Rroxscaffold_1G00039370

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
56978998 .. 56992089
13092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039370.1

Sequence Viewer

Length: 1314 bp
ATGCATGGAGCCACTGGAGATGTAGCGTGTGATGAGTATCATAAATACAAGGAAGATGTGCAACTAATGGTGGATACTGGTTTAGAGGCGCATAGATTTTCCATCTCATGGTCAAGACTTATACCCAATGGAAGAGGACCTGTGAATCCAAAGGGTCTACAATATTACAACAATCTAATTGACCAACTAATCAGCAAAGGAATCCAGCCTCATGTTACTTTACACCACAGTGATCTCCCACAGGCACTCGAGAATGAGTATGGAGGATGGGTTAGCCCACAGATTGTAAAAGACTTCACTGCATATGCAAATGTTTGCTTTGAACAGTTTGGCGATCGCGTTAGGCATTGGACTACTATGAATGAGCCAAATGTATTTGTACTCGGGGGTTATGATATTGGATTCCTTCCACCGTCACGATGTTCAGCTCCATTTGGTTTTAATTGCTCCAAGGGTAACTCCTCAACTGAGCCCTACATGGCCGTTCATAATTTCTTGCTATCTCATGCATCAGCTGCTGCACTCTACAAGCAAACCTACCAGCACAAGCAGCGTGGGTTTGTAGGCATCAATGTATTTGCCTATTGGTTTATTCCTCGAACCGAAACCCATCAAGATAAAGTTGCTGCTCAAAGAGCTATGGACTTCTACTTTGGTTGGATTATGAATCCTTTGGTGTTCGGAGAGTACCCTCAAGTAATGAAAGAGAATGCAGGCTCTAGACTTCCGACGTTCACCAGTGCTGAGTCTTCAAAGGTCAAAGGCTCGTTGGACTTCATCGGACTCAATTACTATAACACATTGTATGCCAAGGACAACTCTGCCGCCCTAAACATTCCAAAAAGAGACTATATGGCTGATTCGGCAATCCAGATTTCTCCTTTGGATCACAGTACATCAACGTTTGAGTATCCGATAACACCTTGGGGTATGGAAGAACTGTTGGAATATATCAAACAAAACTACGGCAATCCTCCCTTATATATCCATGAAAATGGTCAACGAACTCGACGCAATTCATCGTTGGAGGATTGGTCCAGAATCGAATATTTGCATGGACACATTCACAGTCTGCTTAATGTTTTAAGGAATGGATCAAATGCCAGAGGCTATTTTACCTGGTCTCTCTTGGATTCACTTGAGCTTTTGGATGGCTATGAATCAAGCTACGGCCTTTACTACATCGATTTGGACGATCCTGATTTAAAAAGACAGCCTAAACTCTCTGCGCATTGGTACTCAAAGTTTCTGAAGAACAAAAACTTCACTCCACGTTCAGTTTCAGATGCTGATCAACATTACTTCTTTCAGTAG

Protein Analysis

437

Amino Acids

50.11

Weight (kDa)

