Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000569

Physical Location & Seq

Genomic Coordinates Reverse (-)

13810777 .. 13819705

Gene Structure 8929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G156500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGTTGAAAGTTTCACTACTGCTGTGTTTTCTTCTCATAAAATTTTCTTCAGGCACAGACAACTTTACCAGAGATGACTTCCCACCGGGCTTTGTTTTTGGTGCTTCCTCCTCTGCTTATCAGGTGGAAGGTGCTGCAGACGAAGATGGGAGGACCCCAAGCATCTTGGACACATTTGCTCATGCCGGGAATTTTGATGGAGCCACTGGAGATGTAGCGTGTGATGAGTATCACAAATACAAGGAAGATGTCAAACTAATGGCGGATACGGGTTTAGAGGCGTATAGATTTTCAATCTCATGGTCAAGACTTATCCCAAATGGAAAAGGACCTGTGAATCCGAAGGGTGTACAATATTATAACAATCTTATTGATGAACTAATCAGCAATGCGGGAATTCAGCCGCATGTTACTTTACACCACAGTGATCTCCCACAAGCACTTGAAGACGAGTATGGAGGATGGGTTGGTCGAGAGATTGTAAAAGACTTCACAGCATATGCAGATGTATGCTTCAAAACTTTTGGCGACAGAGTTCTGTATTGGACTACCATGAATGAACCTAATGTTTTTTCACTTGGGGGTTATGATATTGGATTTCTTCCGCCACAACGGTGTTCAGCTCCATTTGGTGTGAATTGTTCTAGGGGTAACTCCTCAGTAGAGCCATACATTGCAGTTCATCATCTATTGCTATCTCATGCATCGGCAGCTAGATTGTACAAGAAAAAGTACCAGGACAAGCAACATGGATTTGTAGGAATCAATGTATTTGCCTATTGGTTTGTTCCTCTAACAAAAACCATTGAAGATGAACTTGCGGCCCAAAGAGCCCTCGACTTTGATTCTGGTTGGATTTTGAATCCCTTGGTGTTTGGAGATTACCCTGATGTAATGAAAAAGAACGCAGGCTCTAGACTTCCTGCCTTTACTAGTTTGGAGTCCGAAAGTGTGAAGGGTTCATGTGACTTCCTGGGAATTAATTATTATAACACATTATACGCCAAGGACTACTCTAGCGTCTTAAAGAAGGAAAAGAGAGACTTTATTGCAGACTCGGGAATAAAGATTATGAGTCTACAAAATGATACAACATTTGAGTTTCCGGTAACTCCCTGGGGCCTGCAACAAGTGCTGGAATATGTCAAGCAAAACTATGGAAATCCTCCAATATATATCCAAGAAAATGGTCAACGAACTCGACGCAATTCATCATTAGAGGATTGGCCAAGGGTGAAATATTTGGACGGACACATCCAAAATTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko00460 ko00500 ko00940 ko01100 ko01110 ko01120 map00230 map00460 map00500 map00940 map01100 map01110 map01120

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

424

Amino Acids

47.52

Weight (kDa)

