Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 228 - 272 | 4e-10 | PPR repeat family |
| PPR_2 | PF13041 | 333 - 381 | 6.2e-06 | PPR repeat family |
| PPR | PF01535 | 335 - 362 | 1e-05 | PPR repeat |
| PPR_2 | PF13041 | 670 - 717 | 9.9e-08 | PPR repeat family |
| PPR | PF01535 | 672 - 702 | 5.1e-07 | PPR repeat |
| E_motif | PF20431 | 788 - 849 | 3.5e-15 | E motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1980 |
| AarI | CACCTGC | 1 cut(s) | 1878 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 686 |
| Acc36I | ACCTGC | 2 cut(s) | 1334, 1878 |
| AccB1I | GGYRCC | 1 cut(s) | 1961 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2328 |
| AccI | GTMKAC | 3 cut(s) | 58, 1214, 2021 |
| AccIII | TCCGGA | 1 cut(s) | 233 |
| AciI | CCGC | 4 cut(s) | 965, 1959, 2201, 2576 |
| AclWI | GGATC | 4 cut(s) | 1168, 1419, 2016, 2256 |
| AcsI | RAATTY | 4 cut(s) | 10, 82, 229, 604 |
| AcuI | CTGAAG | 2 cut(s) | 1785, 2198 |
| AfaI | GTAC | 6 cut(s) | 43, 425, 1184, 2560, 2617, 2626 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1535, 2005, 2328, 2386 |
| AflIII | ACRYGT | 1 cut(s) | 61 |
| AgsI | TTSAA | 8 cut(s) | 1054, 1494, 1591, 1635, 2312, 2405, 2411, 2518 |
| AjnI | CCWGG | 1 cut(s) | 180 |
| AleI | CACNNNNGTG | 1 cut(s) | 563 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 959, 991 |
| Alw21I | GWGCWC | 4 cut(s) | 523, 558, 1144, 1936 |
| Alw26I | GTCTC | 4 cut(s) | 295, 1274, 2505, 2574 |
| Alw44I | GTGCAC | 2 cut(s) | 554, 1140 |
| AlwI | GGATC | 4 cut(s) | 1168, 1419, 2016, 2256 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 377, 1109 |
| Aor13HI | TCCGGA | 1 cut(s) | 233 |
| AoxI | GGCC | 3 cut(s) | 1100, 2158, 2377 |
| ApaLI | GTGCAC | 2 cut(s) | 554, 1140 |
| ApeKI | GCWGC | 5 cut(s) | 50, 191, 212, 899, 1387 |
| ApoI | RAATTY | 4 cut(s) | 10, 82, 229, 604 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 145, 177 |
| AspA2I | CCTAGG | 1 cut(s) | 1199 |
| AspS9I | GGNCC | 6 cut(s) | 776, 784, 1100, 1732, 2377, 2632 |
| AsuHPI | GGTGA | 5 cut(s) | 60, 281, 1055, 1909, 2449 |
| AvaII | GGWCC | 4 cut(s) | 776, 784, 1732, 2632 |
| AvrII | CCTAGG | 1 cut(s) | 1199 |
| BaeGI | GKGCMC | 2 cut(s) | 558, 1144 |
| BanI | GGYRCC | 1 cut(s) | 1961 |
| BanII | GRGCYC | 1 cut(s) | 1936 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1389, 1421 |
| BbsI | GAAGAC | 1 cut(s) | 2071 |
| Bbv12I | GWGCWC | 4 cut(s) | 523, 558, 1144, 1936 |
| BbvCI | CCTCAGC | 1 cut(s) | 1874 |
| BbvI | GCAGC | 5 cut(s) | 37, 199, 203, 911, 1374 |
| BccI | CCATC | 3 cut(s) | 1090, 1430, 2463 |
| BceAI | ACGGC | 1 cut(s) | 2364 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 283, 317 |
