Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| p450 | PF00067 | 49 - 501 | 3e-98 | Cytochrome P450 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 431, 596 |
| Acc65I | GGTACC | 1 cut(s) | 1211 |
| AccB1I | GGYRCC | 2 cut(s) | 194, 1211 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 173 |
| AccII | CGCG | 1 cut(s) | 965 |
| AciI | CCGC | 5 cut(s) | 256, 424, 951, 963, 1162 |
| AclWI | GGATC | 2 cut(s) | 1295, 1308 |
| AcoI | YGGCCR | 2 cut(s) | 831, 1389 |
| AcsI | RAATTY | 2 cut(s) | 212, 1481 |
| AcuI | CTGAAG | 1 cut(s) | 941 |
| AfaI | GTAC | 3 cut(s) | 741, 930, 1213 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 173, 191, 1245 |
| AgsI | TTSAA | 3 cut(s) | 1031, 1073, 1412 |
| AhlI | ACTAGT | 1 cut(s) | 364 |
| AjnI | CCWGG | 3 cut(s) | 148, 1296, 1532 |
| Alw21I | GWGCWC | 2 cut(s) | 122, 1554 |
| Alw26I | GTCTC | 2 cut(s) | 953, 1115 |
| AlwI | GGATC | 2 cut(s) | 1295, 1308 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 671 |
| Ama87I | CYCGRG | 1 cut(s) | 1252 |
| AoxI | GGCC | 5 cut(s) | 151, 238, 831, 1236, 1389 |
| ApeKI | GCWGC | 4 cut(s) | 359, 427, 635, 1003 |
| ApoI | RAATTY | 2 cut(s) | 212, 1481 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 317, 349, 380, 412 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 312, 501, 1077 |
| Asp718I | GGTACC | 1 cut(s) | 1211 |
| AspLEI | GCGC | 2 cut(s) | 432, 597 |
| AspS9I | GGNCC | 5 cut(s) | 152, 239, 410, 1236, 1249 |
| AsuHPI | GGTGA | 5 cut(s) | 197, 208, 790, 851, 1507 |
| AsuII | TTCGAA | 1 cut(s) | 658 |
| AsuNHI | GCTAGC | 1 cut(s) | 23 |
| AvaI | CYCGRG | 1 cut(s) | 1252 |
| AvaII | GGWCC | 2 cut(s) | 410, 1249 |
| BaeGI | GKGCMC | 1 cut(s) | 1161 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1203, 1236 |
| BalI | TGGCCA | 1 cut(s) | 833 |
| BamHI | GGATCC | 1 cut(s) | 1300 |
| BanI | GGYRCC | 2 cut(s) | 194, 1211 |
| BanII | GRGCYC | 1 cut(s) | 1554 |
| BbsI | GAAGAC | 1 cut(s) | 1213 |
| Bbv12I | GWGCWC | 2 cut(s) | 122, 1554 |
| BbvCI | CCTCAGC | 1 cut(s) | 639 |
| BbvI | GCAGC | 4 cut(s) | 346, 414, 647, 1015 |
| BccI | CCATC | 2 cut(s) | 673, 737 |
| BceAI | ACGGC | 1 cut(s) | 984 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 892, 926, 1297, 1331 |
| BciT130I | CCWGG | 3 cut(s) | 150, 1298, 1534 |
| BciVI | GTATCC | 1 cut(s) | 170 |
