Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Forward (+)

45842723 .. 45844569

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0360100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTGCCATGGTGGTTGACGTCTGAGCAAGACCTTCGCCGCCGCCGAAAGAAGAACCAAATGGATTTATTTTCTGAGATTTTGGGTATGACGATGCATGAAGACTCGTGCTTGATCAGGATCTCAATGGGGAACTATCAAAAGCAAAGCAAAGCTATGTCCGATGTTCTCGGTCAATTCTCAGGGAAGAAGCCCGTAGGGCTGGATTGCACCAGCTGGCTTTTTGTGGTTCGTGAGGTACTGAGATTTGACCTTTATGGGAAAGACTACTTCATTGTCATGAATGCTTCAGAGATCACTGACAAACTTGGTCTCCACACTTTCGTCAACGCCAATGGTGATATTGGGGAAGAATGGTGTGGTGAATGTTTTGGAATTGGGTCCTCTCTCAAGACTTTGAGAAGGAAGGATTTGAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

140

Amino Acids

16.19

Weight (kDa)

7.65

Isoelectric Point (pI)

63.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	23
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	2 cut(s)	40, 43
AclWI	GGATC	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	415
AluBI	AGCT	2 cut(s)	155, 216
AluI	AGCT	2 cut(s)	155, 216
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	381
AsuHPI	GGTGA	2 cut(s)	350, 374
AvaII	GGWCC	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	108
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	199
BisI	GCNGC	2 cut(s)	40, 43
BlsI	GCNGC	2 cut(s)	41, 44
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	2 cut(s)	6, 382
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	374
BsaBI	GATNNNNATC	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bse8I	GATNNNNATC	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	8
BseJI	GATNNNNATC	1 cut(s)	119
BseMII	CTCAG	4 cut(s)	15, 66, 195, 233
BshNI	GGYRCC	1 cut(s)	4
BsmAI	GTCTC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	317
Bsp143I	GATC	3 cut(s)	114, 120, 294
Bsp19I	CCATGG	1 cut(s)	8
BspACI	CCGC	2 cut(s)	40, 43
BspCNI	CTCAG	4 cut(s)	16, 67, 194, 234
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	6, 382
BspPI	GGATC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	3 cut(s)	114, 120, 294
BssNI	GRCGYC	1 cut(s)	20
BssSI	CACGAG	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	106
BstACI	GRCGYC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	4 cut(s)	24, 75, 181, 242
BstDSI	CCRYGG	1 cut(s)	8
BstKTI	GATC	3 cut(s)	117, 123, 297
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	3 cut(s)	114, 120, 294
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	8
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	218
CciI	TCATGA	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	3 cut(s)	9, 98, 280
CviJI	RGCY	5 cut(s)	155, 193, 202, 216, 220
CviKI_1	RGCY	5 cut(s)	155, 193, 202, 216, 220
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	4 cut(s)	24, 75, 181, 242
DpnI	GATC	3 cut(s)	116, 122, 296
DpnII	GATC	3 cut(s)	114, 120, 294
Eco130I	CCWWGG	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	8
EcoT22I	ATGCAT	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	3 cut(s)	12, 101, 283
FaiI	YATR	6 cut(s)	10, 89, 99, 158, 258, 281
FatI	CATG	3 cut(s)	8, 97, 279
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	2 cut(s)	40, 43
Fsp4HI	GCNGC	2 cut(s)	40, 43
GluI	GCNGC	2 cut(s)	40, 43
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	3 cut(s)	12, 101, 283
HincII	GTYRAC	2 cut(s)	18, 328
HindII	GTYRAC	2 cut(s)	18, 328
HinfI	GANTC	1 cut(s)	104
HphI	GGTGA	2 cut(s)	350, 374
Hpy166II	GTNNAC	2 cut(s)	18, 328
Hpy188I	TCNGA	4 cut(s)	25, 76, 163, 292
Hpy188III	TCNNGA	4 cut(s)	118, 233, 280, 391
Hpy8I	GTNNAC	2 cut(s)	18, 328
HpyAV	CCTTC	3 cut(s)	44, 396, 400
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	2 cut(s)	97, 210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	4 cut(s)	24, 75, 181, 242
HpySE526I	ACGT	1 cut(s)	20
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	12, 101, 283
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	3 cut(s)	114, 120, 294
LpnPI	CCDG	5 cut(s)	103, 168, 188, 202, 226
LweI	GCATC	1 cut(s)	84
MaeII	ACGT	1 cut(s)	20
MalI	GATC	3 cut(s)	116, 122, 296
MboI	GATC	3 cut(s)	114, 120, 294
MboII	GAAGA	4 cut(s)	64, 113, 199, 362
MflI	RGATCY	1 cut(s)	120
MluCI	AATT	3 cut(s)	176, 375, 415
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	2 cut(s)	229, 394
Mph1103I	ATGCAT	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	8
NdeII	GATC	3 cut(s)	114, 120, 294
NlaIII	CATG	3 cut(s)	12, 101, 283
NlaIV	GGNNCC	2 cut(s)	6, 382
NsiI	ATGCAT	1 cut(s)	99
PagI	TCATGA	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PctI	GAATGC	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	41, 44
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PpuMI	RGGWCCY	1 cut(s)	381
Psp5II	RGGWCCY	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	6, 382
PspPI	GGNCC	1 cut(s)	381
PspPPI	RGGWCCY	1 cut(s)	381
PsuI	RGATCY	1 cut(s)	120
PvuII	CAGCTG	1 cut(s)	216
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	278
SatI	GCNGC	2 cut(s)	40, 43
Sau3AI	GATC	3 cut(s)	114, 120, 294
Sau96I	GGNCC	1 cut(s)	381
SchI	GAGTC	1 cut(s)	98
SetI	ASST	6 cut(s)	23, 36, 157, 218, 240, 255
SfaNI	GCATC	1 cut(s)	84
SinI	GGWCC	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	3 cut(s)	176, 375, 415
SsiI	CCGC	2 cut(s)	40, 43
StyI	CCWWGG	1 cut(s)	8
TaiI	ACGT	1 cut(s)	23
TaqII	GACCGA	1 cut(s)	161
TasI	AATT	3 cut(s)	176, 375, 415
TauI	GCSGC	2 cut(s)	42, 45
TscAI	CASTG	1 cut(s)	304
TspDTI	ATGAA	3 cut(s)	114, 262, 296
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	381
ZraI	GACGTC	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.