5.42

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G02850 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G45191 AT1G60090 AT1G60090 AT1G60270 AT1G60270 AT4G22100 AT5G16580
fragaria_vesca	FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420 FvH4_3g23420
malus_domestica	MD11G1150300.v1.1 MD11G1150400.v1.1 MD11G1150500.v1.1 MD11G1150800.v1.1 MD11G1151000.v1.1 MD11G1151200.v1.1
prunus_persica	Prupe.6G156200_v2.0.a1 Prupe.6G156200_v2.0.a1 Prupe.6G156400_v2.0.a1 Prupe.6G156500_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1 Prupe.6G156600_v2.0.a1
pyrus_communis	pycom11g12280 pycom11g12290 pycom11g12310
rosa_chinensis	RchiOBHm_Chr5g0041221 RchiOBHm_Chr5g0041231 RchiOBHm_Chr5g0041251 RchiOBHm_Chr7g0234981
rosa_laevigata	RLG00000001188 RLG00000034038 RLG00000034040 RLG00000034043
rosa_multiflora	Rmu_co8273911.1_g000001 Rmu_sc0003502.1_g000015 Rmu_sc0005650.1_g000002 Rmu_sc0007703.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039370 Rroxscaffold_1G00039400 Rroxscaffold_3G00226380
rosa_rugosa	Rorug05G0190700 Rorug05G0190800 Rorug07G0286800
rosa_samantha	Rh3BG326300 Rh5AG276800 Rh5AG277000 Rh5BG281700 Rh5BG281800 Rh5CG285800 Rh5CG313900 Rh5CG314000 Rh5DG289900 Rh5DG290100 Rh5DG290300 Rh7AG441700 Rh7DG431300
rosa_wichuraiana	Rw5G026030 Rw5G026040 Rw7G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	360, 990
AccI	GTMKAC	1 cut(s)	1078
AciI	CCGC	5 cut(s)	263, 392, 404, 605, 821
AcoI	YGGCCR	1 cut(s)	1226
AcsI	RAATTY	4 cut(s)	41, 190, 396, 1261
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	3 cut(s)	351, 722, 734
AgsI	TTSAA	6 cut(s)	7, 294, 446, 517, 809, 862
AhlI	ACTAGT	1 cut(s)	932
AjnI	CCWGG	3 cut(s)	735, 972, 1115
AleI	CACNNNNGTG	2 cut(s)	423, 613
AluBI	AGCT	2 cut(s)	623, 713
AluI	AGCT	2 cut(s)	623, 713
Alw26I	GTCTC	1 cut(s)	1035
Ama87I	CYCGRG	1 cut(s)	1057
AoxI	GGCC	3 cut(s)	822, 1120, 1226
ApeKI	GCWGC	2 cut(s)	134, 710
ApoI	RAATTY	4 cut(s)	41, 190, 396, 1261
AseI	ATTAAT	1 cut(s)	981
AspS9I	GGNCC	4 cut(s)	153, 329, 823, 1120
AsuC2I	CCSGG	2 cut(s)	87, 187
AsuHPI	GGTGA	1 cut(s)	1246
AvaI	CYCGRG	1 cut(s)	1057
AvaII	GGWCC	2 cut(s)	153, 329
BalI	TGGCCA	1 cut(s)	1228
BanII	GRGCYC	1 cut(s)	835
BbsI	GAAGAC	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	121, 722
BccI	CCATC	3 cut(s)	140, 191, 456
BciT130I	CCWGG	3 cut(s)	737, 974, 1117
BciVI	GTATCC	1 cut(s)	259
BcnI	CCSGG	2 cut(s)	87, 187
BcoDI	GTCTC	1 cut(s)	1035
BcuI	ACTAGT	1 cut(s)	932
BfaI	CTAG	5 cut(s)	645, 714, 915, 933, 1017
BfmI	CTRYAG	1 cut(s)	135
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	4 cut(s)	135, 404, 711, 822