| BclI | TGATCA | 1 cut(s) | 282 |
| BcoDI | GTCTC | 2 cut(s) | 953, 1115 |
| BcuI | ACTAGT | 1 cut(s) | 364 |
| BfaI | CTAG | 6 cut(s) | 24, 71, 108, 365, 1154, 1305 |
| BfmI | CTRYAG | 1 cut(s) | 156 |
| BfuI | GTATCC | 1 cut(s) | 170 |
| BisI | GCNGC | 5 cut(s) | 360, 425, 428, 636, 1004 |
| BlpI | GCTNAGC | 2 cut(s) | 455, 993 |
| BlsI | GCNGC | 5 cut(s) | 361, 426, 429, 637, 1005 |
| BmcAI | AGTACT | 1 cut(s) | 930 |
| Bme1390I | CCNGG | 3 cut(s) | 150, 1298, 1534 |
| Bme18I | GGWCC | 2 cut(s) | 410, 1249 |
| BmeT110I | CYCGRG | 1 cut(s) | 1252 |
| BmgT120I | GGNCC | 5 cut(s) | 152, 239, 410, 1236, 1249 |
| BmiI | GGNNCC | 8 cut(s) | 98, 196, 955, 1213, 1250, 1251, 1295, 1302 |
| BmrFI | CCNGG | 3 cut(s) | 150, 1298, 1534 |
| BmsI | GCATC | 5 cut(s) | 10, 441, 990, 1015, 1096 |
| BmtI | GCTAGC | 1 cut(s) | 27 |
| BpiI | GAAGAC | 1 cut(s) | 1213 |
| BpmI | CTGGAG | 1 cut(s) | 666 |
| Bpu10I | CCTNAGC | 1 cut(s) | 639 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 455, 993 |
| Bpu14I | TTCGAA | 1 cut(s) | 658 |
| Bsa29I | ATCGAT | 1 cut(s) | 902 |
| BsaBI | GATNNNNATC | 1 cut(s) | 42 |
| BsaI | GGTCTC | 1 cut(s) | 953 |
| BsaJI | CCNNGG | 5 cut(s) | 259, 828, 1272, 1386, 1532 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 173, 191, 1245 |
| Bse1I | ACTGG | 1 cut(s) | 676 |
| Bse3DI | GCAATG | 3 cut(s) | 34, 140, 978 |
| Bse8I | GATNNNNATC | 1 cut(s) | 42 |
| BseBI | CCWGG | 3 cut(s) | 150, 1298, 1534 |
| BseCI | ATCGAT | 1 cut(s) | 902 |
| BseDI | CCNNGG | 5 cut(s) | 259, 828, 1272, 1386, 1532 |
| BseGI | GGATG | 4 cut(s) | 25, 1006, 1111, 1404 |
| BseJI | GATNNNNATC | 1 cut(s) | 42 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 173, 191, 1245 |
| BseMI | GCAATG | 3 cut(s) | 34, 140, 978 |
| BseMII | CTCAG | 5 cut(s) | 61, 479, 630, 642, 984 |
| BseNI | ACTGG | 1 cut(s) | 676 |
| BseSI | GKGCMC | 1 cut(s) | 1161 |
| BseXI | GCAGC | 4 cut(s) | 346, 414, 647, 1015 |
| BsgI | GTGCAG | 3 cut(s) | 345, 705, 1125 |
| Bsh1236I | CGCG | 1 cut(s) | 965 |
| BshFI | GGCC | 5 cut(s) | 153, 240, 833, 1238, 1391 |
| BshNI | GGYRCC | 2 cut(s) | 194, 1211 |
| BshVI | ATCGAT | 1 cut(s) | 902 |
| BsiHKAI | GWGCWC | 2 cut(s) | 122, 1554 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1252 |
| BslFI | GGGAC | 3 cut(s) | 401, 1262, 1277 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 173, 191, 1245 |
