FvH4_3g23420

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
16455738 .. 16463671
7934 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23420.t5

Sequence Viewer

Length: 1185 bp
ATGTTGAGAGTGGTTCTGCAACTGGAACTGCTCCTCTTTCTTTGCTTCGTAATTCTTCTCAGTATCCCCCTAAATCTCTCTTTAGCTTCCGAGTTAGAATTAGGCGCTGGTGATGATGATGAGGTTAAAAGAGACGACTTCCCTCCCCCGCCGGACTTTGTTTTTGGCGCTTCCTCCTCTGCTTATCAGGTGGAAGGTGCTGCAGACCAAGACGGGAGAACCCCAAGCATCTTGGACACCTATACGCATGCTGGGAAAATGCATGGAGCAACTGGAGATATAGCGTGTGATCAGTATCACAAATACAAGGAAGATGTGCAACTAATGGTGGATACTGGTTTAGAGGCATATAGATTTTCCATCTCATGGTCAAGACTTATACCCAATGGAAGAGGACCTGTCAATCCAAAGGGTCTACAATATTACAACAATCTCGTTGACCAATTAATCAGCAAGGGAATCCAGCCTCATGTTACTTTACACCACAGTGATCTCCCACAGGCACTCGACGATGACTATGGAGGATGGATTAGCCCTCAGATTATCAAAGACTTCACTGCATATGCAAATGTTTGCTTCGAACAGTTTGGAGATCGAGTTAAGCACTGGACTACTATGAATGAGCCAAATGTGTTTGTACTCGGGGGTTATGATATTGGATTCCTTCCACCGTCACGATGCTCAGCTCCATTTGGTGTTAACTGCTCGAGGGGTGACTCCACAACGGAACCATACCTGGCAATTCATAATTTCTTGTTATCTCATGCATCGGCTGCTGCACTGTACAAGCAAACCTACCAGCACAAGCAGCGTGGGTTTATAGGCATCAATGTACTTGCATTTTGGTTTATTCCTCGAACCGAAACCCATAAAGACCGAGCTGCTGCTCAAAGAGCTATGGACTTCTACTTCGGTTGGGTTGTGCATCCTTTGGTGTATGGAGAGTACCCTCAAGTAATGAAAAAGAATGCAGGCTCTAGACTTCCGACGTTCACCAGTGCTGAGTCTGCACTGGTCAAGGGCTCCTTGGACTTCATCGGACTCAATTACTATTACACGCAGTACGCCAAGGACAACTCTGCCGCCCTAAACATTCAAACAAGAGACTACGTAGCTGATTCGGCAATCCAGATTTCTCGTATGGCGCTTTGGATCACAATACATCAACATTGGAGTTTCCGATAA

Protein Analysis

395

Amino Acids

44.27

Weight (kDa)