6.21

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 3 - 421 3.2e-123 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1230
AccB7I CCANNNNNTGG 1 cut(s) 108
AccI GTMKAC 1 cut(s) 157
AccII CGCG 1 cut(s) 339
AciI CCGC 1 cut(s) 825
AclI AACGTT 1 cut(s) 902
AclWI GGATC 3 cut(s) 894, 1102, 1190
AcoI YGGCCR 1 cut(s) 480
AcuI CTGAAG 1 cut(s) 1271
AfaI GTAC 4 cut(s) 381, 689, 895, 1238
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 2 cut(s) 323, 753
AjnI CCWGG 1 cut(s) 1118
AleI CACNNNNGTG 1 cut(s) 228
AluBI AGCT 5 cut(s) 428, 515, 638, 1144, 1167
AluI AGCT 5 cut(s) 428, 515, 638, 1144, 1167
Alw26I GTCTC 2 cut(s) 840, 1128
AlwI GGATC 3 cut(s) 894, 1102, 1190
AlwNI CAGNNNCTG 2 cut(s) 518, 1289
Ama87I CYCGRG 2 cut(s) 248, 383
AoxI GGCC 2 cut(s) 480, 1171
ApeKI GCWGC 4 cut(s) 515, 518, 550, 626
ArsI GACNNNNNNTTYG 2 cut(s) 635, 667
AsiSI GCGATCGC 1 cut(s) 337
AspLEI GCGC 2 cut(s) 91, 1231
AspS9I GGNCC 2 cut(s) 137, 1035
AsuHPI GGTGA 1 cut(s) 727
AvaI CYCGRG 2 cut(s) 248, 383
AvaII GGWCC 2 cut(s) 137, 1035
BanII GRGCYC 1 cut(s) 474
BbsI GAAGAC 1 cut(s) 741
BbvI GCAGC 4 cut(s) 502, 505, 562, 613
BccI CCATC 4 cut(s) 110, 261, 618, 1145
BceAI ACGGC 3 cut(s) 467, 982, 1186
BciT130I CCWGG 1 cut(s) 1120
BciVI GTATCC 2 cut(s) 67, 921
BclI TGATCA 1 cut(s) 1291
BcoDI GTCTC 2 cut(s) 840, 1128
BfaI CTAG 1 cut(s) 720
BfuI GTATCC 2 cut(s) 67, 921
BisI GCNGC 5 cut(s) 516, 519, 551, 627, 825
BlsI GCNGC 5 cut(s) 517, 520, 552, 628, 826
Bme1390I CCNGG 1 cut(s) 1120
Bme18I GGWCC 2 cut(s) 137, 1035
BmeT110I CYCGRG 2 cut(s) 248, 383
BmgT120I GGNCC 2 cut(s) 137, 1035
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 1120
BmsI GCATC 3 cut(s) 518, 576, 1276
BpiI GAAGAC 1 cut(s) 741
BpmI CTGGAG 1 cut(s) 36
BpuEI CTTGAG 2 cut(s) 678, 1160
Bsa29I ATCGAT 1 cut(s) 1185
BsaBI GATNNNNATC 2 cut(s) 36, 1290
BsaI GGTCTC 1 cut(s) 1128
BsaJI CCNNGG 3 cut(s) 450, 810, 923
BsaXI ACNNNNNCTCC 4 cut(s) 255, 285, 1019, 1049
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 3 cut(s) 19, 82, 738
Bse8I GATNNNNATC 2 cut(s) 36, 1290
BseBI CCWGG 1 cut(s) 1120
BseCI ATCGAT 1 cut(s) 1185
BseDI CCNNGG 3 cut(s) 450, 810, 923
BseGI GGATG 2 cut(s) 272, 1156
BseJI GATNNNNATC 2 cut(s) 36, 1290
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 2 cut(s) 459, 735
BseNI ACTGG 3 cut(s) 19, 82, 738
BseRI GAGGAG 1 cut(s) 451
BseXI GCAGC 4 cut(s) 502, 505, 562, 613
BsgI GTGCAG 1 cut(s) 504
Bsh1236I CGCG 1 cut(s) 339
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 2 cut(s) 482, 1173
BshVI ATCGAT 1 cut(s) 1185
BsiEI CGRYCG 1 cut(s) 337