| BsmAI | GTCTC | 2 cut(s) | 953, 1115 |
| BsmFI | GGGAC | 3 cut(s) | 401, 1262, 1277 |
| BsmI | GAATGC | 3 cut(s) | 822, 1234, 1429 |
| BsnI | GGCC | 5 cut(s) | 153, 240, 833, 1238, 1391 |
| Bso31I | GGTCTC | 1 cut(s) | 953 |
| BsoBI | CYCGRG | 1 cut(s) | 1252 |
| Bsp119I | TTCGAA | 1 cut(s) | 658 |
| Bsp1286I | GDGCHC | 3 cut(s) | 122, 1161, 1554 |
| Bsp1407I | TGTACA | 1 cut(s) | 739 |
| Bsp143I | GATC | 2 cut(s) | 282, 1300 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 455, 993 |
| BspACI | CCGC | 5 cut(s) | 256, 424, 951, 963, 1162 |
| BspANI | GGCC | 5 cut(s) | 153, 240, 833, 1238, 1391 |
| BspCNI | CTCAG | 5 cut(s) | 60, 480, 631, 643, 985 |
| BspDI | ATCGAT | 1 cut(s) | 902 |
| BspFNI | CGCG | 1 cut(s) | 965 |
| BspHI | TCATGA | 1 cut(s) | 883 |
| BspLI | GGNNCC | 8 cut(s) | 98, 196, 955, 1213, 1250, 1251, 1295, 1302 |
| BspOI | GCTAGC | 1 cut(s) | 27 |
| BspPI | GGATC | 2 cut(s) | 1295, 1308 |
| BspT104I | TTCGAA | 1 cut(s) | 658 |
| BspT107I | GGYRCC | 2 cut(s) | 194, 1211 |
| BspTNI | GGTCTC | 1 cut(s) | 953 |
| BsrDI | GCAATG | 3 cut(s) | 34, 140, 978 |
| BsrGI | TGTACA | 1 cut(s) | 739 |
| BsrI | ACTGG | 1 cut(s) | 676 |
| BssECI | CCNNGG | 5 cut(s) | 259, 828, 1272, 1386, 1532 |
| BssMI | GATC | 2 cut(s) | 282, 1300 |
| BssT1I | CCWWGG | 3 cut(s) | 828, 1272, 1386 |
| Bst2UI | CCWGG | 3 cut(s) | 150, 1298, 1534 |
| Bst4CI | ACNGT | 4 cut(s) | 209, 331, 410, 1219 |
| Bst6I | CTCTTC | 3 cut(s) | 487, 492, 1068 |
| BstAUI | TGTACA | 1 cut(s) | 739 |
| BstBI | TTCGAA | 1 cut(s) | 658 |
| BstC8I | GCNNGC | 1 cut(s) | 25 |
| BstDEI | CTNAG | 8 cut(s) | 47, 190, 455, 488, 639, 651, 993, 1560 |
| BstEII | GGTNACC | 1 cut(s) | 778 |
| BstF5I | GGATG | 4 cut(s) | 25, 1006, 1111, 1404 |
| BstFNI | CGCG | 1 cut(s) | 965 |
| BstHHI | GCGC | 2 cut(s) | 432, 597 |
| BstKTI | GATC | 2 cut(s) | 285, 1303 |
| BstMAI | GTCTC | 2 cut(s) | 953, 1115 |
| BstMBI | GATC | 2 cut(s) | 282, 1300 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 264, 641, 1003, 1170 |
| BstNI | CCWGG | 3 cut(s) | 150, 1298, 1534 |
| BstNSI | RCATGY | 1 cut(s) | 601 |
| BstPI | GGTNACC | 1 cut(s) | 778 |
| BstSCI | CCNGG | 3 cut(s) | 148, 1296, 1532 |
| BstSFI | CTRYAG | 1 cut(s) | 156 |
| BstSLI | GKGCMC | 1 cut(s) | 1161 |
| BstUI | CGCG | 1 cut(s) | 965 |