5.84

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 50 - 507 4.7e-141 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 366
AccI GTMKAC 1 cut(s) 415
AciI CCGC 2 cut(s) 149, 1083
AclWI GGATC 1 cut(s) 1160
AfaI GTAC 5 cut(s) 639, 785, 834, 947, 1064
AfiI CCNNNNNNNGG 1 cut(s) 366
AgsI TTSAA 1 cut(s) 1097
AjnI CCWGG 1 cut(s) 735
AleI CACNNNNGTG 1 cut(s) 486
AluBI AGCT 5 cut(s) 86, 686, 881, 896, 1115
AluI AGCT 5 cut(s) 86, 686, 881, 896, 1115
Alw26I GTCTC 2 cut(s) 126, 1098
AlwI GGATC 1 cut(s) 1160
Ama87I CYCGRG 2 cut(s) 641, 706
ApeKI GCWGC 6 cut(s) 200, 773, 776, 808, 881, 884
ArsI GACNNNNNNTTYG 4 cut(s) 146, 178, 893, 925
AseI ATTAAT 1 cut(s) 446
AspLEI GCGC 3 cut(s) 107, 170, 1147
AspS9I GGNCC 1 cut(s) 395
AsuHPI GGTGA 3 cut(s) 122, 725, 985
AsuII TTCGAA 1 cut(s) 579
AvaI CYCGRG 2 cut(s) 641, 706
AvaII GGWCC 1 cut(s) 395
BanII GRGCYC 1 cut(s) 1025
BbvI GCAGC 6 cut(s) 187, 760, 763, 820, 868, 871
BccI CCATC 2 cut(s) 368, 519
BciT130I CCWGG 1 cut(s) 737
BciVI GTATCC 2 cut(s) 74, 325
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 2 cut(s) 126, 1098
BfaI CTAG 1 cut(s) 978
BfmI CTRYAG 1 cut(s) 201
BfoI RGCGCY 3 cut(s) 108, 171, 1148
BfuI GTATCC 2 cut(s) 74, 325
BisI GCNGC 7 cut(s) 201, 774, 777, 809, 882, 885, 1083
BlpI GCTNAGC 1 cut(s) 682
BlsI GCNGC 7 cut(s) 202, 775, 778, 810, 883, 886, 1084
Bme1390I CCNGG 1 cut(s) 737
Bme18I GGWCC 1 cut(s) 395
BmeT110I CYCGRG 2 cut(s) 641, 706
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 2 cut(s) 729, 1024
BmrFI CCNGG 1 cut(s) 737
BmsI GCATC 5 cut(s) 237, 668, 776, 834, 934
BpmI CTGGAG 1 cut(s) 294
Bpu1102I GCTNAGC 1 cut(s) 682
Bpu14I TTCGAA 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 936
BsaAI YACGTR 1 cut(s) 1111
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 2 cut(s) 1026, 1068
BsaXI ACNNNNNCTCC 2 cut(s) 582, 612
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse1I ACTGG 6 cut(s) 27, 277, 340, 611, 996, 1017
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 2 cut(s) 1026, 1068
BseGI GGATG 2 cut(s) 530, 925
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMII CTCAG 4 cut(s) 73, 551, 696, 993
BseNI ACTGG 6 cut(s) 27, 277, 340, 611, 996, 1017
BseRI GAGGAG 2 cut(s) 23, 166
BseXI GCAGC 6 cut(s) 187, 760, 763, 820, 868, 871
BseYI CCCAGC 1 cut(s) 251
BsgI GTGCAG 2 cut(s) 762, 993
BsiHKCI CYCGRG 2 cut(s) 641, 706
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 366
BsmAI GTCTC 2 cut(s) 126, 1098
BsmBI CGTCTC 1 cut(s) 126
