Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000569

Physical Location & Seq

Genomic Coordinates Reverse (-)

22221575 .. 22224358

Gene Structure 2784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGAAAAGACTTTTGCTCTGATTACCATTTTTCTTGCTTTTGCTTTCTCCGGGAAATGCAGCGACGTTTTCAGCAGATGTGATTTTCCTGAGGGATTCGTCTTTGGATCTTCCACTTCTGCTTATCAGTGGGAAGGAGCTGTTGCGGAAGACGGAAGGAAACCTAGTGTCTGGGACAGATTTTGTCACTCACATAATAACCAAGGTAACGGAGATATAACATGTGATGGGTATCACAAATACAAGGAAGATGTGAAGTTGATGGTGGACACTAACTTAGATGCTTTCAGATTCTCCATCTCTTGGTCTAGGCTAATACCTAATAGAAGAGGCCCTGTTAACCAAAAGGGTCTTCAGTTCTACAAGAATCTTATCCAAGAATTAGTAAACCATGGAATTGAACCATATGTTACACTGCACCACTTTGATCATCCTCAATATCTTGAGGACGAATATGAAGGATGGCTCAACCACATGATCGTCGAAGACTTTACTGCTTATGCAGATGTTTGCTTCAGAGAGTTTGGAAACCATGTCAAATTCTGGACCACGATCAACGAGGGCAATATATTCTCTATTGGAGGTTACAACGATGGGGATTCACCGCCTGGTCGTTGTTCCATACCAGGCCAAAACTGCTTATTAGGGAACTCTTCCACTGAACCATATATTGTAGGCCATAATTTGTTGCTTGCGCACGCCTCTGTTTCAAGACTATATAAGCAAAATTACAAGGATAAGCAGGGAGGTTCCATAGGCTTTAGCATATTGACGATAGGGTTTAGTCCTTCCACAAGCTCCAAAGATGATGCCATTGCAACTCAAAGAGCCAACGATTTCTTCAACGGCTGGATGCTTGGGCCTCTTATATATGGAGACTATCCGGATACAATGAAAAGAATCGTCGGATCAAGAATGCCCGTTTTCTCGGAGGAAGAATCAGAACAAGTGAAAGGCTCATCTGACTATATAGGAATCAATCACTATCTTGCAGCTTCTATCACAAACAGCAAACTGAAACCTTCTATTTCAGGAAACCCTGATTTCTACTCAGACATGAACGTAATTTTGAGTTTCTTTGCGAATTTTTCATCTTCTGAGTATGATGTTGCTCCATGGGCTATAGAAGCTGTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0008150 GO:0008152 GO:0008422 GO:0009628 GO:0009812 GO:0015926 GO:0016787 GO:0016798 GO:0042440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046283 GO:0050896 GO:0071704 GO:0080167 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko00460 ko00500 ko00940 ko01100 ko01110 ko01120 map00230 map00460 map00500 map00940 map01100 map01110 map01120

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

379

Amino Acids

42.59

Weight (kDa)