| BstV1I | GCAGC | 4 cut(s) | 346, 414, 647, 1015 |
| BstV2I | GAAGAC | 1 cut(s) | 1213 |
| BstX2I | RGATCY | 1 cut(s) | 1300 |
| BstYI | RGATCY | 1 cut(s) | 1300 |
| Bsu15I | ATCGAT | 1 cut(s) | 902 |
| BsuI | GTATCC | 1 cut(s) | 170 |
| BsuRI | GGCC | 5 cut(s) | 153, 240, 833, 1238, 1391 |
| BsuTUI | ATCGAT | 1 cut(s) | 902 |
| BtgZI | GCGATG | 1 cut(s) | 376 |
| BtsCI | GGATG | 4 cut(s) | 25, 1006, 1111, 1404 |
| BtsI | GCAGTG | 2 cut(s) | 672, 1142 |
| BtsIMutI | CAGTG | 4 cut(s) | 327, 672, 1142, 1215 |
| Cac8I | GCNNGC | 1 cut(s) | 25 |
| CaiI | CAGNNNCTG | 1 cut(s) | 671 |
| CciI | TCATGA | 1 cut(s) | 883 |
| CfoI | GCGC | 2 cut(s) | 432, 597 |
| Cfr13I | GGNCC | 5 cut(s) | 152, 239, 410, 1236, 1249 |
| ClaI | ATCGAT | 1 cut(s) | 902 |
| Csp6I | GTAC | 3 cut(s) | 740, 929, 1212 |
| CviAII | CATG | 7 cut(s) | 12, 323, 344, 592, 598, 884, 1324 |
| CviQI | GTAC | 3 cut(s) | 740, 929, 1212 |
| DdeI | CTNAG | 8 cut(s) | 47, 190, 455, 488, 639, 651, 993, 1560 |
| DpnI | GATC | 2 cut(s) | 284, 1302 |
| DpnII | GATC | 2 cut(s) | 282, 1300 |
| EaeI | YGGCCR | 2 cut(s) | 831, 1389 |
| Eam1104I | CTCTTC | 3 cut(s) | 487, 492, 1068 |
| EarI | CTCTTC | 3 cut(s) | 487, 492, 1068 |
| EciI | GGCGGA | 2 cut(s) | 245, 966 |
| Ecl136II | GAGCTC | 1 cut(s) | 1552 |
| Eco130I | CCWWGG | 3 cut(s) | 828, 1272, 1386 |
| Eco24I | GRGCYC | 1 cut(s) | 1554 |
| Eco31I | GGTCTC | 1 cut(s) | 953 |
| Eco47I | GGWCC | 2 cut(s) | 410, 1249 |
| Eco53kI | GAGCTC | 1 cut(s) | 1552 |
| Eco57I | CTGAAG | 1 cut(s) | 941 |
| Eco88I | CYCGRG | 1 cut(s) | 1252 |
| Eco91I | GGTNACC | 1 cut(s) | 778 |
| EcoICRI | GAGCTC | 1 cut(s) | 1552 |
| EcoO109I | RGGNCCY | 2 cut(s) | 152, 1249 |
| EcoO65I | GGTNACC | 1 cut(s) | 778 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoRII | CCWGG | 3 cut(s) | 148, 1296, 1532 |
| EcoT14I | CCWWGG | 3 cut(s) | 828, 1272, 1386 |
| EcoT22I | ATGCAT | 1 cut(s) | 822 |
| EcoT38I | GRGCYC | 1 cut(s) | 1554 |
| ErhI | CCWWGG | 3 cut(s) | 828, 1272, 1386 |
| FaeI | CATG | 7 cut(s) | 15, 326, 347, 595, 601, 887, 1327 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1023, 1055 |
| FaqI | GGGAC | 3 cut(s) | 401, 1262, 1277 |
| FatI | CATG | 7 cut(s) | 11, 322, 343, 591, 597, 883, 1323 |
| FauI | CCCGC | 1 cut(s) | 1169 |
| FauNDI | CATATG | 1 cut(s) | 376 |
| FbaI | TGATCA | 1 cut(s) | 282 |