BsmI GAATGC 1 cut(s) 973
BsoBI CYCGRG 2 cut(s) 641, 706
Bsp119I TTCGAA 1 cut(s) 579
Bsp1286I GDGCHC 1 cut(s) 1025
Bsp1407I TGTACA 1 cut(s) 783
Bsp143I GATC 4 cut(s) 289, 490, 592, 1152
Bsp1720I GCTNAGC 1 cut(s) 682
BspACI CCGC 2 cut(s) 149, 1083
BspCNI CTCAG 4 cut(s) 72, 550, 695, 994
BspLI GGNNCC 2 cut(s) 729, 1024
BspMAI CTGCAG 1 cut(s) 205
BspPI GGATC 1 cut(s) 1160
BspT104I TTCGAA 1 cut(s) 579
BsrGI TGTACA 1 cut(s) 783
BsrI ACTGG 6 cut(s) 27, 277, 340, 611, 996, 1017
BssECI CCNNGG 2 cut(s) 1026, 1068
BssMI GATC 4 cut(s) 289, 490, 592, 1152
BssT1I CCWWGG 2 cut(s) 1026, 1068
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 4 cut(s) 488, 585, 672, 783
Bst6I CTCTTC 1 cut(s) 385
BstAPI GCANNNNNTGC 1 cut(s) 773
BstAUI TGTACA 1 cut(s) 783
BstBAI YACGTR 1 cut(s) 1111
BstBI TTCGAA 1 cut(s) 579
BstC8I GCNNGC 2 cut(s) 249, 973
BstDEI CTNAG 4 cut(s) 59, 537, 682, 1002
BstF5I GGATG 2 cut(s) 530, 925
BstH2I RGCGCY 3 cut(s) 108, 171, 1148
BstHHI GCGC 3 cut(s) 107, 170, 1147
BstKTI GATC 4 cut(s) 292, 493, 595, 1155
BstMAI GTCTC 2 cut(s) 126, 1098
BstMBI GATC 4 cut(s) 289, 490, 592, 1152
BstMWI GCNNNNNNNGC 5 cut(s) 773, 808, 893, 1007, 1121
BstNI CCWGG 1 cut(s) 737
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 735
BstSFI CTRYAG 1 cut(s) 201
BstSNI TACGTA 1 cut(s) 1111
BstV1I GCAGC 6 cut(s) 187, 760, 763, 820, 868, 871
BsuI GTATCC 2 cut(s) 74, 325
BtsCI GGATG 2 cut(s) 530, 925
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 6 cut(s) 493, 555, 604, 779, 1003, 1010
Cac8I GCNNGC 2 cut(s) 249, 973
CfoI GCGC 3 cut(s) 107, 170, 1147
Cfr13I GGNCC 1 cut(s) 395
Csp6I GTAC 5 cut(s) 638, 784, 833, 946, 1063
CspCI CAANNNNNGTGG 2 cut(s) 793, 828
CviAII CATG 5 cut(s) 248, 263, 366, 470, 764
CviQI GTAC 5 cut(s) 638, 784, 833, 946, 1063
DdeI CTNAG 4 cut(s) 59, 537, 682, 1002
DpnI GATC 4 cut(s) 291, 492, 594, 1154
DpnII GATC 4 cut(s) 289, 490, 592, 1152
Eam1104I CTCTTC 1 cut(s) 385
EarI CTCTTC 1 cut(s) 385
Eco105I TACGTA 1 cut(s) 1111
Eco130I CCWWGG 2 cut(s) 1026, 1068
Eco24I GRGCYC 1 cut(s) 1025
Eco47I GGWCC 1 cut(s) 395
Eco88I CYCGRG 2 cut(s) 641, 706
EcoO109I RGGNCCY 1 cut(s) 395
EcoRII CCWGG 1 cut(s) 735
EcoT14I CCWWGG 2 cut(s) 1026, 1068
EcoT22I ATGCAT 2 cut(s) 264, 769
EcoT38I GRGCYC 1 cut(s) 1025
ErhI CCWWGG 2 cut(s) 1026, 1068
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 5 cut(s) 251, 266, 369, 473, 767
FalI AAGNNNNNCTT 2 cut(s) 1010, 1042
FatI CATG 5 cut(s) 247, 262, 365, 469, 763
FauI CCCGC 1 cut(s) 156