5.2

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	28 - 375	2.8e-100	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G60090 AT1G60090 AT1G60270 AT1G60270 AT4G22100 AT5G16580
fragaria_vesca	FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420
malus_domestica	MD11G1150300.v1.1 MD11G1150400.v1.1 MD11G1150500.v1.1 MD11G1150800.v1.1 MD11G1151000.v1.1 MD11G1151200.v1.1
prunus_persica	Prupe.6G156200_v2.0.a1 Prupe.6G156200_v2.0.a1 Prupe.6G156400_v2.0.a1 Prupe.6G156500_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1
pyrus_communis	pycom11g12280 pycom11g12290 pycom11g12310
rosa_chinensis	RchiOBHm_Chr5g0041221 RchiOBHm_Chr5g0041231 RchiOBHm_Chr5g0041251 RchiOBHm_Chr7g0234981
rosa_laevigata	RLG00000001188 RLG00000034038 RLG00000034040 RLG00000034043
rosa_multiflora	Rmu_co8273911.1_g000001 Rmu_sc0003502.1_g000015 Rmu_sc0005650.1_g000002 Rmu_sc0007703.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039370 Rroxscaffold_1G00039400 Rroxscaffold_3G00226380
rosa_rugosa	Rorug05G0190700 Rorug05G0190800 Rorug07G0286800
rosa_samantha	Rh3BG326300 Rh5AG276800 Rh5AG277000 Rh5BG281700 Rh5BG281800 Rh5CG285800 Rh5CG313900 Rh5CG314000 Rh5DG289900 Rh5DG290100 Rh5DG290300 Rh7AG441700 Rh7DG431300
rosa_wichuraiana	Rw5G026030 Rw5G026040 Rw7G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	696
AccB7I	CCANNNNNTGG	1 cut(s)	303
AccIII	TCCGGA	1 cut(s)	883
AciI	CCGC	2 cut(s)	146, 605
AclWI	GGATC	2 cut(s)	115, 916
AcsI	RAATTY	2 cut(s)	539, 1084
AcuI	CTGAAG	2 cut(s)	338, 499
AfiI	CCNNNNNNNGG	1 cut(s)	303
AflIII	ACRYGT	1 cut(s)	221
AgsI	TTSAA	3 cut(s)	401, 711, 844
AjnI	CCWGG	2 cut(s)	607, 625
AjuI	GAANNNNNNNTTGG	4 cut(s)	336, 368, 824, 856
AluBI	AGCT	4 cut(s)	140, 798, 995, 1130
AluI	AGCT	4 cut(s)	140, 798, 995, 1130
Alw26I	GTCTC	1 cut(s)	870
AlwI	GGATC	2 cut(s)	115, 916
Aor13HI	TCCGGA	1 cut(s)	883
AoxI	GGCC	4 cut(s)	331, 628, 676, 860
ApeKI	GCWGC	2 cut(s)	60, 992
ApoI	RAATTY	2 cut(s)	539, 1084
AspLEI	GCGC	1 cut(s)	697
AspS9I	GGNCC	3 cut(s)	332, 546, 860
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	594
AvaII	GGWCC	1 cut(s)	546
AxyI	CCTNAGG	1 cut(s)	90
BbsI	GAAGAC	3 cut(s)	156, 344, 492
BbvI	GCAGC	2 cut(s)	72, 1004
BccI	CCATC	5 cut(s)	221, 256, 305, 456, 587
BceAI	ACGGC	1 cut(s)	862
BciT130I	CCWGG	2 cut(s)	609, 627
BciVI	GTATCC	1 cut(s)	880
BclI	TGATCA	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	870
BfaI	CTAG	2 cut(s)	165, 309
BfmI	CTRYAG	1 cut(s)	1122
BfuI	GTATCC	1 cut(s)	880
BisI	GCNGC	2 cut(s)	61, 993
BlsI	GCNGC	2 cut(s)	62, 994
Bme1390I	CCNGG	3 cut(s)	52, 609, 627
Bme18I	GGWCC	1 cut(s)	546
BmgT120I	GGNCC	3 cut(s)	332, 546, 860
BmiI	GGNNCC	1 cut(s)	751
BmrFI	CCNGG	3 cut(s)	52, 609, 627
BmsI	GCATC	3 cut(s)	271, 799, 843
BpiI	GAAGAC	3 cut(s)	156, 344, 492
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	52
BsaBI	GATNNNNATC	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	202, 391, 1115
BsaWI	WCCGGW	1 cut(s)	883
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse21I	CCTNAGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	813
Bse8I	GATNNNNATC	1 cut(s)	231
BseAI	TCCGGA	1 cut(s)	883
BseBI	CCWGG	2 cut(s)	609, 627
BseDI	CCNNGG	3 cut(s)	202, 391, 1115