| Fnu4HI | GCNGC | 5 cut(s) | 360, 425, 428, 636, 1004 |
| FokI | GGATG | 4 cut(s) | 32, 993, 1118, 1411 |
| FriOI | GRGCYC | 1 cut(s) | 1554 |
| Fsp4HI | GCNGC | 5 cut(s) | 360, 425, 428, 636, 1004 |
| FspAI | RTGCGCAY | 1 cut(s) | 596 |
| FspBI | CTAG | 6 cut(s) | 24, 71, 108, 365, 1154, 1305 |
| FspI | TGCGCA | 2 cut(s) | 431, 596 |
| GlaI | GCGC | 2 cut(s) | 431, 596 |
| GluI | GCNGC | 5 cut(s) | 360, 425, 428, 636, 1004 |
| GsuI | CTGGAG | 1 cut(s) | 666 |
| HaeIII | GGCC | 5 cut(s) | 153, 240, 833, 1238, 1391 |
| HhaI | GCGC | 2 cut(s) | 432, 597 |
| Hin1II | CATG | 7 cut(s) | 15, 326, 347, 595, 601, 887, 1327 |
| Hin6I | GCGC | 2 cut(s) | 430, 595 |
| HinP1I | GCGC | 2 cut(s) | 430, 595 |
| HincII | GTYRAC | 1 cut(s) | 1404 |
| HindII | GTYRAC | 1 cut(s) | 1404 |
| HindIII | AAGCTT | 1 cut(s) | 1463 |
| HinfI | GANTC | 5 cut(s) | 747, 790, 1175, 1507, 1545 |
| HpaI | GTTAAC | 1 cut(s) | 1404 |
| HphI | GGTGA | 5 cut(s) | 197, 208, 790, 851, 1507 |
| Hpy166II | GTNNAC | 2 cut(s) | 505, 1404 |
| Hpy188I | TCNGA | 6 cut(s) | 50, 263, 303, 489, 709, 1477 |
| Hpy188III | TCNNGA | 9 cut(s) | 317, 413, 751, 794, 884, 1010, 1031, 1225, 1542 |
| Hpy8I | GTNNAC | 2 cut(s) | 505, 1404 |
| Hpy99I | CGWCG | 1 cut(s) | 970 |
| HpyAV | CCTTC | 6 cut(s) | 77, 191, 196, 212, 916, 1160 |
| HpyCH4III | ACNGT | 4 cut(s) | 209, 331, 410, 1219 |
| HpyCH4IV | ACGT | 1 cut(s) | 588 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 264, 641, 1003, 1170 |
| HpyF3I | CTNAG | 8 cut(s) | 47, 190, 455, 488, 639, 651, 993, 1560 |
| HpySE526I | ACGT | 1 cut(s) | 588 |
| Hsp92II | CATG | 7 cut(s) | 15, 326, 347, 595, 601, 887, 1327 |
| HspAI | GCGC | 2 cut(s) | 430, 595 |
| KflI | GGGWCCC | 1 cut(s) | 1249 |
| KpnI | GGTACC | 1 cut(s) | 1215 |
| Ksp22I | TGATCA | 1 cut(s) | 282 |
| KspAI | GTTAAC | 1 cut(s) | 1404 |
| Kzo9I | GATC | 2 cut(s) | 282, 1300 |
| LmnI | GCTCC | 3 cut(s) | 380, 647, 682 |
| Lsp1109I | GCAGC | 4 cut(s) | 346, 414, 647, 1015 |
| LweI | GCATC | 5 cut(s) | 10, 441, 990, 1015, 1096 |
| MaeI | CTAG | 6 cut(s) | 24, 71, 108, 365, 1154, 1305 |
| MaeII | ACGT | 1 cut(s) | 588 |
| MaeIII | GTNAC | 3 cut(s) | 317, 667, 778 |
| MalI | GATC | 2 cut(s) | 284, 1302 |
| MboI | GATC | 2 cut(s) | 282, 1300 |
| MfeI | CAATTG | 1 cut(s) | 513 |
| MflI | RGATCY | 1 cut(s) | 1300 |
| MhlI | GDGCHC | 3 cut(s) | 122, 1161, 1554 |