FauNDI CATATG 1 cut(s) 562
FbaI TGATCA 1 cut(s) 289
FblI GTMKAC 1 cut(s) 415
Fnu4HI GCNGC 7 cut(s) 201, 774, 777, 809, 882, 885, 1083
FokI GGATG 2 cut(s) 537, 912
FriOI GRGCYC 1 cut(s) 1025
Fsp4HI GCNGC 7 cut(s) 201, 774, 777, 809, 882, 885, 1083
FspBI CTAG 1 cut(s) 978
GlaI GCGC 3 cut(s) 106, 169, 1146
GluI GCNGC 7 cut(s) 201, 774, 777, 809, 882, 885, 1083
GsaI CCCAGC 1 cut(s) 255
GsuI CTGGAG 1 cut(s) 294
HaeII RGCGCY 3 cut(s) 108, 171, 1148
HapII CCGG 1 cut(s) 152
HhaI GCGC 3 cut(s) 107, 170, 1147
Hin1II CATG 5 cut(s) 251, 266, 369, 473, 767
Hin6I GCGC 3 cut(s) 105, 168, 1145
HinP1I GCGC 3 cut(s) 105, 168, 1145
HincII GTYRAC 2 cut(s) 439, 700
HindII GTYRAC 2 cut(s) 439, 700
HinfI GANTC 6 cut(s) 459, 660, 716, 1004, 1041, 1118
HpaI GTTAAC 1 cut(s) 700
HpaII CCGG 1 cut(s) 152
HphI GGTGA 3 cut(s) 122, 725, 985
Hpy166II GTNNAC 4 cut(s) 416, 439, 700, 993
Hpy188I TCNGA 5 cut(s) 91, 540, 987, 1040, 1181
Hpy188III TCNNGA 4 cut(s) 372, 675, 978, 1129
Hpy8I GTNNAC 4 cut(s) 416, 439, 700, 993
Hpy99I CGWCG 2 cut(s) 512, 991
HpyAV CCTTC 2 cut(s) 188, 674
HpyCH4III ACNGT 4 cut(s) 488, 585, 672, 783
HpyCH4IV ACGT 2 cut(s) 989, 1110
HpyF10VI GCNNNNNNNGC 5 cut(s) 773, 808, 893, 1007, 1121
HpyF3I CTNAG 4 cut(s) 59, 537, 682, 1002
HpySE526I ACGT 2 cut(s) 989, 1110
Hsp92II CATG 5 cut(s) 251, 266, 369, 473, 767
HspAI GCGC 3 cut(s) 105, 168, 1145
Ksp22I TGATCA 1 cut(s) 289
KspAI GTTAAC 1 cut(s) 700
Kzo9I GATC 4 cut(s) 289, 490, 592, 1152
LmnI GCTCC 4 cut(s) 36, 266, 691, 1028
Lsp1109I GCAGC 6 cut(s) 187, 760, 763, 820, 868, 871
LweI GCATC 5 cut(s) 237, 668, 776, 834, 934
MaeI CTAG 1 cut(s) 978
MaeII ACGT 2 cut(s) 989, 1110
MaeIII GTNAC 3 cut(s) 472, 672, 713
MalI GATC 4 cut(s) 291, 492, 594, 1154
MboI GATC 4 cut(s) 289, 490, 592, 1152
MboII GAAGA 3 cut(s) 47, 323, 402
MhlI GDGCHC 1 cut(s) 1025
MluCI AATT 6 cut(s) 51, 98, 443, 741, 748, 1045
MlyI GAGTC 3 cut(s) 710, 1013, 1035
MmeI TCCRAC 1 cut(s) 1010
Mph1103I ATGCAT 2 cut(s) 264, 769
MseI TTAA 4 cut(s) 126, 446, 600, 699
MslI CAYNNNNRTG 1 cut(s) 486
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 737
Mva1269I GAATGC 1 cut(s) 973
MvaI CCWGG 1 cut(s) 737
MwoI GCNNNNNNNGC 5 cut(s) 773, 808, 893, 1007, 1121
NdeI CATATG 1 cut(s) 562
NdeII GATC 4 cut(s) 289, 490, 592, 1152
NlaIII CATG 5 cut(s) 251, 266, 369, 473, 767
NlaIV GGNNCC 2 cut(s) 729, 1024
NmuCI GTSAC 2 cut(s) 672, 713
NsiI ATGCAT 2 cut(s) 264, 769
NspI RCATGY 1 cut(s) 251
NspV TTCGAA 1 cut(s) 579
OliI CACNNNNGTG 1 cut(s) 486
