Rorug05G0274000

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
30946031 .. 30946996
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0274000.1

Sequence Viewer

Length: 966 bp
ATGGAGAATGGTGGTTATGATGGTCTATTGCTTCTTCCAGGCCAAAGGTTTTGCCCTATGGAAGATGAACTACTCATGTTCTACCTTAAACCCAAGGTGAACGGCAAGGAGGTGCCTGGAAAAGACGACCTTATCTGCGAGTTAGATCTTTACGGTGACCAAGACCCTTGGAAGATATGGGAAAGATTTGAAGCAAGAAGGGCAAACGACTTGAGGAAGAACAAGGATCTTTACTTCTTCACCCAAAAGAAGAAGAAGACAGCCAGAGGCTCGCGTATAAGTCGAACCGTCGGGAGTGGAGGTACTTGGAAAGGGCAGAACGCAGCCAAAGAGATATATCTTCTTGATCAGAATCAGCAGCCAACAACTACTATTCTTGGTTTCAAGAAAACCTACACCTATAAGAACAAGGGCTCTGTGCATGACGGTCGCTGGATCATGTACGAGTACGAACTTGATGAGTCGCAACTCGTACACAAGAAACAAGTAAACAAGAAAGACTATGTTCTTTGTTTACTTAGGAAAAACGATGAACAACCTGAAAAGAAAAGAAGAAGGCAAGAAGAAGAGGAGATGCTGGGAGACTCTAACCAGGACGATGATGGAAATTATAATTTGAACATTAAGGAGCCGCAAGCGAAGAGGCAATGCCTTCTACCATGCGCTGGTAATGTTGCAACACCATCATTTGACTTTGCTGAAGCAGAAAAATGGTTTGACCAACAATTATCGCAACCAGCACTATTAGAACCTGTACAAGAATCAGGACCAACACCGTTAGAAGCTGAACCGTGGCCAGTTGCATTGCAAGTGGATGAGAATATGGAACTCGAGCATTTCGGGGTTGATCAAGGAGCACAGTCATTGGAGTTGGCTGAACTAGAAAAGTGGTTTAAAGATGAATTTGAAGCTCAGCCTCAACTAGGAGAAGAAAATCTTGAGCAGCAACTTGCAGTGATGATATGA

Protein Analysis

321

Amino Acids

37.19

Weight (kDa)