| BciT130I | CCWGG | 1 cut(s) | 182 |
| BcoDI | GTCTC | 4 cut(s) | 295, 1274, 2505, 2574 |
| BfaI | CTAG | 6 cut(s) | 638, 896, 1200, 1299, 1331, 2466 |
| BfmI | CTRYAG | 2 cut(s) | 1215, 1449 |
| BfuAI | ACCTGC | 2 cut(s) | 1334, 1878 |
| BglII | AGATCT | 2 cut(s) | 1593, 2181 |
| BisI | GCNGC | 5 cut(s) | 51, 192, 213, 900, 1388 |
| BlnI | CCTAGG | 1 cut(s) | 1199 |
| BlpI | GCTNAGC | 1 cut(s) | 477 |
| BlsI | GCNGC | 5 cut(s) | 52, 193, 214, 901, 1389 |
| Bme1390I | CCNGG | 1 cut(s) | 182 |
| Bme18I | GGWCC | 4 cut(s) | 776, 784, 1732, 2632 |
| BmgT120I | GGNCC | 6 cut(s) | 776, 784, 1100, 1732, 2377, 2632 |
| BmiI | GGNNCC | 3 cut(s) | 786, 1101, 1963 |
| BmrFI | CCNGG | 1 cut(s) | 182 |
| BmrI | ACTGGG | 1 cut(s) | 66 |
| BmuI | ACTGGG | 1 cut(s) | 66 |
| BoxI | GACNNNNGTC | 1 cut(s) | 64 |
| BpiI | GAAGAC | 1 cut(s) | 2071 |
| Bpu10I | CCTNAGC | 2 cut(s) | 526, 1874 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 477 |
| BpuEI | CTTGAG | 2 cut(s) | 1782, 2114 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1033 |
| BsaJI | CCNNGG | 5 cut(s) | 1177, 1199, 1233, 2223, 2254 |
| BsaWI | WCCGGW | 2 cut(s) | 233, 1408 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1535, 2005, 2328, 2386 |
| Bse1I | ACTGG | 3 cut(s) | 72, 854, 2651 |
| Bse3DI | GCAATG | 6 cut(s) | 495, 711, 801, 925, 1824, 2336 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1033 |
| BseAI | TCCGGA | 1 cut(s) | 233 |
| BseBI | CCWGG | 1 cut(s) | 182 |
| BseDI | CCNNGG | 5 cut(s) | 1177, 1199, 1233, 2223, 2254 |
| BseGI | GGATG | 6 cut(s) | 340, 771, 990, 1195, 1522, 2537 |
| BseJI | GATNNNNATC | 1 cut(s) | 1033 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1535, 2005, 2328, 2386 |
| BseMI | GCAATG | 6 cut(s) | 495, 711, 801, 925, 1824, 2336 |
| BseMII | CTCAG | 5 cut(s) | 384, 714, 1515, 1865, 1875 |
| BseNI | ACTGG | 3 cut(s) | 72, 854, 2651 |
| BseRI | GAGGAG | 1 cut(s) | 2569 |
| BseSI | GKGCMC | 2 cut(s) | 558, 1144 |
| BseXI | GCAGC | 5 cut(s) | 37, 199, 203, 911, 1374 |
| BseYI | CCCAGC | 2 cut(s) | 1502, 2341 |
| BshFI | GGCC | 3 cut(s) | 1102, 2160, 2379 |
| BshNI | GGYRCC | 1 cut(s) | 1961 |
| BsiHKAI | GWGCWC | 4 cut(s) | 523, 558, 1144, 1936 |
| BsiSI | CCGG | 3 cut(s) | 234, 886, 1409 |
| BslFI | GGGAC | 2 cut(s) | 2347, 2572 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1535, 2005, 2328, 2386 |
| BsmAI | GTCTC | 4 cut(s) | 295, 1274, 2505, 2574 |
| BsmFI | GGGAC | 2 cut(s) | 2347, 2572 |
| BsmI | GAATGC | 4 cut(s) | 706, 1018, 1125, 1586 |
| BsnI | GGCC | 3 cut(s) | 1102, 2160, 2379 |
| Bsp1286I | GDGCHC | 4 cut(s) | 523, 558, 1144, 1936 |
| Bsp13I | TCCGGA | 1 cut(s) | 233 |