| MlsI | TGGCCA | 1 cut(s) | 833 |
| MluCI | AATT | 9 cut(s) | 212, 269, 513, 534, 860, 1063, 1091, 1412, 1481 |
| MluNI | TGGCCA | 1 cut(s) | 833 |
| MlyI | GAGTC | 1 cut(s) | 1501 |
| MmeI | TCCRAC | 1 cut(s) | 1550 |
| Mox20I | TGGCCA | 1 cut(s) | 833 |
| Mph1103I | ATGCAT | 1 cut(s) | 822 |
| MroXI | GAANNNNTTC | 3 cut(s) | 312, 501, 1077 |
| MscI | TGGCCA | 1 cut(s) | 833 |
| MseI | TTAA | 2 cut(s) | 620, 1403 |
| MslI | CAYNNNNRTG | 5 cut(s) | 525, 596, 776, 882, 1104 |
| Msp20I | TGGCCA | 1 cut(s) | 833 |
| MspA1I | CMGCKG | 3 cut(s) | 359, 638, 1164 |
| MspR9I | CCNGG | 3 cut(s) | 150, 1298, 1534 |
| MunI | CAATTG | 1 cut(s) | 513 |
| Mva1269I | GAATGC | 3 cut(s) | 822, 1234, 1429 |
| MvaI | CCWGG | 3 cut(s) | 150, 1298, 1534 |
| MvnI | CGCG | 1 cut(s) | 965 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 264, 641, 1003, 1170 |
| NdeI | CATATG | 1 cut(s) | 376 |
| NdeII | GATC | 2 cut(s) | 282, 1300 |
| NheI | GCTAGC | 1 cut(s) | 23 |
| NlaIII | CATG | 7 cut(s) | 15, 326, 347, 595, 601, 887, 1327 |
| NlaIV | GGNNCC | 8 cut(s) | 98, 196, 955, 1213, 1250, 1251, 1295, 1302 |
| NmeAIII | GCCGAG | 1 cut(s) | 1417 |
| NmuCI | GTSAC | 3 cut(s) | 317, 667, 778 |
| NsbI | TGCGCA | 2 cut(s) | 431, 596 |
| NsiI | ATGCAT | 1 cut(s) | 822 |
| NspI | RCATGY | 1 cut(s) | 601 |
| NspV | TTCGAA | 1 cut(s) | 658 |
| PagI | TCATGA | 1 cut(s) | 883 |
| PctI | GAATGC | 3 cut(s) | 822, 1234, 1429 |
| PdmI | GAANNNNTTC | 3 cut(s) | 312, 501, 1077 |
| PfeI | GAWTC | 4 cut(s) | 747, 790, 1175, 1545 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 173 |
| PfoI | TCCNGGA | 1 cut(s) | 1296 |
| PkrI | GCNGC | 5 cut(s) | 361, 426, 429, 637, 1005 |
| PleI | GAGTC | 1 cut(s) | 1501 |
| PpsI | GAGTC | 1 cut(s) | 1501 |
| PpuMI | RGGWCCY | 1 cut(s) | 1249 |
| Psp124BI | GAGCTC | 1 cut(s) | 1554 |
| Psp5II | RGGWCCY | 1 cut(s) | 1249 |
| Psp6I | CCWGG | 3 cut(s) | 148, 1296, 1532 |
| PspEI | GGTNACC | 1 cut(s) | 778 |
| PspGI | CCWGG | 3 cut(s) | 148, 1296, 1532 |
| PspN4I | GGNNCC | 8 cut(s) | 98, 196, 955, 1213, 1250, 1251, 1295, 1302 |
| PspPI | GGNCC | 5 cut(s) | 152, 239, 410, 1236, 1249 |
| PspPPI | RGGWCCY | 1 cut(s) | 1249 |
| PstNI | CAGNNNCTG | 1 cut(s) | 671 |
| PsuI | RGATCY | 1 cut(s) | 1300 |
| PvuII | CAGCTG | 2 cut(s) | 359, 638 |
| RsaI | GTAC | 3 cut(s) | 741, 930, 1213 |