BseGI	GGATG	3 cut(s)	430, 467, 858
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	3 cut(s)	81, 1065, 1089
BseXI	GCAGC	2 cut(s)	72, 1004
BsgI	GTGCAG	1 cut(s)	401
BshFI	GGCC	4 cut(s)	333, 630, 678, 862
BsiSI	CCGG	2 cut(s)	51, 884
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	870
BsmFI	GGGAC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	921
BsnI	GGCC	4 cut(s)	333, 630, 678, 862
Bsp13I	TCCGGA	1 cut(s)	883
Bsp143I	GATC	5 cut(s)	107, 427, 477, 552, 908
Bsp19I	CCATGG	2 cut(s)	391, 1115
BspACI	CCGC	2 cut(s)	146, 605
BspANI	GGCC	4 cut(s)	333, 630, 678, 862
BspCNI	CTCAG	3 cut(s)	82, 1064, 1090
BspEI	TCCGGA	1 cut(s)	883
BspLI	GGNNCC	1 cut(s)	751
BspPI	GGATC	2 cut(s)	115, 916
BsrDI	GCAATG	1 cut(s)	813
BssECI	CCNNGG	3 cut(s)	202, 391, 1115
BssMI	GATC	5 cut(s)	107, 427, 477, 552, 908
BssT1I	CCWWGG	3 cut(s)	202, 391, 1115
Bst2UI	CCWGG	2 cut(s)	609, 627
Bst6I	CTCTTC	2 cut(s)	322, 658
BstC8I	GCNNGC	2 cut(s)	693, 699
BstDEI	CTNAG	4 cut(s)	90, 277, 1051, 1098
BstDSI	CCRYGG	2 cut(s)	391, 1115
BstF5I	GGATG	3 cut(s)	430, 467, 858
BstHHI	GCGC	1 cut(s)	697
BstKTI	GATC	5 cut(s)	110, 430, 480, 555, 911
BstMAI	GTCTC	1 cut(s)	870
BstMBI	GATC	5 cut(s)	107, 427, 477, 552, 908
BstMWI	GCNNNNNNNGC	3 cut(s)	636, 1118, 1127
BstNI	CCWGG	2 cut(s)	609, 627
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	3 cut(s)	50, 607, 625
BstSFI	CTRYAG	1 cut(s)	1122
BstV1I	GCAGC	2 cut(s)	72, 1004
BstV2I	GAAGAC	3 cut(s)	156, 344, 492
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
Bsu36I	CCTNAGG	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	880
BsuRI	GGCC	4 cut(s)	333, 630, 678, 862
BtgI	CCRYGG	2 cut(s)	391, 1115
BtsCI	GGATG	3 cut(s)	430, 467, 858
BtsI	GCAGTG	1 cut(s)	413
BtsIMutI	CAGTG	3 cut(s)	134, 413, 657
Cac8I	GCNNGC	2 cut(s)	693, 699
CfoI	GCGC	1 cut(s)	697
Cfr13I	GGNCC	3 cut(s)	332, 546, 860
CviAII	CATG	6 cut(s)	222, 392, 475, 533, 1057, 1116
DdeI	CTNAG	4 cut(s)	90, 277, 1051, 1098
DpnI	GATC	5 cut(s)	109, 429, 479, 554, 910
DpnII	GATC	5 cut(s)	107, 427, 477, 552, 908
Eam1104I	CTCTTC	2 cut(s)	322, 658
EarI	CTCTTC	2 cut(s)	322, 658
Eco130I	CCWWGG	3 cut(s)	202, 391, 1115
Eco47I	GGWCC	1 cut(s)	546
Eco57I	CTGAAG	2 cut(s)	338, 499
Eco81I	CCTNAGG	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	2 cut(s)	607, 625
EcoT14I	CCWWGG	3 cut(s)	202, 391, 1115
ErhI	CCWWGG	3 cut(s)	202, 391, 1115
FaeI	CATG	6 cut(s)	225, 395, 478, 536, 1060, 1119
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	6 cut(s)	221, 391, 474, 532, 1056, 1115
FauNDI	CATATG	1 cut(s)	406
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	2 cut(s)	61, 993
FokI	GGATG	3 cut(s)	417, 474, 865
Fsp4HI	GCNGC	2 cut(s)	61, 993
FspBI	CTAG	2 cut(s)	165, 309
FspI	TGCGCA	1 cut(s)	696
GlaI	GCGC	1 cut(s)	696
GluI	GCNGC	2 cut(s)	61, 993
HaeIII	GGCC	4 cut(s)	333, 630, 678, 862
HapII	CCGG	2 cut(s)	51, 884
HhaI	GCGC	1 cut(s)	697
Hin1II	CATG	6 cut(s)	225, 395, 478, 536, 1060, 1119
Hin6I	GCGC	1 cut(s)	695
HinP1I	GCGC	1 cut(s)	695
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	7 cut(s)	96, 291, 367, 599, 900, 938, 975
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	2 cut(s)	51, 884
HphI	GGTGA	1 cut(s)	594
