Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000569

Physical Location & Seq

Genomic Coordinates Reverse (-)

13799397 .. 13800946

Gene Structure 1550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G156400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGTGGAACAATTTTGTGGTTGCAGAAAAGACTTCACTGCGTATGCAGATGTGTGCTTCAAAAATTTCGGGGATAGAGTTTTGCATTGGACTACTATGAATGAACCTAATGTTTTTGTACTTGGGGGTTATGATGCTGGATTTCTTCCACCACAACGATGTTCAATTCCATTTGGTCTCAACTGCTCTAGGGGTAACTCCTCAACAGAACCATACTTGGCAACGCATAATATCTTGTTATCTCATGCGTCGGCTGCTAGATTGTACAAGAAAAACTACCAGGATAAACAACGTGGGTTTATAGGAATCAACCTTTTTGCCTTTTGGTTTTTTCCTCGAACAAAAACCATTGAAGATGAACTAGCAACCCAAAGAGGCTTCGACTTCTATTTTGGTTGGTATTTGAATCCCTTGGTGTTTGGAGATTACCCTGATGTAATGAAAAAAAATGCAGGCTCTAGAATTCCTTTCTTCACTAGGCTTGAGTCTCAAAGTGTCAAGGGTTCGTTTGACTTCATAGGATTTAATTATTATACCGCCGTATACGCCGAGGACAACTCCGTCAGCTTAGAGAGTACAAACAGAGACTATATTGCTGACTCGGCAATGAAGACGATATTTCAACGTCGATATTGTGCGGAAACACTCCAAGACCTTGTCATTGATGGACTATGCGATAACACACACACAAACTCTTTGAGAATAAAAAACACACACACCACAAAGAGAGTAAGCAAACACACAAGAATACAAAGATGTATAGAGGTTCAGCTTTGTACCTACATTCTCTTTGGTGACCCCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko00460 ko00500 ko00940 ko01100 ko01110 ko01120 map00230 map00460 map00500 map00940 map01100 map01110 map01120

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

269

Amino Acids

30.87

Weight (kDa)