BlsI	GCNGC	4 cut(s)	136, 405, 712, 823
Bme1390I	CCNGG	5 cut(s)	87, 187, 737, 974, 1117
Bme18I	GGWCC	2 cut(s)	153, 329
BmeT110I	CYCGRG	1 cut(s)	1057
BmgT120I	GGNCC	4 cut(s)	153, 329, 823, 1120
BmiI	GGNNCC	3 cut(s)	155, 202, 1121
BmrFI	CCNGG	5 cut(s)	87, 187, 737, 974, 1117
BmsI	GCATC	2 cut(s)	171, 713
BpiI	GAAGAC	1 cut(s)	453
BpmI	CTGGAG	1 cut(s)	228
BpuMI	CCSGG	2 cut(s)	87, 187
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	6 cut(s)	867, 973, 1005, 1115, 1116, 1229
BsaWI	WCCGGW	1 cut(s)	1105
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	2 cut(s)	394, 672
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	3 cut(s)	737, 974, 1117
BseDI	CCNNGG	6 cut(s)	867, 973, 1005, 1115, 1116, 1229
BseGI	GGATG	2 cut(s)	467, 1254
BseJI	GATNNNNATC	1 cut(s)	228
BseMI	GCAATG	2 cut(s)	394, 672
BseMII	CTCAG	1 cut(s)	672
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	2 cut(s)	100, 646
BseXI	GCAGC	2 cut(s)	121, 722
BshFI	GGCC	3 cut(s)	824, 1122, 1228
BsiHKCI	CYCGRG	1 cut(s)	1057
BsiSI	CCGG	3 cut(s)	86, 186, 1106
BsmAI	GTCTC	1 cut(s)	1035
BsnI	GGCC	3 cut(s)	824, 1122, 1228
BsoBI	CYCGRG	1 cut(s)	1057
Bsp1286I	GDGCHC	1 cut(s)	835
Bsp1407I	TGTACA	2 cut(s)	349, 720
Bsp143I	GATC	1 cut(s)	427
BspACI	CCGC	5 cut(s)	263, 392, 404, 605, 821
BspANI	GGCC	3 cut(s)	824, 1122, 1228
BspCNI	CTCAG	1 cut(s)	671
BspLI	GGNNCC	3 cut(s)	155, 202, 1121
BspMAI	CTGCAG	1 cut(s)	139
BsrDI	GCAATG	2 cut(s)	394, 672
BsrGI	TGTACA	2 cut(s)	349, 720
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	6 cut(s)	867, 973, 1005, 1115, 1116, 1229
BssMI	GATC	1 cut(s)	427
BssT1I	CCWWGG	3 cut(s)	867, 1005, 1229
Bst2UI	CCWGG	3 cut(s)	737, 974, 1117
Bst4CI	ACNGT	2 cut(s)	425, 615
BstAPI	GCANNNNNTGC	1 cut(s)	1132
BstAUI	TGTACA	2 cut(s)	349, 720
BstC8I	GCNNGC	2 cut(s)	910, 1124
BstDEI	CTNAG	1 cut(s)	658
BstF5I	GGATG	2 cut(s)	467, 1254
BstKTI	GATC	1 cut(s)	430
BstMAI	GTCTC	1 cut(s)	1035
BstMBI	GATC	1 cut(s)	427
BstMWI	GCNNNNNNNGC	3 cut(s)	710, 830, 1132
BstNI	CCWGG	3 cut(s)	737, 974, 1117
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	5 cut(s)	85, 185, 735, 972, 1115
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	121, 722
BstV2I	GAAGAC	1 cut(s)	453
BstXI	CCANNNNNNTGG	1 cut(s)	1187
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	824, 1122, 1228
BtsCI	GGATG	2 cut(s)	467, 1254
BtsIMutI	CAGTG	2 cut(s)	204, 430
Cac8I	GCNNGC	2 cut(s)	910, 1124
Cfr13I	GGNCC	4 cut(s)	153, 329, 823, 1120
CseI	GACGC	2 cut(s)	1009, 1212
Csp6I	GTAC	3 cut(s)	350, 721, 733
CviAII	CATG	7 cut(s)	182, 300, 407, 553, 701, 749, 963