PaeI GCATGC 1 cut(s) 251
PaeR7I CTCGAG 1 cut(s) 706
PctI GAATGC 1 cut(s) 973
PfeI GAWTC 3 cut(s) 459, 660, 1118
PflMI CCANNNNNTGG 1 cut(s) 366
PkrI GCNGC 7 cut(s) 202, 775, 778, 810, 883, 886, 1084
PleI GAGTC 3 cut(s) 710, 1012, 1035
PpsI GAGTC 3 cut(s) 710, 1012, 1035
Ppu21I YACGTR 1 cut(s) 1111
PpuMI RGGWCCY 1 cut(s) 395
PshBI ATTAAT 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 395
Psp6I CCWGG 1 cut(s) 735
PspFI CCCAGC 1 cut(s) 251
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 2 cut(s) 729, 1024
PspPI GGNCC 1 cut(s) 395
PspPPI RGGWCCY 1 cut(s) 395
PspXI VCTCGAGB 1 cut(s) 706
PstI CTGCAG 1 cut(s) 205
RsaI GTAC 5 cut(s) 639, 785, 834, 947, 1064
RsaNI GTAC 5 cut(s) 638, 784, 833, 946, 1063
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 4 cut(s) 126, 446, 600, 699
SatI GCNGC 7 cut(s) 201, 774, 777, 809, 882, 885, 1083
Sau3AI GATC 4 cut(s) 289, 490, 592, 1152
Sau96I GGNCC 1 cut(s) 395
SchI GAGTC 3 cut(s) 710, 1013, 1035
ScrFI CCNGG 1 cut(s) 737
SduI GDGCHC 1 cut(s) 1025
SfaNI GCATC 5 cut(s) 237, 668, 776, 834, 934
SfcI CTRYAG 1 cut(s) 201
Sfr274I CTCGAG 1 cut(s) 706
SfuI TTCGAA 1 cut(s) 579
SinI GGWCC 1 cut(s) 395
SlaI CTCGAG 1 cut(s) 706
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 2 cut(s) 706, 951
SmoI CTYRAG 2 cut(s) 706, 951
SnaBI TACGTA 1 cut(s) 1111
SphI GCATGC 1 cut(s) 251
Sse9I AATT 6 cut(s) 51, 98, 443, 741, 748, 1045
SsiI CCGC 2 cut(s) 149, 1083
SspI AATATT 1 cut(s) 422
SspMI CTAG 1 cut(s) 978
StyD4I CCNGG 1 cut(s) 735
StyI CCWWGG 2 cut(s) 1026, 1068
TaaI ACNGT 4 cut(s) 488, 585, 672, 783
TaiI ACGT 2 cut(s) 992, 1113
TaqI TCGA 5 cut(s) 507, 579, 595, 707, 856
TaqII GACCGA 1 cut(s) 891
TasI AATT 6 cut(s) 51, 98, 443, 741, 748, 1045
TatI WGTACW 3 cut(s) 637, 783, 832
TauI GCSGC 1 cut(s) 1085
TfiI GAWTC 3 cut(s) 459, 660, 1118
Tru1I TTAA 4 cut(s) 126, 446, 600, 699
Tru9I TTAA 4 cut(s) 126, 446, 600, 699
TscAI CASTG 6 cut(s) 493, 562, 611, 786, 1003, 1017
TseFI GTSAC 2 cut(s) 672, 713
TseI GCWGC 6 cut(s) 200, 773, 776, 808, 881, 884
Tsp45I GTSAC 2 cut(s) 672, 713
TspDTI ATGAA 4 cut(s) 632, 734, 974, 1024
TspGWI ACGGA 1 cut(s) 740
TspRI CASTG 6 cut(s) 493, 562, 611, 786, 1003, 1017
Van91I CCANNNNNTGG 1 cut(s) 366
VpaK11BI GGWCC 1 cut(s) 395
VspI ATTAAT 1 cut(s) 446
XbaI TCTAGA 1 cut(s) 977
XceI RCATGY 1 cut(s) 251
XhoI CTCGAG 1 cut(s) 706
XmiI GTMKAC 1 cut(s) 415
XspI CTAG 1 cut(s) 978
Zsp2I ATGCAT 2 cut(s) 264, 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.