BsiHKCI CYCGRG 2 cut(s) 248, 383
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 2 cut(s) 840, 1128
BsmI GAATGC 1 cut(s) 715
BsnI GGCC 2 cut(s) 482, 1173
Bso31I GGTCTC 1 cut(s) 1128
BsoBI CYCGRG 2 cut(s) 248, 383
Bsp1286I GDGCHC 1 cut(s) 474
Bsp143I GATC 6 cut(s) 232, 334, 886, 1094, 1195, 1291
BspACI CCGC 1 cut(s) 825
BspANI GGCC 2 cut(s) 482, 1173
BspCNI CTCAG 2 cut(s) 460, 736
BspDI ATCGAT 1 cut(s) 1185
BspFNI CGCG 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 10
BspPI GGATC 3 cut(s) 894, 1102, 1190
BspTNI GGTCTC 1 cut(s) 1128
BsrI ACTGG 3 cut(s) 19, 82, 738
BssECI CCNNGG 3 cut(s) 450, 810, 923
BssMI GATC 6 cut(s) 232, 334, 886, 1094, 1195, 1291
BssT1I CCWWGG 3 cut(s) 450, 810, 923
Bst2UI CCWGG 1 cut(s) 1120
Bst4CI ACNGT 6 cut(s) 230, 327, 414, 893, 942, 1070
Bst6I CTCTTC 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 515
BstC8I GCNNGC 1 cut(s) 715
BstDEI CTNAG 2 cut(s) 468, 744
BstF5I GGATG 2 cut(s) 272, 1156
BstFNI CGCG 1 cut(s) 339
BstHHI GCGC 2 cut(s) 91, 1231
BstKTI GATC 6 cut(s) 235, 337, 889, 1097, 1198, 1294
BstMAI GTCTC 2 cut(s) 840, 1128
BstMBI GATC 6 cut(s) 232, 334, 886, 1094, 1195, 1291
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 4 cut(s) 515, 550, 635, 863
BstNI CCWGG 1 cut(s) 1120
BstSCI CCNGG 1 cut(s) 1118
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 4 cut(s) 502, 505, 562, 613
BstV2I GAAGAC 1 cut(s) 741
BstXI CCANNNNNNTGG 1 cut(s) 995
Bsu15I ATCGAT 1 cut(s) 1185
BsuI GTATCC 2 cut(s) 67, 921
BsuRI GGCC 2 cut(s) 482, 1173
BsuTUI ATCGAT 1 cut(s) 1185
BtsCI GGATG 2 cut(s) 272, 1156
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 4 cut(s) 12, 235, 297, 745
Cac8I GCNNGC 1 cut(s) 715
CaiI CAGNNNCTG 2 cut(s) 518, 1289
CfoI GCGC 2 cut(s) 91, 1231
Cfr13I GGNCC 2 cut(s) 137, 1035
ClaI ATCGAT 1 cut(s) 1185
CseI GACGC 1 cut(s) 1020
CsiI ACCWGGT 1 cut(s) 1118
Csp6I GTAC 4 cut(s) 380, 688, 894, 1237
CspCI CAANNNNNGTGG 2 cut(s) 535, 570
CviAII CATG 7 cut(s) 5, 108, 212, 478, 506, 989, 1055
CviQI GTAC 4 cut(s) 380, 688, 894, 1237
DdeI CTNAG 2 cut(s) 468, 744
DpnI GATC 6 cut(s) 234, 336, 888, 1096, 1197, 1293
DpnII GATC 6 cut(s) 232, 334, 886, 1094, 1195, 1291
DraI TTTAAA 1 cut(s) 1206
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
Eco130I CCWWGG 3 cut(s) 450, 810, 923
Eco24I GRGCYC 1 cut(s) 474
Eco31I GGTCTC 1 cut(s) 1128
Eco47I GGWCC 2 cut(s) 137, 1035
Eco57I CTGAAG 1 cut(s) 1271
Eco88I CYCGRG 2 cut(s) 248, 383
EcoO109I RGGNCCY 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 1118
EcoT14I CCWWGG 3 cut(s) 450, 810, 923