4.89

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 13 - 152 1.7e-26 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 612
AccB1I GGYRCC 1 cut(s) 112
AccB7I CCANNNNNTGG 1 cut(s) 665
AccII CGCG 1 cut(s) 274
AciI CCGC 1 cut(s) 632
AclWI GGATC 2 cut(s) 234, 443
AcoI YGGCCR 1 cut(s) 794
AcsI RAATTY 1 cut(s) 902
AcuI CTGAAG 1 cut(s) 720
AfaI GTAC 5 cut(s) 304, 443, 449, 474, 756
AfiI CCNNNNNNNGG 2 cut(s) 665, 923
AgsI TTSAA 4 cut(s) 191, 385, 619, 908
AjnI CCWGG 3 cut(s) 37, 115, 591
AluBI AGCT 2 cut(s) 785, 911
AluI AGCT 2 cut(s) 785, 911
Alw21I GWGCWC 1 cut(s) 859
Alw26I GTCTC 1 cut(s) 576
AlwI GGATC 2 cut(s) 234, 443
Ama87I CYCGRG 1 cut(s) 830
AoxI GGCC 2 cut(s) 40, 794
ApeKI GCWGC 3 cut(s) 323, 358, 943
ApoI RAATTY 1 cut(s) 902
AspLEI GCGC 1 cut(s) 665
AspS9I GGNCC 1 cut(s) 767
AsuHPI GGTGA 3 cut(s) 109, 167, 232
AvaI CYCGRG 1 cut(s) 830
AvaII GGWCC 1 cut(s) 767
BalI TGGCCA 1 cut(s) 796
BanI GGYRCC 1 cut(s) 112
BanII GRGCYC 1 cut(s) 416
BarI GAAGNNNNNNTAC 2 cut(s) 54, 86
BbsI GAAGAC 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 859
BbvI GCAGC 3 cut(s) 335, 370, 955
BccI CCATC 3 cut(s) 14, 596, 691
BceAI ACGGC 1 cut(s) 118
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 3 cut(s) 39, 117, 593
BclI TGATCA 2 cut(s) 346, 847
BcoDI GTCTC 1 cut(s) 576
BfaI CTAG 2 cut(s) 881, 923
BglII AGATCT 1 cut(s) 145
BisI GCNGC 4 cut(s) 324, 359, 632, 944
BlpI GCTNAGC 1 cut(s) 912
BlsI GCNGC 4 cut(s) 325, 360, 633, 945
Bme1390I CCNGG 3 cut(s) 39, 117, 593
Bme18I GGWCC 1 cut(s) 767
BmeT110I CYCGRG 1 cut(s) 830
BmgT120I GGNCC 1 cut(s) 767
BmiI GGNNCC 2 cut(s) 114, 630
BmrFI CCNGG 3 cut(s) 39, 117, 593
BmsI GCATC 1 cut(s) 564
BpiI GAAGAC 1 cut(s) 263
Bpu1102I GCTNAGC 1 cut(s) 912
BpuEI CTTGAG 2 cut(s) 232, 959
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 3 cut(s) 93, 167, 791
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 2 cut(s) 665, 923
Bse1I ACTGG 1 cut(s) 797
Bse3DI GCAATG 2 cut(s) 653, 803
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 3 cut(s) 39, 117, 593
BseDI CCNNGG 3 cut(s) 93, 167, 791
BseGI GGATG 1 cut(s) 820
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 2 cut(s) 665, 923
BseMI GCAATG 2 cut(s) 653, 803
BseMII CTCAG 1 cut(s) 926
BseNI ACTGG 1 cut(s) 797
BseRI GAGGAG 1 cut(s) 584
BseXI GCAGC 3 cut(s) 335, 370, 955
BseYI CCCAGC 1 cut(s) 577
Bsh1236I CGCG 1 cut(s) 274
Bsh1285I CGRYCG 1 cut(s) 430
BshFI GGCC 2 cut(s) 42, 796
BshNI GGYRCC 1 cut(s) 112
BsiEI CGRYCG 1 cut(s) 430
BsiHKAI GWGCWC 1 cut(s) 859
BsiHKCI CYCGRG 1 cut(s) 830
BslI CCNNNNNNNGG 2 cut(s) 665, 923
BsmAI GTCTC 1 cut(s) 576
BsnI GGCC 2 cut(s) 42, 796
BsoBI CYCGRG 1 cut(s) 830
Bsp1286I GDGCHC 2 cut(s) 416, 859
Bsp1407I TGTACA 1 cut(s) 754
Bsp143I GATC 5 cut(s) 145, 226, 346, 435, 847
Bsp1720I GCTNAGC 1 cut(s) 912
BspACI CCGC 1 cut(s) 632
BspANI GGCC 2 cut(s) 42, 796
BspCNI CTCAG 1 cut(s) 925
BspFNI CGCG 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 114, 630
