Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Reverse (-)

8503894 .. 8504145

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0063600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGACTAATGGGACTGTTAATGGAAACAGGATTTCAGAGAGCATCAATATAAGTCAGCTTGCTGATGATCAAAGGTTCAAGCATCATGGCGTGTGCCGTATAAGCTTGCTCAACAAGGAGATCTCAACAGAGCATAATGGAGAGCCCCAGAAAAGTACAAAGCTCCTCAACATAGTATCTCTTACAAAGTTTCAATCTTCTAATTTTGTTATCCCAAAAGCATACTTGCATTTTATATTTCTGATAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

83

Amino Acids

9.35

Weight (kDa)

9.36

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	79, 194
AluBI	AGCT	3 cut(s)	58, 105, 163
AluI	AGCT	3 cut(s)	58, 105, 163
BanII	GRGCYC	1 cut(s)	147
BceAI	ACGGC	1 cut(s)	81
BclI	TGATCA	1 cut(s)	67
BglII	AGATCT	1 cut(s)	120
BmsI	GCATC	2 cut(s)	51, 91
BseRI	GAGGAG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	67, 120
BssMI	GATC	2 cut(s)	67, 120
Bst4CI	ACNGT	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	60, 107
BstKTI	GATC	2 cut(s)	70, 123
BstMBI	GATC	2 cut(s)	67, 120
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
Cac8I	GCNNGC	2 cut(s)	60, 107
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	4 cut(s)	58, 105, 145, 163
CviKI_1	RGCY	4 cut(s)	58, 105, 145, 163
CviQI	GTAC	1 cut(s)	156
DpnI	GATC	2 cut(s)	69, 122
DpnII	GATC	2 cut(s)	67, 120
Eco24I	GRGCYC	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	147
FaeI	CATG	1 cut(s)	89
FaiI	YATR	7 cut(s)	50, 87, 101, 135, 173, 223, 236
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	1 cut(s)	85
FbaI	TGATCA	1 cut(s)	67
FriOI	GRGCYC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	89
HindIII	AAGCTT	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	37, 243
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	67, 120
LmnI	GCTCC	1 cut(s)	168
LpnPI	CCDG	2 cut(s)	13, 161
LweI	GCATC	2 cut(s)	51, 91
MalI	GATC	2 cut(s)	69, 122
MboI	GATC	2 cut(s)	67, 120
MboII	GAAGA	1 cut(s)	189
MflI	RGATCY	1 cut(s)	120
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	1 cut(s)	202
MnlI	CCTC	1 cut(s)	176
MseI	TTAA	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	102
NdeII	GATC	2 cut(s)	67, 120
NlaIII	CATG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	120
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	18
Sau3AI	GATC	2 cut(s)	67, 120
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	4 cut(s)	60, 77, 107, 165
SfaNI	GCATC	2 cut(s)	51, 91
SgeI	CNNG	9 cut(s)	40, 71, 91, 98, 103, 118, 127, 160, 238
Sse9I	AATT	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	16
TasI	AATT	1 cut(s)	202
TatI	WGTACW	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.