Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Forward (+)

22296213 .. 22296960

Gene Structure 748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0216600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCTTGCATTGGAAGATTACGACAGCTTGTTTGATGTTACTAGGGTTCCGATCACTGGAATTCTGGTTGGGGTAGAGATATTTGGATTACCACTGGCACTGTTTATCGAAGTGGCGGTGATGATGATTGGTTCCACCTTGGGGAAGGTTTTAAGGCAGGATAAGCCAGCGATCTGGTGTGGGACGGCACACGTTCAGATTCGGTACCGCATATCGAATCCTGTAAAGCAAGTATATCTACCGCTGTTATTTGAATTTACCTCTGAGGTAGAGGCAACTGTGAAGTTCAAGTATGAGAAGATGGTTGGGTATTGTGAAGTCTATGGGTTGTTGGAGCATCTGGTTGATGGATGCATTAGTGGCTCGAGGTGGAGCTTGGCCTTGGCTAAGCAGCTCAACATGTTCAAGCCAAAACTGGTTGAGGTGAGGATTTCCCCATCGCAGGCGATGGTGGGAACAGAGGAGGCAGTTCAGATCACAGGTTTGAAACAAACTGTTATGAATGGCGTTGGTTCCATTTTGCAAGCAGACAATGAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

180

Amino Acids

19.92

Weight (kDa)