| Bsp143I | GATC | 9 cut(s) | 271, 1173, 1411, 1593, 1708, 2008, 2181, 2248, 2392 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 477 |
| Bsp19I | CCATGG | 2 cut(s) | 1177, 1233 |
| BspACI | CCGC | 4 cut(s) | 965, 1959, 2201, 2576 |
| BspANI | GGCC | 3 cut(s) | 1102, 2160, 2379 |
| BspCNI | CTCAG | 5 cut(s) | 383, 715, 1516, 1866, 1874 |
| BspEI | TCCGGA | 1 cut(s) | 233 |
| BspHI | TCATGA | 2 cut(s) | 451, 1912 |
| BspLI | GGNNCC | 3 cut(s) | 786, 1101, 1963 |
| BspMAI | CTGCAG | 1 cut(s) | 1453 |
| BspMI | ACCTGC | 2 cut(s) | 1334, 1878 |
| BspPI | GGATC | 4 cut(s) | 1168, 1419, 2016, 2256 |
| BspT107I | GGYRCC | 1 cut(s) | 1961 |
| BsrDI | GCAATG | 6 cut(s) | 495, 711, 801, 925, 1824, 2336 |
| BsrI | ACTGG | 3 cut(s) | 72, 854, 2651 |
| BssECI | CCNNGG | 5 cut(s) | 1177, 1199, 1233, 2223, 2254 |
| BssMI | GATC | 9 cut(s) | 271, 1173, 1411, 1593, 1708, 2008, 2181, 2248, 2392 |
| BssNAI | GTATAC | 1 cut(s) | 2022 |
| BssT1I | CCWWGG | 4 cut(s) | 1177, 1199, 1233, 2254 |
| Bst1107I | GTATAC | 1 cut(s) | 2022 |
| Bst2UI | CCWGG | 1 cut(s) | 182 |
| Bst4CI | ACNGT | 7 cut(s) | 505, 661, 1694, 2224, 2232, 2567, 2615 |
| Bst6I | CTCTTC | 2 cut(s) | 138, 542 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 710, 803, 1022 |
| BstC8I | GCNNGC | 6 cut(s) | 523, 1134, 2000, 2146, 2158, 2526 |
| BstDEI | CTNAG | 9 cut(s) | 5, 220, 370, 477, 526, 723, 1524, 1861, 1874 |
| BstDSI | CCRYGG | 3 cut(s) | 1177, 1233, 2223 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2003 |
| BstF5I | GGATG | 6 cut(s) | 340, 771, 990, 1195, 1522, 2537 |
| BstKTI | GATC | 9 cut(s) | 274, 1176, 1414, 1596, 1711, 2011, 2184, 2251, 2395 |
| BstMAI | GTCTC | 4 cut(s) | 295, 1274, 2505, 2574 |
| BstMBI | GATC | 9 cut(s) | 271, 1173, 1411, 1593, 1708, 2008, 2181, 2248, 2392 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 221, 710, 803, 1022, 2462 |
| BstNI | CCWGG | 1 cut(s) | 182 |
| BstNSI | RCATGY | 4 cut(s) | 65, 464, 1163, 1629 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 64 |
| BstSCI | CCNGG | 1 cut(s) | 180 |
| BstSFI | CTRYAG | 2 cut(s) | 1215, 1449 |
| BstSLI | GKGCMC | 2 cut(s) | 558, 1144 |
| BstV1I | GCAGC | 5 cut(s) | 37, 199, 203, 911, 1374 |
| BstV2I | GAAGAC | 1 cut(s) | 2071 |
| BstX2I | RGATCY | 5 cut(s) | 1173, 1593, 2008, 2181, 2248 |
| BstYI | RGATCY | 5 cut(s) | 1173, 1593, 2008, 2181, 2248 |
| BstZ17I | GTATAC | 1 cut(s) | 2022 |
| BsuRI | GGCC | 3 cut(s) | 1102, 2160, 2379 |
| BtgI | CCRYGG | 3 cut(s) | 1177, 1233, 2223 |
| BtsCI | GGATG | 6 cut(s) | 340, 771, 990, 1195, 1522, 2537 |
| BtsI | GCAGTG | 2 cut(s) | 299, 1886 |
| BtsIMutI | CAGTG | 2 cut(s) | 299, 1886 |
| BveI | ACCTGC | 2 cut(s) | 1334, 1878 |