8.31

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G60090 AT1G60090 AT1G60270 AT1G60270 AT4G22100 AT5G16580
fragaria_vesca	FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420
malus_domestica	MD11G1150300.v1.1 MD11G1150400.v1.1 MD11G1150500.v1.1 MD11G1150800.v1.1 MD11G1151000.v1.1 MD11G1151200.v1.1
prunus_persica	Prupe.6G156200_v2.0.a1 Prupe.6G156200_v2.0.a1 Prupe.6G156400_v2.0.a1 Prupe.6G156500_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1
pyrus_communis	pycom11g12280 pycom11g12290 pycom11g12310
rosa_chinensis	RchiOBHm_Chr5g0041221 RchiOBHm_Chr5g0041231 RchiOBHm_Chr5g0041251 RchiOBHm_Chr7g0234981
rosa_laevigata	RLG00000001188 RLG00000034038 RLG00000034040 RLG00000034043
rosa_multiflora	Rmu_co8273911.1_g000001 Rmu_sc0003502.1_g000015 Rmu_sc0005650.1_g000002 Rmu_sc0007703.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039370 Rroxscaffold_1G00039400 Rroxscaffold_3G00226380
rosa_rugosa	Rorug05G0190700 Rorug05G0190800 Rorug07G0286800
rosa_samantha	Rh3BG326300 Rh5AG276800 Rh5AG277000 Rh5BG281700 Rh5BG281800 Rh5CG285800 Rh5CG313900 Rh5CG314000 Rh5DG289900 Rh5DG290100 Rh5DG290300 Rh7AG441700 Rh7DG431300
rosa_wichuraiana	Rw5G026030 Rw5G026040 Rw7G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	560
AccI	GTMKAC	1 cut(s)	543
AciI	CCGC	2 cut(s)	537, 638
AcsI	RAATTY	2 cut(s)	64, 462
AfaI	GTAC	4 cut(s)	120, 266, 577, 778
AgsI	TTSAA	5 cut(s)	61, 165, 353, 406, 623
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	2 cut(s)	567, 772
AluI	AGCT	2 cut(s)	567, 772
Alw26I	GTCTC	3 cut(s)	182, 492, 579
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	2 cut(s)	64, 462
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AsuHPI	GGTGA	1 cut(s)	806
BbsI	GAAGAC	1 cut(s)	617
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	1 cut(s)	659
BceAI	ACGGC	1 cut(s)	524
BciT130I	CCWGG	1 cut(s)	281
BcoDI	GTCTC	3 cut(s)	182, 492, 579
BfaI	CTAG	6 cut(s)	189, 258, 362, 459, 477, 805
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	617
BplI	GAGNNNNNCTC	2 cut(s)	542, 574
BpuEI	CTTGAG	1 cut(s)	503
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	411, 549
Bse3DI	GCAATG	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	411, 549
BseMI	GCAATG	1 cut(s)	612
BseRI	GAGGAG	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	241
BsmAI	GTCTC	3 cut(s)	182, 492, 579
Bso31I	GGTCTC	1 cut(s)	182
Bsp1407I	TGTACA	1 cut(s)	264
BspACI	CCGC	2 cut(s)	537, 638
BspTNI	GGTCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	612
BsrGI	TGTACA	1 cut(s)	264
BssECI	CCNNGG	2 cut(s)	411, 549
BssNAI	GTATAC	1 cut(s)	544
BssT1I	CCWWGG	1 cut(s)	411
Bst1107I	GTATAC	1 cut(s)	544
Bst2UI	CCWGG	1 cut(s)	281
BstAUI	TGTACA	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	1 cut(s)	568
BstEII	GGTNACC	1 cut(s)	794
BstMAI	GTCTC	3 cut(s)	182, 492, 579
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 545, 602
BstNI	CCWGG	1 cut(s)	281
BstPI	GGTNACC	1 cut(s)	794
BstSCI	CCNGG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	617
BstZ17I	GTATAC	1 cut(s)	544
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	454
CseI	GACGC	1 cut(s)	237
Csp6I	GTAC	4 cut(s)	119, 265, 576, 777
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	6 cut(s)	254, 378, 456, 481, 567, 772
CviKI_1	RGCY	6 cut(s)	254, 378, 456, 481, 567, 772
CviQI	GTAC	4 cut(s)	119, 265, 576, 777
DdeI	CTNAG	1 cut(s)	568
DrdI	GACNNNNNNGTC	1 cut(s)	560
DseDI	GACNNNNNNGTC	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	182
Eco91I	GGTNACC	1 cut(s)	794
EcoO65I	GGTNACC	1 cut(s)	794
EcoRI	GAATTC	1 cut(s)	462
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	1 cut(s)	248
FatI	CATG	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	543
Fnu4HI	GCNGC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	6 cut(s)	189, 258, 362, 459, 477, 805
GluI	GCNGC	1 cut(s)	255
HgaI	GACGC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	248
HinfI	GANTC	4 cut(s)	306, 406, 485, 599
HphI	GGTGA	1 cut(s)	806
Hpy166II	GTNNAC	1 cut(s)	544
Hpy188III	TCNNGA	1 cut(s)	459
Hpy8I	GTNNAC	1 cut(s)	544
Hpy99I	CGWCG	2 cut(s)	253, 630
HpyCH4IV	ACGT	2 cut(s)	292, 625
HpyCH4V	TGCA	4 cut(s)	24, 47, 85, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 545, 602
HpyF3I	CTNAG	1 cut(s)	568
HpySE526I	ACGT	2 cut(s)	292, 625
Hsp92II	CATG	1 cut(s)	248
LpnPI	CCDG	5 cut(s)	123, 266, 293, 438, 444
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	6 cut(s)	189, 258, 362, 459, 477, 805
MaeII	ACGT	2 cut(s)	292, 625
MaeIII	GTNAC	2 cut(s)	194, 794
MboII	GAAGA	4 cut(s)	137, 365, 463, 622
MluCI	AATT	5 cut(s)	11, 64, 165, 462, 526
MlyI	GAGTC	2 cut(s)	494, 593
MnlI	CCTC	5 cut(s)	211, 345, 368, 544, 757
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	157
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	3 cut(s)	254, 545, 602
NlaIII	CATG	1 cut(s)	248
NmeAIII	GCCGAG	2 cut(s)	574, 581
NmuCI	GTSAC	1 cut(s)	794
PfeI	GAWTC	2 cut(s)	306, 406
PflFI	GACNNNGTC	1 cut(s)	656
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	2 cut(s)	493, 593
PpsI	GAGTC	2 cut(s)	493, 593
Psp6I	CCWGG	1 cut(s)	279
PspEI	GGTNACC	1 cut(s)	794
PspGI	CCWGG	1 cut(s)	279
PsyI	GACNNNGTC	1 cut(s)	656
RsaI	GTAC	4 cut(s)	120, 266, 577, 778
RsaNI	GTAC	4 cut(s)	119, 265, 576, 777
RseI	CAYNNNNRTG	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	1 cut(s)	255
SchI	GAGTC	2 cut(s)	494, 593
ScrFI	CCNGG	1 cut(s)	281
SetI	ASST	9 cut(s)	109, 295, 315, 569, 628, 657, 768, 774, 782
SfaNI	GCATC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	5 cut(s)	11, 64, 165, 462, 526
SsiI	CCGC	2 cut(s)	537, 638
SspMI	CTAG	6 cut(s)	189, 258, 362, 459, 477, 805
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	411
TaiI	ACGT	2 cut(s)	295, 628
TaqI	TCGA	3 cut(s)	337, 381, 628
TasI	AATT	5 cut(s)	11, 64, 165, 462, 526
TatI	WGTACW	3 cut(s)	118, 264, 575
TfiI	GAWTC	2 cut(s)	306, 406
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	794
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	794
TspDTI	ATGAA	6 cut(s)	113, 117, 372, 455, 505, 623
TspGWI	ACGGA	1 cut(s)	550
TspRI	CASTG	1 cut(s)	43
Tth111I	GACNNNGTC	1 cut(s)	656
XapI	RAATTY	2 cut(s)	64, 462
XbaI	TCTAGA	1 cut(s)	458
XmiI	GTMKAC	1 cut(s)	543
XspI	CTAG	6 cut(s)	189, 258, 362, 459, 477, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.