EcoT22I ATGCAT 2 cut(s) 6, 511
EcoT38I GRGCYC 1 cut(s) 474
ErhI CCWWGG 3 cut(s) 450, 810, 923
FaeI CATG 7 cut(s) 8, 111, 215, 481, 509, 992, 1058
FatI CATG 7 cut(s) 4, 107, 211, 477, 505, 988, 1054
FauNDI CATATG 1 cut(s) 304
FbaI TGATCA 1 cut(s) 1291
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 5 cut(s) 516, 519, 551, 627, 825
FokI GGATG 2 cut(s) 279, 1163
FriOI GRGCYC 1 cut(s) 474
Fsp4HI GCNGC 5 cut(s) 516, 519, 551, 627, 825
FspBI CTAG 1 cut(s) 720
FspI TGCGCA 1 cut(s) 1230
GlaI GCGC 2 cut(s) 90, 1230
GluI GCNGC 5 cut(s) 516, 519, 551, 627, 825
GsuI CTGGAG 1 cut(s) 36
HaeIII GGCC 2 cut(s) 482, 1173
HgaI GACGC 1 cut(s) 1020
HhaI GCGC 2 cut(s) 91, 1231
Hin1II CATG 7 cut(s) 8, 111, 215, 481, 509, 992, 1058
Hin6I GCGC 2 cut(s) 89, 1229
HinP1I GCGC 2 cut(s) 89, 1229
HincII GTYRAC 1 cut(s) 1001
HindII GTYRAC 1 cut(s) 1001
HphI GGTGA 1 cut(s) 727
Hpy166II GTNNAC 3 cut(s) 158, 735, 1001
Hpy188I TCNGA 6 cut(s) 683, 729, 782, 915, 1251, 1285
Hpy188III TCNNGA 8 cut(s) 114, 250, 417, 614, 720, 871, 1038, 1199
Hpy8I GTNNAC 3 cut(s) 158, 735, 1001
Hpy99I CGWCG 2 cut(s) 733, 1014
HpyAV CCTTC 1 cut(s) 416
HpyCH4III ACNGT 6 cut(s) 230, 327, 414, 893, 942, 1070
HpyCH4IV ACGT 3 cut(s) 731, 902, 1273
HpyCH4V TGCA 8 cut(s) 4, 61, 302, 308, 509, 521, 713, 1054
HpyF10VI GCNNNNNNNGC 4 cut(s) 515, 550, 635, 863
HpyF3I CTNAG 2 cut(s) 468, 744
HpySE526I ACGT 3 cut(s) 731, 902, 1273
Hsp92II CATG 7 cut(s) 8, 111, 215, 481, 509, 992, 1058
HspAI GCGC 2 cut(s) 89, 1229
Ksp22I TGATCA 1 cut(s) 1291
Kzo9I GATC 6 cut(s) 232, 334, 886, 1094, 1195, 1291
LmnI GCTCC 3 cut(s) 8, 433, 452
Lsp1109I GCAGC 4 cut(s) 502, 505, 562, 613
LweI GCATC 3 cut(s) 518, 576, 1276
MabI ACCWGGT 1 cut(s) 1118
MaeI CTAG 1 cut(s) 720
MaeII ACGT 3 cut(s) 731, 902, 1273
MaeIII GTNAC 3 cut(s) 214, 414, 455
MalI GATC 6 cut(s) 234, 336, 888, 1096, 1197, 1293
MboI GATC 6 cut(s) 232, 334, 886, 1094, 1195, 1291
MboII GAAGA 5 cut(s) 65, 144, 741, 947, 1264
MhlI GDGCHC 1 cut(s) 474
MluCI AATT 5 cut(s) 177, 442, 490, 787, 1015
MlyI GAGTC 2 cut(s) 755, 777
MmeI TCCRAC 5 cut(s) 638, 750, 752, 924, 1005
Mph1103I ATGCAT 2 cut(s) 6, 511
MseI TTAA 4 cut(s) 441, 1077, 1085, 1205
MslI CAYNNNNRTG 2 cut(s) 228, 993
MspA1I CMGCKG 1 cut(s) 515
MspR9I CCNGG 1 cut(s) 1120
Mva1269I GAATGC 1 cut(s) 715
MvaI CCWGG 1 cut(s) 1120
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 4 cut(s) 515, 550, 635, 863
NdeI CATATG 1 cut(s) 304
NdeII GATC 6 cut(s) 232, 334, 886, 1094, 1195, 1291
NlaIII CATG 7 cut(s) 8, 111, 215, 481, 509, 992, 1058
NlaIV GGNNCC 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 414