| Cac8I | GCNNGC | 6 cut(s) | 523, 1134, 2000, 2146, 2158, 2526 |
| CaiI | CAGNNNCTG | 2 cut(s) | 377, 1109 |
| CciI | TCATGA | 2 cut(s) | 451, 1912 |
| Cfr13I | GGNCC | 6 cut(s) | 776, 784, 1100, 1732, 2377, 2632 |
| CsiI | ACCWGGT | 1 cut(s) | 180 |
| Csp6I | GTAC | 6 cut(s) | 42, 424, 1183, 2559, 2616, 2625 |
| CviQI | GTAC | 6 cut(s) | 42, 424, 1183, 2559, 2616, 2625 |
| DdeI | CTNAG | 9 cut(s) | 5, 220, 370, 477, 526, 723, 1524, 1861, 1874 |
| DpnI | GATC | 9 cut(s) | 273, 1175, 1413, 1595, 1710, 2010, 2183, 2250, 2394 |
| DpnII | GATC | 9 cut(s) | 271, 1173, 1411, 1593, 1708, 2008, 2181, 2248, 2392 |
| DraI | TTTAAA | 4 cut(s) | 36, 88, 169, 1149 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 686 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 686 |
| Eam1104I | CTCTTC | 2 cut(s) | 138, 542 |
| EarI | CTCTTC | 2 cut(s) | 138, 542 |
| Ecl136II | GAGCTC | 1 cut(s) | 1934 |
| Eco130I | CCWWGG | 4 cut(s) | 1177, 1199, 1233, 2254 |
| Eco24I | GRGCYC | 1 cut(s) | 1936 |
| Eco32I | GATATC | 2 cut(s) | 615, 1314 |
| Eco47I | GGWCC | 4 cut(s) | 776, 784, 1732, 2632 |
| Eco53kI | GAGCTC | 1 cut(s) | 1934 |
| Eco57I | CTGAAG | 2 cut(s) | 1785, 2198 |
| EcoICRI | GAGCTC | 1 cut(s) | 1934 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2003 |
| EcoRII | CCWGG | 1 cut(s) | 180 |
| EcoRV | GATATC | 2 cut(s) | 615, 1314 |
| EcoT14I | CCWWGG | 4 cut(s) | 1177, 1199, 1233, 2254 |
| EcoT22I | ATGCAT | 6 cut(s) | 462, 655, 1558, 2052, 2284, 2458 |
| EcoT38I | GRGCYC | 1 cut(s) | 1936 |
| ErhI | CCWWGG | 4 cut(s) | 1177, 1199, 1233, 2254 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 37, 69, 335, 367 |
| FaqI | GGGAC | 2 cut(s) | 2347, 2572 |
| FauI | CCCGC | 1 cut(s) | 2569 |
| FauNDI | CATATG | 3 cut(s) | 2088, 2327, 2364 |
| FblI | GTMKAC | 3 cut(s) | 58, 1214, 2021 |
| Fnu4HI | GCNGC | 5 cut(s) | 51, 192, 213, 900, 1388 |
| FokI | GGATG | 6 cut(s) | 347, 778, 997, 1182, 1529, 2544 |
| FriOI | GRGCYC | 1 cut(s) | 1936 |
| Fsp4HI | GCNGC | 5 cut(s) | 51, 192, 213, 900, 1388 |
| FspBI | CTAG | 6 cut(s) | 638, 896, 1200, 1299, 1331, 2466 |
| GluI | GCNGC | 5 cut(s) | 51, 192, 213, 900, 1388 |
| GsaI | CCCAGC | 2 cut(s) | 1506, 2345 |
| HaeIII | GGCC | 3 cut(s) | 1102, 2160, 2379 |
| HapII | CCGG | 3 cut(s) | 234, 886, 1409 |
| HinfI | GANTC | 6 cut(s) | 374, 865, 968, 1106, 1211, 1723 |
| HpaII | CCGG | 3 cut(s) | 234, 886, 1409 |
| HphI | GGTGA | 5 cut(s) | 60, 281, 1055, 1909, 2449 |
| Hpy188I | TCNGA | 9 cut(s) | 373, 420, 612, 646, 724, 1602, 1702, 1736, 2461 |
| Hpy188III | TCNNGA | 9 cut(s) | 78, 234, 292, 452, 576, 993, 1426, 1591, 1913 |
| HpyAV | CCTTC | 5 cut(s) | 206, 466, 1391, 1847, 2165 |
