RchiOBHm_Chr5g0041251

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000569
Physical Location & Seq
Forward (+)
35978769 .. 35982370
3602 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31969

Sequence Viewer

Length: 330 bp
ATGGTGGATATTGGTTTAGAGGCGTATAGATTTTCCATCTCATGGTCAAGACTCATACCCAATACAAAAGACTTCACTGCATATGCAAATGTTTGCTTCGAACAGTTTGGCGATCGAGTTGGGCATTGGACTACTATGAATGAGCCAAATGTATTTGTACTCGGTGGTTATGATATTGGATTCCTTCCACCACAACGATGCTCAGCGCCATTTGGTTTTAATTGCTCGAGGGTTTCCGATAACATCTTGGGGTATGGAAGGGCTGTTGGAATATATCAAACAACACTCGGCAATCCTCCCTTATATATCCATGAAAATGGTATATATTAA

Protein Analysis

109

Amino Acids

12.25

Weight (kDa)

5.49

Isoelectric Point (pI)

24.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 23 - 65 4.1e-11 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 42
AfaI GTAC 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 42
Ama87I CYCGRG 1 cut(s) 226
AspLEI GCGC 1 cut(s) 208
AsuII TTCGAA 1 cut(s) 99
AvaI CYCGRG 1 cut(s) 226
BccI CCATC 1 cut(s) 44
BfoI RGCGCY 1 cut(s) 209
BlpI GCTNAGC 1 cut(s) 202
BmeT110I CYCGRG 1 cut(s) 226
BmsI GCATC 1 cut(s) 188
Bpu1102I GCTNAGC 1 cut(s) 202
Bpu14I TTCGAA 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 216
Bsh1285I CGRYCG 1 cut(s) 115
BsiEI CGRYCG 1 cut(s) 115
BsiHKCI CYCGRG 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 226
Bsp119I TTCGAA 1 cut(s) 99
Bsp143I GATC 1 cut(s) 112
Bsp1720I GCTNAGC 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 215
BspT104I TTCGAA 1 cut(s) 99
BssMI GATC 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 105
BstBI TTCGAA 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 202
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 1 cut(s) 115
BstMBI GATC 1 cut(s) 112
BstMCI CGRYCG 1 cut(s) 115
BstXI CCANNNNNNTGG 1 cut(s) 317
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
CfoI GCGC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 158
CviAII CATG 2 cut(s) 42, 311
CviJI RGCY 2 cut(s) 145, 263
CviKI_1 RGCY 2 cut(s) 145, 263
CviQI GTAC 1 cut(s) 158
DdeI CTNAG 1 cut(s) 202
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 226
FaeI CATG 2 cut(s) 45, 314
FatI CATG 2 cut(s) 41, 310
FauNDI CATATG 1 cut(s) 82
GlaI GCGC 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 209
HhaI GCGC 1 cut(s) 208
Hin1II CATG 2 cut(s) 45, 314
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 2 cut(s) 51, 180
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 1 cut(s) 48
HpyAV CCTTC 2 cut(s) 194, 252
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 80, 86
HpyF3I CTNAG 1 cut(s) 202
Hsp92II CATG 2 cut(s) 45, 314
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 1 cut(s) 112
LweI GCATC 1 cut(s) 188
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MluCI AATT 1 cut(s) 220
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 3 cut(s) 13, 222, 306
MseI TTAA 2 cut(s) 219, 328
MslI CAYNNNNRTG 2 cut(s) 196, 315
NdeI CATATG 1 cut(s) 82
NdeII GATC 1 cut(s) 112
NlaIII CATG 2 cut(s) 45, 314
NmeAIII GCCGAG 1 cut(s) 267
NspV TTCGAA 1 cut(s) 99
PaeR7I CTCGAG 1 cut(s) 226
PfeI GAWTC 1 cut(s) 180
PflMI CCANNNNNTGG 1 cut(s) 42
Ple19I CGATCG 1 cut(s) 115
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PspXI VCTCGAGB 1 cut(s) 226
PvuI CGATCG 1 cut(s) 115
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
RseI CAYNNNNRTG 2 cut(s) 196, 315
SaqAI TTAA 2 cut(s) 219, 328
Sau3AI GATC 1 cut(s) 112
SchI GAGTC 1 cut(s) 45
SfaNI GCATC 1 cut(s) 188
Sfr274I CTCGAG 1 cut(s) 226
SfuI TTCGAA 1 cut(s) 99
SgeI CNNG 9 cut(s) 54, 60, 128, 173, 238, 240, 259, 299, 323
SlaI CTCGAG 1 cut(s) 226
SmiMI CAYNNNNRTG 2 cut(s) 196, 315
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 1 cut(s) 220
TaaI ACNGT 1 cut(s) 105
TaqI TCGA 3 cut(s) 99, 115, 227
TasI AATT 1 cut(s) 220
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 2 cut(s) 219, 328
Tru9I TTAA 2 cut(s) 219, 328
TscAI CASTG 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 152, 327
TspRI CASTG 1 cut(s) 82
Van91I CCANNNNNTGG 1 cut(s) 42
XhoI CTCGAG 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.