BspPI GGATC 2 cut(s) 234, 443
BspT107I GGYRCC 1 cut(s) 112
BsrDI GCAATG 2 cut(s) 653, 803
BsrGI TGTACA 1 cut(s) 754
BsrI ACTGG 1 cut(s) 797
BssECI CCNNGG 3 cut(s) 93, 167, 791
BssMI GATC 5 cut(s) 145, 226, 346, 435, 847
BssT1I CCWWGG 2 cut(s) 93, 167
Bst2UI CCWGG 3 cut(s) 39, 117, 593
Bst4CI ACNGT 6 cut(s) 155, 289, 428, 777, 792, 861
Bst6I CTCTTC 2 cut(s) 561, 635
BstAUI TGTACA 1 cut(s) 754
BstC8I GCNNGC 2 cut(s) 272, 636
BstDEI CTNAG 2 cut(s) 518, 912
BstDSI CCRYGG 1 cut(s) 791
BstEII GGTNACC 1 cut(s) 155
BstENI CCTNNNNNAGG 1 cut(s) 921
BstF5I GGATG 1 cut(s) 820
BstFNI CGCG 1 cut(s) 274
BstHHI GCGC 1 cut(s) 665
BstKTI GATC 5 cut(s) 148, 229, 349, 438, 850
BstMAI GTCTC 1 cut(s) 576
BstMBI GATC 5 cut(s) 145, 226, 346, 435, 847
BstMCI CGRYCG 1 cut(s) 430
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 3 cut(s) 39, 117, 593
BstPI GGTNACC 1 cut(s) 155
BstSCI CCNGG 3 cut(s) 37, 115, 591
BstUI CGCG 1 cut(s) 274
BstV1I GCAGC 3 cut(s) 335, 370, 955
BstV2I GAAGAC 1 cut(s) 263
BstX2I RGATCY 2 cut(s) 145, 226
BstYI RGATCY 2 cut(s) 145, 226
BsuRI GGCC 2 cut(s) 42, 796
BtgI CCRYGG 1 cut(s) 791
BtsCI GGATG 1 cut(s) 820
BtsI GCAGTG 1 cut(s) 960
BtsIMutI CAGTG 1 cut(s) 960
Cac8I GCNNGC 2 cut(s) 272, 636
CfoI GCGC 1 cut(s) 665
Cfr13I GGNCC 1 cut(s) 767
Csp6I GTAC 5 cut(s) 303, 442, 448, 473, 755
CviAII CATG 4 cut(s) 76, 422, 439, 660
CviQI GTAC 5 cut(s) 303, 442, 448, 473, 755
DdeI CTNAG 2 cut(s) 518, 912
DpnI GATC 5 cut(s) 147, 228, 348, 437, 849
DpnII GATC 5 cut(s) 145, 226, 346, 435, 847
DraI TTTAAA 1 cut(s) 895
EaeI YGGCCR 1 cut(s) 794
Eam1104I CTCTTC 2 cut(s) 561, 635
EarI CTCTTC 2 cut(s) 561, 635
Eco130I CCWWGG 2 cut(s) 93, 167
Eco24I GRGCYC 1 cut(s) 416
Eco47I GGWCC 1 cut(s) 767
Eco57I CTGAAG 1 cut(s) 720
Eco88I CYCGRG 1 cut(s) 830
Eco91I GGTNACC 1 cut(s) 155
EcoNI CCTNNNNNAGG 1 cut(s) 921
EcoO65I GGTNACC 1 cut(s) 155
EcoRII CCWGG 3 cut(s) 37, 115, 591
EcoT14I CCWWGG 2 cut(s) 93, 167
EcoT38I GRGCYC 1 cut(s) 416
ErhI CCWWGG 2 cut(s) 93, 167
FaeI CATG 4 cut(s) 79, 425, 442, 663
FalI AAGNNNNNCTT 4 cut(s) 114, 146, 921, 953
FatI CATG 4 cut(s) 75, 421, 438, 659
FbaI TGATCA 2 cut(s) 346, 847
Fnu4HI GCNGC 4 cut(s) 324, 359, 632, 944
FokI GGATG 1 cut(s) 827
FriOI GRGCYC 1 cut(s) 416
Fsp4HI GCNGC 4 cut(s) 324, 359, 632, 944
FspBI CTAG 2 cut(s) 881, 923
GlaI GCGC 1 cut(s) 664
GluI GCNGC 4 cut(s) 324, 359, 632, 944
GsaI CCCAGC 1 cut(s) 581
HaeIII GGCC 2 cut(s) 42, 796
HhaI GCGC 1 cut(s) 665
Hin1II CATG 4 cut(s) 79, 425, 442, 663
Hin6I GCGC 1 cut(s) 663
HinP1I GCGC 1 cut(s) 663
HinfI GANTC 4 cut(s) 352, 461, 584, 761
HphI GGTGA 3 cut(s) 109, 167, 232
Hpy166II GTNNAC 4 cut(s) 100, 475, 490, 515
Hpy188I TCNGA 1 cut(s) 351
Hpy188III TCNNGA 5 cut(s) 292, 344, 385, 765, 938
Hpy8I GTNNAC 4 cut(s) 100, 475, 490, 515
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 3 cut(s) 192, 549, 662
HpyCH4III ACNGT 6 cut(s) 155, 289, 428, 777, 792, 861