| HpyCH4III | ACNGT | 7 cut(s) | 505, 661, 1694, 2224, 2232, 2567, 2615 |
| HpyCH4IV | ACGT | 1 cut(s) | 1917 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 221, 710, 803, 1022, 2462 |
| HpyF3I | CTNAG | 9 cut(s) | 5, 220, 370, 477, 526, 723, 1524, 1861, 1874 |
| HpySE526I | ACGT | 1 cut(s) | 1917 |
| Kpn2I | TCCGGA | 1 cut(s) | 233 |
| Kzo9I | GATC | 9 cut(s) | 271, 1173, 1411, 1593, 1708, 2008, 2181, 2248, 2392 |
| LmnI | GCTCC | 2 cut(s) | 93, 1931 |
| Lsp1109I | GCAGC | 5 cut(s) | 37, 199, 203, 911, 1374 |
| MabI | ACCWGGT | 1 cut(s) | 180 |
| MaeI | CTAG | 6 cut(s) | 638, 896, 1200, 1299, 1331, 2466 |
| MaeII | ACGT | 1 cut(s) | 1917 |
| MaeIII | GTNAC | 6 cut(s) | 66, 365, 490, 1111, 1571, 1788 |
| MalI | GATC | 9 cut(s) | 273, 1175, 1413, 1595, 1710, 2010, 2183, 2250, 2394 |
| MboI | GATC | 9 cut(s) | 271, 1173, 1411, 1593, 1708, 2008, 2181, 2248, 2392 |
| MboII | GAAGA | 7 cut(s) | 125, 500, 559, 1181, 1901, 2071, 2191 |
| MflI | RGATCY | 5 cut(s) | 1173, 1593, 2008, 2181, 2248 |
| MhlI | GDGCHC | 4 cut(s) | 523, 558, 1144, 1936 |
| MlyI | GAGTC | 2 cut(s) | 1100, 1220 |
| MmeI | TCCRAC | 4 cut(s) | 743, 1204, 1494, 2519 |
| Mph1103I | ATGCAT | 6 cut(s) | 462, 655, 1558, 2052, 2284, 2458 |
| MroI | TCCGGA | 1 cut(s) | 233 |
| MslI | CAYNNNNRTG | 7 cut(s) | 252, 465, 561, 563, 873, 1671, 1890 |
| MspA1I | CMGCKG | 1 cut(s) | 2528 |
| MspI | CCGG | 3 cut(s) | 234, 886, 1409 |
| MspR9I | CCNGG | 1 cut(s) | 182 |
| MssI | GTTTAAAC | 1 cut(s) | 169 |
| Mva1269I | GAATGC | 4 cut(s) | 706, 1018, 1125, 1586 |
| MvaI | CCWGG | 1 cut(s) | 182 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 221, 710, 803, 1022, 2462 |
| NcoI | CCATGG | 2 cut(s) | 1177, 1233 |
| NdeI | CATATG | 3 cut(s) | 2088, 2327, 2364 |
| NdeII | GATC | 9 cut(s) | 271, 1173, 1411, 1593, 1708, 2008, 2181, 2248, 2392 |
| NlaIV | GGNNCC | 3 cut(s) | 786, 1101, 1963 |
| NmuCI | GTSAC | 1 cut(s) | 66 |
| NsiI | ATGCAT | 6 cut(s) | 462, 655, 1558, 2052, 2284, 2458 |
| NspI | RCATGY | 4 cut(s) | 65, 464, 1163, 1629 |
| OliI | CACNNNNGTG | 1 cut(s) | 563 |
| PagI | TCATGA | 2 cut(s) | 451, 1912 |
| PaqCI | CACCTGC | 1 cut(s) | 1878 |
| PciI | ACATGT | 1 cut(s) | 61 |
| PctI | GAATGC | 4 cut(s) | 706, 1018, 1125, 1586 |
| PfeI | GAWTC | 4 cut(s) | 374, 865, 968, 1723 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2328 |
| PkrI | GCNGC | 5 cut(s) | 52, 193, 214, 901, 1389 |
| PleI | GAGTC | 2 cut(s) | 1100, 1219 |
| PmeI | GTTTAAAC | 1 cut(s) | 169 |
| PpsI | GAGTC | 2 cut(s) | 1100, 1219 |
| PscI | ACATGT | 1 cut(s) | 61 |
| PshAI | GACNNNNGTC | 1 cut(s) | 64 |
| PsiI | TTATAA | 1 cut(s) | 1980 |
| Psp124BI | GAGCTC | 1 cut(s) | 1936 |
| Psp6I | CCWGG | 1 cut(s) | 180 |