5.43

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	204
AccB1I	GGYRCC	1 cut(s)	204
AciI	CCGC	3 cut(s)	116, 208, 242
AcsI	RAATTY	2 cut(s)	60, 254
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	3 cut(s)	56, 141, 442
AflIII	ACRYGT	2 cut(s)	190, 399
AgsI	TTSAA	4 cut(s)	254, 289, 406, 487
AhdI	GACNNNNNGTC	1 cut(s)	535
AluBI	AGCT	3 cut(s)	27, 375, 394
AluI	AGCT	3 cut(s)	27, 375, 394
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	391
ApoI	RAATTY	2 cut(s)	60, 254
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
Asp718I	GGTACC	1 cut(s)	204
AsuHPI	GGTGA	2 cut(s)	130, 436
AvaI	CYCGRG	1 cut(s)	364
BanI	GGYRCC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	4 cut(s)	295, 341, 442, 445
BceAI	ACGGC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	42
BisI	GCNGC	1 cut(s)	392
BlpI	GCTNAGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	393
BmeRI	GACNNNNNGTC	1 cut(s)	535
BmeT110I	CYCGRG	1 cut(s)	364
BmiI	GGNNCC	4 cut(s)	48, 133, 206, 514
BmsI	GCATC	2 cut(s)	341, 346
Bpu1102I	GCTNAGC	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	138, 381
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 141, 442
Bse1I	ACTGG	3 cut(s)	61, 99, 420
BseDI	CCNNGG	2 cut(s)	138, 381
BseGI	GGATG	1 cut(s)	356
BseLI	CCNNNNNNNGG	3 cut(s)	56, 141, 442
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	3 cut(s)	61, 99, 420
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	1 cut(s)	403
BshFI	GGCC	1 cut(s)	380
BshNI	GGYRCC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	364
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	3 cut(s)	56, 141, 442
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	380
BsoBI	CYCGRG	1 cut(s)	364
Bsp143I	GATC	3 cut(s)	51, 171, 474
Bsp1720I	GCTNAGC	1 cut(s)	387
BspACI	CCGC	3 cut(s)	116, 208, 242
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	4 cut(s)	48, 133, 206, 514
BspT107I	GGYRCC	1 cut(s)	204
BsrI	ACTGG	3 cut(s)	61, 99, 420
BssECI	CCNNGG	2 cut(s)	138, 381
BssMI	GATC	3 cut(s)	51, 171, 474
BssT1I	CCWWGG	2 cut(s)	138, 381
Bst4CI	ACNGT	3 cut(s)	102, 280, 496
BstC8I	GCNNGC	4 cut(s)	6, 168, 444, 525
BstDEI	CTNAG	2 cut(s)	264, 387
BstF5I	GGATG	1 cut(s)	356
BstKTI	GATC	3 cut(s)	54, 174, 477
BstMBI	GATC	3 cut(s)	51, 171, 474
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 360
BstNSI	RCATGY	1 cut(s)	403
BstV1I	GCAGC	1 cut(s)	403
BstXI	CCANNNNNNTGG	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	380
BtgZI	GCGATG	2 cut(s)	423, 461
BtsCI	GGATG	1 cut(s)	356
BtsIMutI	CAGTG	3 cut(s)	54, 92, 98
Cac8I	GCNNGC	4 cut(s)	6, 168, 444, 525
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	1 cut(s)	400
CviJI	RGCY	8 cut(s)	27, 166, 363, 375, 380, 386, 394, 409
CviKI_1	RGCY	8 cut(s)	27, 166, 363, 375, 380, 386, 394, 409
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	264, 387
DpnI	GATC	3 cut(s)	53, 173, 476
DpnII	GATC	3 cut(s)	51, 171, 474
DriI	GACNNNNNGTC	1 cut(s)	535
Eam1105I	GACNNNNNGTC	1 cut(s)	535
Eco130I	CCWWGG	2 cut(s)	138, 381
Eco88I	CYCGRG	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	60
EcoT14I	CCWWGG	2 cut(s)	138, 381
EcoT22I	ATGCAT	1 cut(s)	356
ErhI	CCWWGG	2 cut(s)	138, 381
FaeI	CATG	1 cut(s)	403
FaiI	YATR	6 cut(s)	212, 235, 294, 324, 401, 500
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	392
FokI	GGATG	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	392
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	380
Hin1II	CATG	1 cut(s)	403
HinfI	GANTC	3 cut(s)	199, 217, 536
HphI	GGTGA	2 cut(s)	130, 436
Hpy188I	TCNGA	4 cut(s)	51, 198, 265, 474
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	3 cut(s)	102, 280, 496
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	3 cut(s)	8, 354, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 360
HpyF3I	CTNAG	2 cut(s)	264, 387
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	403
KpnI	GGTACC	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	51, 171, 474
LmnI	GCTCC	2 cut(s)	334, 372
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	2 cut(s)	341, 346
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	3 cut(s)	53, 173, 476
MboI	GATC	3 cut(s)	51, 171, 474
MboII	GAAGA	2 cut(s)	26, 310
MluCI	AATT	2 cut(s)	60, 254
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	8 cut(s)	259, 265, 271, 360, 415, 420, 454, 457
Mph1103I	ATGCAT	1 cut(s)	356
MseI	TTAA	2 cut(s)	152, 541
MspA1I	CMGCKG	1 cut(s)	244
MwoI	GCNNNNNNNGC	2 cut(s)	163, 360
NdeII	GATC	3 cut(s)	51, 171, 474
NlaIII	CATG	1 cut(s)	403
NlaIV	GGNNCC	4 cut(s)	48, 133, 206, 514
NsiI	ATGCAT	1 cut(s)	356
NspI	RCATGY	1 cut(s)	403
PaeR7I	CTCGAG	1 cut(s)	364
PciI	ACATGT	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	199, 217
PkrI	GCNGC	1 cut(s)	393
PscI	ACATGT	1 cut(s)	399
PspN4I	GGNNCC	4 cut(s)	48, 133, 206, 514
PspXI	VCTCGAGB	1 cut(s)	364
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	152, 541
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	3 cut(s)	51, 171, 474
SfaNI	GCATC	2 cut(s)	341, 346
Sfr274I	CTCGAG	1 cut(s)	364
SlaI	CTCGAG	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	2 cut(s)	60, 254
SsiI	CCGC	3 cut(s)	116, 208, 242
SspMI	CTAG	1 cut(s)	42
StyI	CCWWGG	2 cut(s)	138, 381
TaaI	ACNGT	3 cut(s)	102, 280, 496
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	3 cut(s)	108, 215, 365
TasI	AATT	2 cut(s)	60, 254
TfiI	GAWTC	2 cut(s)	199, 217
Tru1I	TTAA	2 cut(s)	152, 541
Tru9I	TTAA	2 cut(s)	152, 541
TscAI	CASTG	3 cut(s)	61, 99, 105
TseI	GCWGC	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	515
TspRI	CASTG	3 cut(s)	61, 99, 105
XapI	RAATTY	2 cut(s)	60, 254
XceI	RCATGY	1 cut(s)	403
XhoI	CTCGAG	1 cut(s)	364
XspI	CTAG	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.