(s) 323, 670
BshFI GGCC 2 cut(s) 314, 726
BshVI ATCGAT 1 cut(s) 1059
BsiHKAI GWGCWC 1 cut(s) 1344
BsiHKCI CYCGRG 1 cut(s) 491
BsiSI CCGG 3 cut(s) 104, 126, 674
BslI CCNNNNNNNGG 2 cut(s) 351, 1279
BsmAI GTCTC 2 cut(s) 255, 918
BsnI GGCC 2 cut(s) 314, 726
BsoBI CYCGRG 1 cut(s) 491
Bsp1286I GDGCHC 1 cut(s) 1344
Bsp143I GATC 6 cut(s) 79, 600, 956, 1361, 1462, 1478
Bsp19I CCATGG 1 cut(s) 55
BspACI CCGC 4 cut(s) 520, 543, 653, 1337
BspANI GGCC 2 cut(s) 314, 726
BspCNI CTCAG 1 cut(s) 1112
BspDI ATCGAT 1 cut(s) 1059
BspLI GGNNCC 4 cut(s) 124, 382, 578, 1543
BspPI GGATC 3 cut(s) 964, 1369, 1457
BsrDI GCAATG 1 cut(s) 828
BsrI ACTGG 5 cut(s) 216, 325, 968, 1238, 1505
BssECI CCNNGG 5 cut(s) 55, 849, 892, 1304, 1546
BssMI GATC 6 cut(s) 79, 600, 956, 1361, 1462, 1478
BssNAI GTATAC 1 cut(s) 238
BssSI CACGAG 1 cut(s) 1369
BssT1I CCWWGG 4 cut(s) 55, 849, 1304, 1546
Bst1107I GTATAC 1 cut(s) 238
Bst2BI CACGAG 1 cut(s) 1369
Bst2UI CCWGG 1 cut(s) 657
Bst4CI ACNGT 3 cut(s) 206, 218, 405
Bst6I CTCTTC 3 cut(s) 370, 706, 1582
BstAPI GCANNNNNTGC 1 cut(s) 684
BstC8I GCNNGC 1 cut(s) 741
BstDEI CTNAG 2 cut(s) 1099, 1318
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 5 cut(s) 502, 859, 902, 906, 1200
BstKTI GATC 6 cut(s) 82, 603, 959, 1364, 1465, 1481
BstMAI GTCTC 2 cut(s) 255, 918
BstMBI GATC 6 cut(s) 79, 600, 956, 1361, 1462, 1478
BstMWI GCNNNNNNNGC 1 cut(s) 684
BstNI CCWGG 1 cut(s) 657
BstNSI RCATGY 1 cut(s) 458
BstSCI CCNGG 4 cut(s) 102, 125, 655, 673
BstSFI CTRYAG 1 cut(s) 401
BstV1I GCAGC 3 cut(s) 316, 723, 1272
BstX2I RGATCY 1 cut(s) 1478
BstXI CCANNNNNNTGG 1 cut(s) 62
BstYI RGATCY 1 cut(s) 1478
BstZ17I GTATAC 1 cut(s) 238
Bsu15I ATCGAT 1 cut(s) 1059
BsuI GTATCC 2 cut(s) 184, 1415
BsuRI GGCC 2 cut(s) 314, 726
BsuTUI ATCGAT 1 cut(s) 1059
BtgI CCRYGG 1 cut(s) 55
BtgZI GCGATG 1 cut(s) 1454
BtrI CACGTC 1 cut(s) 583
BtsCI GGATG 5 cut(s) 502, 859, 902, 906, 1200
BtsIMutI CAGTG 5 cut(s) 149, 202, 705, 1465, 1498
Cac8I GCNNGC 1 cut(s) 741
CaiI CAGNNNCTG 1 cut(s) 684
Cfr13I GGNCC 2 cut(s) 513, 594
ClaI ATCGAT 1 cut(s) 1059
CseI GACGC 1 cut(s) 172
Csp6I GTAC 5 cut(s) 778, 1315, 1405, 1444, 1504
CspCI CAANNNNNGTGG 2 cut(s) 1519, 1554
CviAII CATG 7 cut(s) 28, 56, 231, 310, 440, 455, 1105
CviQI GTAC 5 cut(s) 778, 1315, 1405, 1444, 1504
DdeI CTNAG 2 cut(s) 1099, 1318
DpnI GATC 6 cut(s) 81, 602, 958, 1363, 1464, 1480
DpnII GATC 6 cut(s) 79, 600, 956, 1361, 1462, 1478
DrdI GACNNNNNNGTC 1 cut(s) 216
DseDI GACNNNNNNGTC 1 cut(s) 216
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 3 cut(s) 370, 706, 1582