NsbI TGCGCA 1 cut(s) 1230
NsiI ATGCAT 2 cut(s) 6, 511
OliI CACNNNNGTG 1 cut(s) 228
PaeR7I CTCGAG 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 1191
PctI GAATGC 1 cut(s) 715
PfeI GAWTC 8 cut(s) 145, 201, 402, 667, 860, 1041, 1133, 1160
PflMI CCANNNNNTGG 1 cut(s) 108
PkrI GCNGC 5 cut(s) 517, 520, 552, 628, 826
Ple19I CGATCG 1 cut(s) 337
PleI GAGTC 2 cut(s) 754, 777
PpsI GAGTC 2 cut(s) 754, 777
PpuMI RGGWCCY 1 cut(s) 137
Psp1406I AACGTT 1 cut(s) 902
Psp5II RGGWCCY 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 1118
PspGI CCWGG 1 cut(s) 1118
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 2 cut(s) 137, 1035
PspPPI RGGWCCY 1 cut(s) 137
PstNI CAGNNNCTG 2 cut(s) 518, 1289
PvuI CGATCG 1 cut(s) 337
PvuII CAGCTG 1 cut(s) 515
RgaI GCGATCGC 1 cut(s) 337
RsaI GTAC 4 cut(s) 381, 689, 895, 1238
RsaNI GTAC 4 cut(s) 380, 688, 894, 1237
RseI CAYNNNNRTG 2 cut(s) 228, 993
SaqAI TTAA 4 cut(s) 441, 1077, 1085, 1205
SatI GCNGC 5 cut(s) 516, 519, 551, 627, 825
Sau3AI GATC 6 cut(s) 232, 334, 886, 1094, 1195, 1291
Sau96I GGNCC 2 cut(s) 137, 1035
SchI GAGTC 2 cut(s) 755, 777
ScrFI CCNGG 1 cut(s) 1120
SduI GDGCHC 1 cut(s) 474
SexAI ACCWGGT 1 cut(s) 1118
SfaAI GCGATCGC 1 cut(s) 337
SfaNI GCATC 3 cut(s) 518, 576, 1276
Sfr274I CTCGAG 1 cut(s) 248
SgfI GCGATCGC 1 cut(s) 337
SinI GGWCC 2 cut(s) 137, 1035
SlaI CTCGAG 1 cut(s) 248
SmiMI CAYNNNNRTG 2 cut(s) 228, 993
SmlI CTYRAG 3 cut(s) 248, 693, 1139
SmoI CTYRAG 3 cut(s) 248, 693, 1139
Sse9I AATT 5 cut(s) 177, 442, 490, 787, 1015
SsiI CCGC 1 cut(s) 825
SspI AATATT 2 cut(s) 164, 1049
SspMI CTAG 1 cut(s) 720
StyD4I CCNGG 1 cut(s) 1118
StyI CCWWGG 3 cut(s) 450, 810, 923
TaaI ACNGT 6 cut(s) 230, 327, 414, 893, 942, 1070
TaiI ACGT 3 cut(s) 734, 905, 1276
TaqI TCGA 5 cut(s) 249, 598, 1009, 1044, 1185
TasI AATT 5 cut(s) 177, 442, 490, 787, 1015
TatI WGTACW 2 cut(s) 379, 893
TauI GCSGC 1 cut(s) 827
TfiI GAWTC 8 cut(s) 145, 201, 402, 667, 860, 1041, 1133, 1160
Tru1I TTAA 4 cut(s) 441, 1077, 1085, 1205
Tru9I TTAA 4 cut(s) 441, 1077, 1085, 1205
TscAI CASTG 4 cut(s) 19, 235, 304, 745
TseFI GTSAC 1 cut(s) 414
TseI GCWGC 4 cut(s) 515, 518, 550, 626
Tsp45I GTSAC 1 cut(s) 414
TspDTI ATGAA 8 cut(s) 374, 476, 680, 716, 766, 1005, 1008, 1173
TspRI CASTG 4 cut(s) 19, 235, 304, 745
Van91I CCANNNNNTGG 1 cut(s) 108
VpaK11BI GGWCC 2 cut(s) 137, 1035
XbaI TCTAGA 1 cut(s) 719
XhoI CTCGAG 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 157
XspI CTAG 1 cut(s) 720
Zsp2I ATGCAT 2 cut(s) 6, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.