| PspFI | CCCAGC | 2 cut(s) | 1502, 2341 |
| PspGI | CCWGG | 1 cut(s) | 180 |
| PspN4I | GGNNCC | 3 cut(s) | 786, 1101, 1963 |
| PspPI | GGNCC | 6 cut(s) | 776, 784, 1100, 1732, 2377, 2632 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 740, 772 |
| PstI | CTGCAG | 1 cut(s) | 1453 |
| PstNI | CAGNNNCTG | 2 cut(s) | 377, 1109 |
| PsuI | RGATCY | 5 cut(s) | 1173, 1593, 2008, 2181, 2248 |
| PvuII | CAGCTG | 1 cut(s) | 2528 |
| RsaI | GTAC | 6 cut(s) | 43, 425, 1184, 2560, 2617, 2626 |
| RsaNI | GTAC | 6 cut(s) | 42, 424, 1183, 2559, 2616, 2625 |
| RseI | CAYNNNNRTG | 7 cut(s) | 252, 465, 561, 563, 873, 1671, 1890 |
| SacI | GAGCTC | 1 cut(s) | 1936 |
| SatI | GCNGC | 5 cut(s) | 51, 192, 213, 900, 1388 |
| Sau3AI | GATC | 9 cut(s) | 271, 1173, 1411, 1593, 1708, 2008, 2181, 2248, 2392 |
| Sau96I | GGNCC | 6 cut(s) | 776, 784, 1100, 1732, 2377, 2632 |
| SchI | GAGTC | 2 cut(s) | 1100, 1220 |
| ScrFI | CCNGG | 1 cut(s) | 182 |
| SduI | GDGCHC | 4 cut(s) | 523, 558, 1144, 1936 |
| SexAI | ACCWGGT | 1 cut(s) | 180 |
| SfcI | CTRYAG | 2 cut(s) | 1215, 1449 |
| SinI | GGWCC | 4 cut(s) | 776, 784, 1732, 2632 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 252, 465, 561, 563, 873, 1671, 1890 |
| SmlI | CTYRAG | 2 cut(s) | 1797, 2093 |
| SmoI | CTYRAG | 2 cut(s) | 1797, 2093 |
| SsiI | CCGC | 4 cut(s) | 965, 1959, 2201, 2576 |
| SspI | AATATT | 2 cut(s) | 1534, 2422 |
| SspMI | CTAG | 6 cut(s) | 638, 896, 1200, 1299, 1331, 2466 |
| SstI | GAGCTC | 1 cut(s) | 1936 |
| StyD4I | CCNGG | 1 cut(s) | 180 |
| StyI | CCWWGG | 4 cut(s) | 1177, 1199, 1233, 2254 |
| TaaI | ACNGT | 7 cut(s) | 505, 661, 1694, 2224, 2232, 2567, 2615 |
| TaiI | ACGT | 1 cut(s) | 1920 |
| TaqI | TCGA | 4 cut(s) | 79, 293, 1192, 2415 |
| TatI | WGTACW | 4 cut(s) | 423, 2558, 2615, 2624 |
| TfiI | GAWTC | 4 cut(s) | 374, 865, 968, 1723 |
| TscAI | CASTG | 2 cut(s) | 306, 1886 |
| TseFI | GTSAC | 1 cut(s) | 66 |
| TseI | GCWGC | 5 cut(s) | 50, 191, 212, 899, 1387 |
| Tsp45I | GTSAC | 1 cut(s) | 66 |
| TspGWI | ACGGA | 1 cut(s) | 901 |
| TspRI | CASTG | 2 cut(s) | 306, 1886 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2328 |
| VneI | GTGCAC | 2 cut(s) | 554, 1140 |
| VpaK11BI | GGWCC | 4 cut(s) | 776, 784, 1732, 2632 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2003 |
| XapI | RAATTY | 4 cut(s) | 10, 82, 229, 604 |
| XceI | RCATGY | 4 cut(s) | 65, 464, 1163, 1629 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2053 |
| XmaJI | CCTAGG | 1 cut(s) | 1199 |
| XmiI | GTMKAC | 3 cut(s) | 58, 1214, 2021 |
| XspI | CTAG | 6 cut(s) | 638, 896, 1200, 1299, 1331, 2466 |
| Zsp2I | ATGCAT | 6 cut(s) | 462, 655, 1558, 2052, 2284, 2458 |