EarI CTCTTC 3 cut(s) 370, 706, 1582
Eco130I CCWWGG 4 cut(s) 55, 849, 1304, 1546
Eco32I GATATC 3 cut(s) 132, 281, 1063
Eco47I GGWCC 2 cut(s) 513, 594
Eco88I CYCGRG 1 cut(s) 491
EcoRI GAATTC 2 cut(s) 646, 1083
EcoRII CCWGG 1 cut(s) 655
EcoRV GATATC 3 cut(s) 132, 281, 1063
EcoT14I CCWWGG 4 cut(s) 55, 849, 1304, 1546
ErhI CCWWGG 4 cut(s) 55, 849, 1304, 1546
FaeI CATG 7 cut(s) 31, 59, 234, 313, 443, 458, 1108
FatI CATG 7 cut(s) 27, 55, 230, 309, 439, 454, 1104
FblI GTMKAC 4 cut(s) 208, 237, 400, 1242
Fnu4HI GCNGC 3 cut(s) 305, 737, 1286
FokI GGATG 5 cut(s) 509, 866, 909, 913, 1187
Fsp4HI GCNGC 3 cut(s) 305, 737, 1286
FspBI CTAG 4 cut(s) 47, 180, 357, 1205
GluI GCNGC 3 cut(s) 305, 737, 1286
GsuI CTGGAG 1 cut(s) 1221
HaeIII GGCC 2 cut(s) 314, 726
HapII CCGG 3 cut(s) 104, 126, 674
HgaI GACGC 1 cut(s) 172
Hin1II CATG 7 cut(s) 31, 59, 234, 313, 443, 458, 1108
HincII GTYRAC 1 cut(s) 209
HindII GTYRAC 1 cut(s) 209
HinfI GANTC 6 cut(s) 16, 339, 360, 986, 1023, 1112
HpaII CCGG 3 cut(s) 104, 126, 674
HphI GGTGA 2 cut(s) 642, 1121
Hpy166II GTNNAC 4 cut(s) 209, 238, 401, 1243
Hpy188I TCNGA 9 cut(s) 122, 222, 338, 896, 991, 1012, 1102, 1165, 1366
Hpy8I GTNNAC 4 cut(s) 209, 238, 401, 1243
HpyAV CCTTC 6 cut(s) 101, 143, 209, 846, 973, 1080
HpyCH4III ACNGT 3 cut(s) 206, 218, 405
HpyCH4IV ACGT 2 cut(s) 582, 689
HpyCH4V TGCA 7 cut(s) 72, 304, 551, 687, 821, 1288, 1564
HpyF10VI GCNNNNNNNGC 1 cut(s) 684
HpyF3I CTNAG 2 cut(s) 1099, 1318
HpySE526I ACGT 2 cut(s) 582, 689
Hsp92II CATG 7 cut(s) 31, 59, 234, 313, 443, 458, 1108
Kzo9I GATC 6 cut(s) 79, 600, 956, 1361, 1462, 1478
LmnI GCTCC 5 cut(s) 93, 122, 152, 671, 1282
Lsp1109I GCAGC 3 cut(s) 316, 723, 1272
LweI GCATC 4 cut(s) 891, 1209, 1312, 1560
MaeI CTAG 4 cut(s) 47, 180, 357, 1205
MaeII ACGT 2 cut(s) 582, 689
MaeIII GTNAC 3 cut(s) 457, 632, 1048
MalI GATC 6 cut(s) 81, 602, 958, 1363, 1464, 1480
MboI GATC 6 cut(s) 79, 600, 956, 1361, 1462, 1478
MboII GAAGA 9 cut(s) 17, 35, 176, 308, 387, 693, 995, 1569, 1572
MfeI CAATTG 1 cut(s) 1559
MflI RGATCY 1 cut(s) 1478
MhlI GDGCHC 1 cut(s) 1344
MlyI GAGTC 3 cut(s) 10, 354, 1032
MmeI TCCRAC 1 cut(s) 784
MroXI GAANNNNTTC 1 cut(s) 379
MseI TTAA 4 cut(s) 387, 1095, 1119, 1196
MslI CAYNNNNRTG 2 cut(s) 26, 32
MspI CCGG 3 cut(s) 104, 126, 674
MspR9I CCNGG 4 cut(s) 104, 127, 657, 675
MunI CAATTG 1 cut(s) 1559
MvaI CCWGG 1 cut(s) 657
MwoI GCNNNNNNNGC 1 cut(s) 684
NciI CCSGG 3 cut(s) 104, 127, 675
NcoI CCATGG 1 cut(s) 55
NdeII GATC 6 cut(s) 79, 600, 956, 1361, 1462, 1478
NlaIII CATG 7 cut(s) 31, 59, 234, 313, 443, 458, 1108