| RsaNI | GTAC | 3 cut(s) | 740, 929, 1212 |
| RseI | CAYNNNNRTG | 5 cut(s) | 525, 596, 776, 882, 1104 |
| SacI | GAGCTC | 1 cut(s) | 1554 |
| SaqAI | TTAA | 2 cut(s) | 620, 1403 |
| SatI | GCNGC | 5 cut(s) | 360, 425, 428, 636, 1004 |
| Sau3AI | GATC | 2 cut(s) | 282, 1300 |
| Sau96I | GGNCC | 5 cut(s) | 152, 239, 410, 1236, 1249 |
| ScaI | AGTACT | 1 cut(s) | 930 |
| SchI | GAGTC | 1 cut(s) | 1501 |
| ScrFI | CCNGG | 3 cut(s) | 150, 1298, 1534 |
| SduI | GDGCHC | 3 cut(s) | 122, 1161, 1554 |
| SfaNI | GCATC | 5 cut(s) | 10, 441, 990, 1015, 1096 |
| SfcI | CTRYAG | 1 cut(s) | 156 |
| SfuI | TTCGAA | 1 cut(s) | 658 |
| SinI | GGWCC | 2 cut(s) | 410, 1249 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 525, 596, 776, 882, 1104 |
| SpeI | ACTAGT | 1 cut(s) | 364 |
| Sse9I | AATT | 9 cut(s) | 212, 269, 513, 534, 860, 1063, 1091, 1412, 1481 |
| SsiI | CCGC | 5 cut(s) | 256, 424, 951, 963, 1162 |
| SspI | AATATT | 2 cut(s) | 57, 703 |
| SspMI | CTAG | 6 cut(s) | 24, 71, 108, 365, 1154, 1305 |
| SstI | GAGCTC | 1 cut(s) | 1554 |
| StyD4I | CCNGG | 3 cut(s) | 148, 1296, 1532 |
| StyI | CCWWGG | 3 cut(s) | 828, 1272, 1386 |
| TaaI | ACNGT | 4 cut(s) | 209, 331, 410, 1219 |
| TaiI | ACGT | 1 cut(s) | 591 |
| TaqI | TCGA | 8 cut(s) | 572, 658, 750, 902, 1129, 1317, 1541, 1548 |
| TaqII | GACCGA | 1 cut(s) | 797 |
| TasI | AATT | 9 cut(s) | 212, 269, 513, 534, 860, 1063, 1091, 1412, 1481 |
| TatI | WGTACW | 2 cut(s) | 739, 928 |
| TauI | GCSGC | 1 cut(s) | 427 |
| TfiI | GAWTC | 4 cut(s) | 747, 790, 1175, 1545 |
| Tru1I | TTAA | 2 cut(s) | 620, 1403 |
| Tru9I | TTAA | 2 cut(s) | 620, 1403 |
| TscAI | CASTG | 4 cut(s) | 334, 672, 1149, 1222 |
| TseFI | GTSAC | 3 cut(s) | 317, 667, 778 |
| TseI | GCWGC | 4 cut(s) | 359, 427, 635, 1003 |
| Tsp45I | GTSAC | 3 cut(s) | 317, 667, 778 |
| TspDTI | ATGAA | 5 cut(s) | 54, 900, 1034, 1070, 1410 |
| TspGWI | ACGGA | 1 cut(s) | 950 |
| TspRI | CASTG | 4 cut(s) | 334, 672, 1149, 1222 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 173 |
| VpaK11BI | GGWCC | 2 cut(s) | 410, 1249 |
| XapI | RAATTY | 2 cut(s) | 212, 1481 |
| XceI | RCATGY | 1 cut(s) | 601 |
| XmnI | GAANNNNTTC | 3 cut(s) | 312, 501, 1077 |
| XspI | CTAG | 6 cut(s) | 24, 71, 108, 365, 1154, 1305 |
| ZrmI | AGTACT | 1 cut(s) | 930 |
| Zsp2I | ATGCAT | 1 cut(s) | 822 |