CviQI	GTAC	3 cut(s)	350, 721, 733
DdeI	CTNAG	1 cut(s)	658
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	1226
EciI	GGCGGA	2 cut(s)	278, 594
Eco130I	CCWWGG	3 cut(s)	867, 1005, 1229
Eco24I	GRGCYC	1 cut(s)	835
Eco47I	GGWCC	2 cut(s)	153, 329
Eco57I	CTGAAG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	1057
EcoO109I	RGGNCCY	3 cut(s)	153, 329, 1120
EcoRI	GAATTC	1 cut(s)	396
EcoRII	CCWGG	3 cut(s)	735, 972, 1115
EcoT14I	CCWWGG	3 cut(s)	867, 1005, 1229
EcoT22I	ATGCAT	1 cut(s)	706
EcoT38I	GRGCYC	1 cut(s)	835
ErhI	CCWWGG	3 cut(s)	867, 1005, 1229
FaeI	CATG	7 cut(s)	185, 303, 410, 556, 704, 752, 966
FalI	AAGNNNNNCTT	4 cut(s)	801, 833, 1028, 1060
FatI	CATG	7 cut(s)	181, 299, 406, 552, 700, 748, 962
FauI	CCCGC	1 cut(s)	385
FauNDI	CATATG	1 cut(s)	499
FblI	GTMKAC	1 cut(s)	1078
Fnu4HI	GCNGC	4 cut(s)	135, 404, 711, 822
FokI	GGATG	2 cut(s)	474, 1241
FriOI	GRGCYC	1 cut(s)	835
Fsp4HI	GCNGC	4 cut(s)	135, 404, 711, 822
FspBI	CTAG	5 cut(s)	645, 714, 915, 933, 1017
GluI	GCNGC	4 cut(s)	135, 404, 711, 822
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	3 cut(s)	824, 1122, 1228
HapII	CCGG	3 cut(s)	86, 186, 1106
HgaI	GACGC	2 cut(s)	1009, 1212
Hin1II	CATG	7 cut(s)	185, 303, 410, 556, 704, 752, 966
HincII	GTYRAC	1 cut(s)	1193
HindII	GTYRAC	1 cut(s)	1193
HinfI	GANTC	7 cut(s)	337, 762, 845, 862, 941, 1055, 1075
HpaII	CCGG	3 cut(s)	86, 186, 1106
HphI	GGTGA	1 cut(s)	1246
Hpy166II	GTNNAC	3 cut(s)	350, 1079, 1193
Hpy188I	TCNGA	2 cut(s)	342, 946
Hpy188III	TCNNGA	4 cut(s)	306, 473, 915, 1059
Hpy8I	GTNNAC	3 cut(s)	350, 1079, 1193
Hpy99I	CGWCG	1 cut(s)	1206
HpyAV	CCTTC	4 cut(s)	122, 337, 949, 1024
HpyCH4III	ACNGT	2 cut(s)	425, 615
HpyCH4V	TGCA	6 cut(s)	137, 503, 677, 704, 1052, 1126
HpyF10VI	GCNNNNNNNGC	3 cut(s)	710, 830, 1132
HpyF3I	CTNAG	1 cut(s)	658
Hsp92II	CATG	7 cut(s)	185, 303, 410, 556, 704, 752, 966
Kzo9I	GATC	1 cut(s)	427
LmnI	GCTCC	2 cut(s)	200, 628
Lsp1109I	GCAGC	2 cut(s)	121, 722
LweI	GCATC	2 cut(s)	171, 713
MaeI	CTAG	5 cut(s)	645, 714, 915, 933, 1017
MaeIII	GTNAC	4 cut(s)	409, 650, 965, 1108
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	7 cut(s)	23, 39, 155, 257, 458, 593, 821
MhlI	GDGCHC	1 cut(s)	835
MlsI	TGGCCA	1 cut(s)	1228
MluCI	AATT	8 cut(s)	41, 190, 396, 637, 978, 982, 1207, 1261
MluNI	TGGCCA	1 cut(s)	1228
MlyI	GAGTC	3 cut(s)	950, 1049, 1084
MmeI	TCCRAC	1 cut(s)	833
Mox20I	TGGCCA	1 cut(s)	1228
Mph1103I	ATGCAT	1 cut(s)	706
MscI	TGGCCA	1 cut(s)	1228
MseI	TTAA	2 cut(s)	981, 1025
MslI	CAYNNNNRTG	2 cut(s)	423, 613
Msp20I	TGGCCA	1 cut(s)	1228
MspI	CCGG	3 cut(s)	86, 186, 1106