NlaIV GGNNCC 4 cut(s) 124, 382, 578, 1543
NmuCI GTSAC 1 cut(s) 1048
NspI RCATGY 1 cut(s) 458
PaeR7I CTCGAG 1 cut(s) 491
PciI ACATGT 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 379
PfeI GAWTC 3 cut(s) 339, 986, 1112
PflMI CCANNNNNTGG 2 cut(s) 351, 1279
PfoI TCCNGGA 1 cut(s) 102
PkrI GCNGC 3 cut(s) 306, 738, 1287
PleI GAGTC 3 cut(s) 10, 354, 1031
PpsI GAGTC 3 cut(s) 10, 354, 1031
PscI ACATGT 1 cut(s) 454
PshBI ATTAAT 1 cut(s) 1119
PsiI TTATAA 1 cut(s) 1190
Psp6I CCWGG 1 cut(s) 655
PspGI CCWGG 1 cut(s) 655
PspN4I GGNNCC 4 cut(s) 124, 382, 578, 1543
PspPI GGNCC 2 cut(s) 513, 594
PstNI CAGNNNCTG 1 cut(s) 684
PsuI RGATCY 1 cut(s) 1478
RsaI GTAC 5 cut(s) 779, 1316, 1406, 1445, 1505
RsaNI GTAC 5 cut(s) 778, 1315, 1405, 1444, 1504
RseI CAYNNNNRTG 2 cut(s) 26, 32
SalI GTCGAC 1 cut(s) 207
SaqAI TTAA 4 cut(s) 387, 1095, 1119, 1196
SatI GCNGC 3 cut(s) 305, 737, 1286
Sau3AI GATC 6 cut(s) 79, 600, 956, 1361, 1462, 1478
Sau96I GGNCC 2 cut(s) 513, 594
ScaI AGTACT 1 cut(s) 1316
SchI GAGTC 3 cut(s) 10, 354, 1032
ScrFI CCNGG 4 cut(s) 104, 127, 657, 675
SduI GDGCHC 1 cut(s) 1344
SfaNI GCATC 4 cut(s) 891, 1209, 1312, 1560
SfcI CTRYAG 1 cut(s) 401
Sfr274I CTCGAG 1 cut(s) 491
SinI GGWCC 2 cut(s) 513, 594
SlaI CTCGAG 1 cut(s) 491
SmiMI CAYNNNNRTG 2 cut(s) 26, 32
SmlI CTYRAG 4 cut(s) 491, 905, 1250, 1517
SmoI CTYRAG 4 cut(s) 491, 905, 1250, 1517
SsiI CCGC 4 cut(s) 520, 543, 653, 1337
SspI AATATT 2 cut(s) 1123, 1182
SspMI CTAG 4 cut(s) 47, 180, 357, 1205
StyD4I CCNGG 4 cut(s) 102, 125, 655, 673
StyI CCWWGG 4 cut(s) 55, 849, 1304, 1546
TaaI ACNGT 3 cut(s) 206, 218, 405
TaiI ACGT 2 cut(s) 585, 692
TaqI TCGA 4 cut(s) 208, 492, 977, 1059
TatI WGTACW 3 cut(s) 777, 1314, 1443
TfiI GAWTC 3 cut(s) 339, 986, 1112
Tru1I TTAA 4 cut(s) 387, 1095, 1119, 1196
Tru9I TTAA 4 cut(s) 387, 1095, 1119, 1196
TscAI CASTG 5 cut(s) 149, 209, 712, 1465, 1505
TseFI GTSAC 1 cut(s) 1048
TseI GCWGC 3 cut(s) 304, 736, 1285
Tsp45I GTSAC 1 cut(s) 1048
TspDTI ATGAA 8 cut(s) 177, 409, 839, 873, 956, 1006, 1182, 1283
TspGWI ACGGA 1 cut(s) 1434
TspRI CASTG 5 cut(s) 149, 209, 712, 1465, 1505
Van91I CCANNNNNTGG 2 cut(s) 351, 1279
VpaK11BI GGWCC 2 cut(s) 513, 594
VspI ATTAAT 1 cut(s) 1119
XapI RAATTY 8 cut(s) 223, 415, 587, 646, 826, 1083, 1143, 1159
XbaI TCTAGA 1 cut(s) 356
XceI RCATGY 1 cut(s) 458
XhoI CTCGAG 1 cut(s) 491
XmiI GTMKAC 4 cut(s) 208, 237, 400, 1242
XmnI GAANNNNTTC 1 cut(s) 379
XspI CTAG 4 cut(s) 47, 180, 357, 1205
ZrmI AGTACT 1 cut(s) 1316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.