HpyCH4V TGCA 5 cut(s) 421, 677, 803, 808, 953
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 2 cut(s) 518, 912
Hsp92II CATG 4 cut(s) 79, 425, 442, 663
HspAI GCGC 1 cut(s) 663
Ksp22I TGATCA 2 cut(s) 346, 847
Kzo9I GATC 5 cut(s) 145, 226, 346, 435, 847
LmnI GCTCC 2 cut(s) 628, 854
Lsp1109I GCAGC 3 cut(s) 335, 370, 955
LweI GCATC 1 cut(s) 564
MaeI CTAG 2 cut(s) 881, 923
MaeIII GTNAC 1 cut(s) 155
MalI GATC 5 cut(s) 147, 228, 348, 437, 849
MboI GATC 5 cut(s) 145, 226, 346, 435, 847
MflI RGATCY 2 cut(s) 145, 226
MhlI GDGCHC 2 cut(s) 416, 859
MlsI TGGCCA 1 cut(s) 796
MluCI AATT 4 cut(s) 607, 613, 725, 902
MluNI TGGCCA 1 cut(s) 796
MlyI GAGTC 2 cut(s) 470, 578
MnlI CCTC 7 cut(s) 103, 207, 260, 293, 562, 636, 927
Mox20I TGGCCA 1 cut(s) 796
MscI TGGCCA 1 cut(s) 796
MseI TTAA 3 cut(s) 87, 624, 894
Msp20I TGGCCA 1 cut(s) 796
MspR9I CCNGG 3 cut(s) 39, 117, 593
MvaI CCWGG 3 cut(s) 39, 117, 593
MvnI CGCG 1 cut(s) 274
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 5 cut(s) 145, 226, 346, 435, 847
NlaIII CATG 4 cut(s) 79, 425, 442, 663
NlaIV GGNNCC 2 cut(s) 114, 630
NmuCI GTSAC 1 cut(s) 155
PaeR7I CTCGAG 1 cut(s) 830
PfeI GAWTC 2 cut(s) 352, 761
PflMI CCANNNNNTGG 1 cut(s) 665
PkrI GCNGC 4 cut(s) 325, 360, 633, 945
PleI GAGTC 2 cut(s) 469, 578
PpsI GAGTC 2 cut(s) 469, 578
PsiI TTATAA 1 cut(s) 612
Psp6I CCWGG 3 cut(s) 37, 115, 591
PspEI GGTNACC 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 577
PspGI CCWGG 3 cut(s) 37, 115, 591
PspN4I GGNNCC 2 cut(s) 114, 630
PspPI GGNCC 1 cut(s) 767
PspXI VCTCGAGB 1 cut(s) 830
PsuI RGATCY 2 cut(s) 145, 226
RsaI GTAC 5 cut(s) 304, 443, 449, 474, 756
RsaNI GTAC 5 cut(s) 303, 442, 448, 473, 755
SaqAI TTAA 3 cut(s) 87, 624, 894
SatI GCNGC 4 cut(s) 324, 359, 632, 944
Sau3AI GATC 5 cut(s) 145, 226, 346, 435, 847
Sau96I GGNCC 1 cut(s) 767
SchI GAGTC 2 cut(s) 470, 578
ScrFI CCNGG 3 cut(s) 39, 117, 593
SduI GDGCHC 2 cut(s) 416, 859
SfaNI GCATC 1 cut(s) 564
Sfr274I CTCGAG 1 cut(s) 830
SinI GGWCC 1 cut(s) 767
SlaI CTCGAG 1 cut(s) 830
SmlI CTYRAG 3 cut(s) 211, 830, 938
SmoI CTYRAG 3 cut(s) 211, 830, 938
Sse9I AATT 4 cut(s) 607, 613, 725, 902
SsiI CCGC 1 cut(s) 632
SspMI CTAG 2 cut(s) 881, 923
StyD4I CCNGG 3 cut(s) 37, 115, 591
StyI CCWWGG 2 cut(s) 93, 167
TaaI ACNGT 6 cut(s) 155, 289, 428, 777, 792, 861
TaqI TCGA 2 cut(s) 283, 831
TasI AATT 4 cut(s) 607, 613, 725, 902
TatI WGTACW 1 cut(s) 754
TauI GCSGC 1 cut(s) 634
TfiI GAWTC 2 cut(s) 352, 761
Tru1I TTAA 3 cut(s) 87, 624, 894
Tru9I TTAA 3 cut(s) 87, 624, 894
TscAI CASTG 1 cut(s) 960
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 3 cut(s) 323, 358, 943
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 3 cut(s) 81, 546, 915
TspRI CASTG 1 cut(s) 960
Van91I CCANNNNNTGG 1 cut(s) 665
VpaK11BI GGWCC 1 cut(s) 767
XagI CCTNNNNNAGG 1 cut(s) 921
XapI RAATTY 1 cut(s) 902
XcmI CCANNNNNNNNNTGG 1 cut(s) 599
XhoI CTCGAG 1 cut(s) 830
XspI CTAG 2 cut(s) 881, 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.