MspR9I	CCNGG	5 cut(s)	87, 187, 737, 974, 1117
MvaI	CCWGG	3 cut(s)	737, 974, 1117
MwoI	GCNNNNNNNGC	3 cut(s)	710, 830, 1132
NciI	CCSGG	2 cut(s)	87, 187
NdeI	CATATG	1 cut(s)	499
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	7 cut(s)	185, 303, 410, 556, 704, 752, 966
NlaIV	GGNNCC	3 cut(s)	155, 202, 1121
NmuCI	GTSAC	1 cut(s)	965
NsiI	ATGCAT	1 cut(s)	706
NspI	RCATGY	1 cut(s)	410
OliI	CACNNNNGTG	2 cut(s)	423, 613
PasI	CCCWGGG	1 cut(s)	1116
PfeI	GAWTC	4 cut(s)	337, 762, 845, 862
PkrI	GCNGC	4 cut(s)	136, 405, 712, 823
PleI	GAGTC	3 cut(s)	949, 1049, 1083
PpsI	GAGTC	3 cut(s)	949, 1049, 1083
PpuMI	RGGWCCY	2 cut(s)	153, 329
PshBI	ATTAAT	1 cut(s)	981
PsiI	TTATAA	2 cut(s)	360, 990
Psp5II	RGGWCCY	2 cut(s)	153, 329
Psp6I	CCWGG	3 cut(s)	735, 972, 1115
PspGI	CCWGG	3 cut(s)	735, 972, 1115
PspN4I	GGNNCC	3 cut(s)	155, 202, 1121
PspPI	GGNCC	4 cut(s)	153, 329, 823, 1120
PspPPI	RGGWCCY	2 cut(s)	153, 329
PstI	CTGCAG	1 cut(s)	139
RsaI	GTAC	3 cut(s)	351, 722, 734
RsaNI	GTAC	3 cut(s)	350, 721, 733
RseI	CAYNNNNRTG	2 cut(s)	423, 613
SaqAI	TTAA	2 cut(s)	981, 1025
SatI	GCNGC	4 cut(s)	135, 404, 711, 822
Sau3AI	GATC	1 cut(s)	427
Sau96I	GGNCC	4 cut(s)	153, 329, 823, 1120
SchI	GAGTC	3 cut(s)	950, 1049, 1084
ScrFI	CCNGG	5 cut(s)	87, 187, 737, 974, 1117
SduI	GDGCHC	1 cut(s)	835
SetI	ASST	6 cut(s)	126, 133, 334, 565, 625, 715
SfaNI	GCATC	2 cut(s)	171, 713
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	2 cut(s)	153, 329
SmiMI	CAYNNNNRTG	2 cut(s)	423, 613
SpeI	ACTAGT	1 cut(s)	932
Sse9I	AATT	8 cut(s)	41, 190, 396, 637, 978, 982, 1207, 1261
SsiI	CCGC	5 cut(s)	263, 392, 404, 605, 821
SspI	AATATT	2 cut(s)	356, 1241
SspMI	CTAG	5 cut(s)	645, 714, 915, 933, 1017
StyD4I	CCNGG	5 cut(s)	85, 185, 735, 972, 1115
StyI	CCWWGG	3 cut(s)	867, 1005, 1229
TaaI	ACNGT	2 cut(s)	425, 615
TaqI	TCGA	3 cut(s)	472, 837, 1201
TasI	AATT	8 cut(s)	41, 190, 396, 637, 978, 982, 1207, 1261
TatI	WGTACW	2 cut(s)	349, 720
TauI	GCSGC	2 cut(s)	406, 824
TfiI	GAWTC	4 cut(s)	337, 762, 845, 862
Tru1I	TTAA	2 cut(s)	981, 1025
Tru9I	TTAA	2 cut(s)	981, 1025
TscAI	CASTG	2 cut(s)	211, 430
TseFI	GTSAC	1 cut(s)	965
TseI	GCWGC	2 cut(s)	134, 710
Tsp45I	GTSAC	1 cut(s)	965
TspDTI	ATGAA	8 cut(s)	390, 569, 573, 671, 828, 911, 951, 1200
TspGWI	ACGGA	1 cut(s)	1263
TspRI	CASTG	2 cut(s)	211, 430
VpaK11BI	GGWCC	2 cut(s)	153, 329
VspI	ATTAAT	1 cut(s)	981
XapI	RAATTY	4 cut(s)	41, 190, 396, 1261
XbaI	TCTAGA	1 cut(s)	914
XceI	RCATGY	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	1078
XspI	CTAG	5 cut(s)	645, 714, 915, 933, 1017
Zsp2I	ATGCAT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.