Hpy166II	GTNNAC	3 cut(s)	268, 340, 388
Hpy188I	TCNGA	9 cut(s)	21, 290, 518, 908, 931, 943, 964, 1054, 1099
Hpy188III	TCNNGA	7 cut(s)	89, 443, 544, 711, 884, 912, 1032
Hpy8I	GTNNAC	3 cut(s)	268, 340, 388
Hpy99I	CGWCG	3 cut(s)	68, 485, 908
HpyAV	CCTTC	5 cut(s)	128, 150, 452, 798, 1032
HpyCH4IV	ACGT	2 cut(s)	66, 1062
HpyCH4V	TGCA	5 cut(s)	60, 418, 503, 818, 992
HpyF10VI	GCNNNNNNNGC	3 cut(s)	636, 1118, 1127
HpyF3I	CTNAG	4 cut(s)	90, 277, 1051, 1098
HpySE526I	ACGT	2 cut(s)	66, 1062
Hsp92II	CATG	6 cut(s)	225, 395, 478, 536, 1060, 1119
HspAI	GCGC	1 cut(s)	695
Kpn2I	TCCGGA	1 cut(s)	883
Ksp22I	TGATCA	1 cut(s)	427
KspAI	GTTAAC	1 cut(s)	340
Kzo9I	GATC	5 cut(s)	107, 427, 477, 552, 908
LmnI	GCTCC	3 cut(s)	137, 803, 1117
Lsp1109I	GCAGC	2 cut(s)	72, 1004
LweI	GCATC	3 cut(s)	271, 799, 843
MaeI	CTAG	2 cut(s)	165, 309
MaeII	ACGT	2 cut(s)	66, 1062
MaeIII	GTNAC	4 cut(s)	185, 206, 409, 584
MalI	GATC	5 cut(s)	109, 429, 479, 554, 910
MboI	GATC	5 cut(s)	107, 427, 477, 552, 908
MflI	RGATCY	1 cut(s)	107
MluCI	AATT	7 cut(s)	380, 396, 539, 682, 727, 1065, 1084
MmeI	TCCRAC	1 cut(s)	886
MroI	TCCGGA	1 cut(s)	883
MseI	TTAA	1 cut(s)	339
MspI	CCGG	2 cut(s)	51, 884
MspR9I	CCNGG	3 cut(s)	52, 609, 627
Mva1269I	GAATGC	1 cut(s)	921
MvaI	CCWGG	2 cut(s)	609, 627
MwoI	GCNNNNNNNGC	3 cut(s)	636, 1118, 1127
NciI	CCSGG	1 cut(s)	52
NcoI	CCATGG	2 cut(s)	391, 1115
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	5 cut(s)	107, 427, 477, 552, 908
NlaIII	CATG	6 cut(s)	225, 395, 478, 536, 1060, 1119
NlaIV	GGNNCC	1 cut(s)	751
NmuCI	GTSAC	1 cut(s)	185
NsbI	TGCGCA	1 cut(s)	696
NspI	RCATGY	1 cut(s)	225
PciI	ACATGT	1 cut(s)	221
PctI	GAATGC	1 cut(s)	921
PfeI	GAWTC	7 cut(s)	96, 291, 367, 599, 900, 938, 975
PflMI	CCANNNNNTGG	1 cut(s)	303
PfoI	TCCNGGA	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	62, 994
PscI	ACATGT	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	607, 625
PspGI	CCWGG	2 cut(s)	607, 625
PspN4I	GGNNCC	1 cut(s)	751
PspPI	GGNCC	3 cut(s)	332, 546, 860
PsuI	RGATCY	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	61, 993
Sau3AI	GATC	5 cut(s)	107, 427, 477, 552, 908
Sau96I	GGNCC	3 cut(s)	332, 546, 860
ScrFI	CCNGG	3 cut(s)	52, 609, 627
SfaNI	GCATC	3 cut(s)	271, 799, 843
SfcI	CTRYAG	1 cut(s)	1122
SinI	GGWCC	1 cut(s)	546
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	7 cut(s)	380, 396, 539, 682, 727, 1065, 1084
SsiI	CCGC	2 cut(s)	146, 605
SspMI	CTAG	2 cut(s)	165, 309
StyD4I	CCNGG	3 cut(s)	50, 607, 625
StyI	CCWWGG	3 cut(s)	202, 391, 1115
TaiI	ACGT	2 cut(s)	69, 1065
TaqI	TCGA	1 cut(s)	483
TasI	AATT	7 cut(s)	380, 396, 539, 682, 727, 1065, 1084
TfiI	GAWTC	7 cut(s)	96, 291, 367, 599, 900, 938, 975
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	3 cut(s)	134, 420, 664
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	2 cut(s)	60, 992
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	4 cut(s)	471, 908, 1073, 1080
TspGWI	ACGGA	2 cut(s)	168, 225
TspRI	CASTG	3 cut(s)	134, 420, 664
Van91I	CCANNNNNTGG	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	546
XapI	RAATTY	2 cut(s)	539, 1084
XceI	RCATGY	1 cut(s)	225
XspI	CTAG	2 cut(s)	165, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.