Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Lectin_legB | PF00139 | 9 - 232 | 1e-56 | Legume lectin domain |
| Lectin_L-type_dom | PF18483 | 25 - 231 | 1.7e-07 | Legume lectin beta-barrel domain |
| Pkinase | PF00069 | 322 - 384 | 4e-10 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 325 - 383 | 1e-07 | Protein tyrosine and serine/threonine kinase |
| PK_Tyr_Ser-Thr | PF07714 | 388 - 496 | 1.8e-21 | Protein tyrosine and serine/threonine kinase |
| Pkinase | PF00069 | 394 - 562 | 3.9e-26 | Protein kinase domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1434 |
| AccB1I | GGYRCC | 1 cut(s) | 1125 |
| AccI | GTMKAC | 2 cut(s) | 351, 1434 |
| AccII | CGCG | 1 cut(s) | 1298 |
| AciI | CCGC | 2 cut(s) | 598, 684 |
| AclWI | GGATC | 2 cut(s) | 860, 1115 |
| AcsI | RAATTY | 6 cut(s) | 223, 401, 818, 1288, 1782, 1831 |
| AcuI | CTGAAG | 1 cut(s) | 31 |
| AcyI | GRCGYC | 1 cut(s) | 1431 |
| AfaI | GTAC | 6 cut(s) | 52, 263, 696, 913, 1689, 1813 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 141, 501, 506, 1135 |
| AflIII | ACRYGT | 1 cut(s) | 366 |
| AgsI | TTSAA | 9 cut(s) | 491, 863, 1033, 1294, 1394, 1668, 1685, 1700, 1827 |
| AjnI | CCWGG | 1 cut(s) | 516 |
| AleI | CACNNNNGTG | 1 cut(s) | 420 |
| AluBI | AGCT | 9 cut(s) | 278, 539, 561, 982, 1322, 1466, 1568, 1703, 1769 |
| AluI | AGCT | 9 cut(s) | 278, 539, 561, 982, 1322, 1466, 1568, 1703, 1769 |
| Alw21I | GWGCWC | 1 cut(s) | 1642 |
| Alw26I | GTCTC | 2 cut(s) | 341, 1809 |
| AlwI | GGATC | 2 cut(s) | 860, 1115 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1772 |
| AoxI | GGCC | 4 cut(s) | 340, 917, 1200, 1661 |
| ApeKI | GCWGC | 3 cut(s) | 89, 1094, 1565 |
| ApoI | RAATTY | 6 cut(s) | 223, 401, 818, 1288, 1782, 1831 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 495 |
| AspA2I | CCTAGG | 1 cut(s) | 920 |
| AspLEI | GCGC | 4 cut(s) | 128, 209, 633, 706 |
| AspS9I | GGNCC | 4 cut(s) | 300, 439, 917, 1333 |
| AsuC2I | CCSGG | 1 cut(s) | 1207 |
| AsuHPI | GGTGA | 6 cut(s) | 31, 109, 151, 208, 1013, 1150 |
| AsuII | TTCGAA | 3 cut(s) | 903, 1286, 1497 |
| AsuNHI | GCTAGC | 1 cut(s) | 274 |
| AvaII | GGWCC | 3 cut(s) | 300, 439, 1333 |
| AvrII | CCTAGG | 1 cut(s) | 920 |
| BanI | GGYRCC | 1 cut(s) | 1125 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 917, 949, 1163, 1195, 1804, 1836 |
| BbsI | GAAGAC | 1 cut(s) | 1032 |
| Bbv12I | GWGCWC | 1 cut(s) | 1642 |
| BbvI | GCAGC | 3 cut(s) | 76, 1081, 1577 |
| BccI | CCATC | 1 cut(s) | 883 |
| BceAI | ACGGC | 1 cut(s) | 280 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 237, 271 |
| BciT130I | CCWGG | 1 cut(s) | 518 |
| BciVI | GTATCC | 1 cut(s) | 617 |
| BclI | TGATCA | 2 cut(s) | 735, 1486 |
| BcnI | CCSGG | 1 cut(s) | 1207 |
| BcoDI | GTCTC | 2 cut(s) | 341, 1809 |
| BfaI | CTAG | 7 cut(s) | 77, 275, 558, 921, 1266, 1416, 1779 |
| BfmI | CTRYAG | 3 cut(s) | 1095, 1435, 1657 |
| BfoI | RGCGCY | 1 cut(s) | 129 |
| BfuI | GTATCC | 1 cut(s) | 617 |
| BglII | AGATCT | 1 cut(s) | 1067 |
| BisI | GCNGC | 3 cut(s) | 90, 1095, 1566 |
| BlnI | CCTAGG | 1 cut(s) | 920 |
| BlsI | GCNGC | 3 cut(s) | 91, 1096, 1567 |
| BmcAI | AGTACT | 2 cut(s) | 52, 1689 |
| Bme1390I | CCNGG | 2 cut(s) | 518, 1207 |
| Bme18I | GGWCC | 3 cut(s) | 300, 439, 1333 |
| BmgT120I | GGNCC | 4 cut(s) | 300, 439, 917, 1333 |
| BmiI | GGNNCC | 4 cut(s) | 301, 441, 1127, 1372 |
| BmrFI | CCNGG | 2 cut(s) | 518, 1207 |
| BmsI | GCATC | 4 cut(s) | 76, 764, 786, 1826 |
| BmtI | GCTAGC | 1 cut(s) | 278 |
| BpiI | GAAGAC | 1 cut(s) | 1032 |
| BpmI | CTGGAG | 2 cut(s) | 151, 539 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1121 |
| Bpu14I | TTCGAA | 3 cut(s) | 903, 1286, 1497 |
| BpuEI | CTTGAG | 1 cut(s) | 1176 |
| BpuMI | CCSGG | 1 cut(s) | 1207 |
| BsaHI | GRCGYC | 1 cut(s) | 1431 |
| BsaJI | CCNNGG | 4 cut(s) | 319, 500, 920, 1336 |
| BsaWI | WCCGGW | 2 cut(s) | 197, 658 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 26, 56, 136, 166, 1157, 1187, 1601, 1631 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 141, 501, 506, 1135 |
| Bse1I | ACTGG | 2 cut(s) | 1733, 1777 |
| Bse3DI | GCAATG | 2 cut(s) | 607, 1276 |
| BseBI | CCWGG | 1 cut(s) | 518 |
| BseDI | CCNNGG | 4 cut(s) | 319, 500, 920, 1336 |
| BseGI | GGATG | 5 cut(s) | 191, 779, 898, 1635, 1642 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 141, 501, 506, 1135 |
| BseMI | GCAATG | 2 cut(s) | 607, 1276 |
| BseMII | CTCAG | 4 cut(s) | 489, 586, 1779, 1791 |
| BseNI | ACTGG | 2 cut(s) | 1733, 1777 |
| BseRI | GAGGAG | 1 cut(s) | 1737 |
| BseXI | GCAGC | 3 cut(s) | 76, 1081, 1577 |
| Bsh1236I | CGCG | 1 cut(s) | 1298 |
| Bsh1285I | CGRYCG | 1 cut(s) | 154 |
| BshFI | GGCC | 4 cut(s) | 342, 919, 1202, 1663 |
| BshNI | GGYRCC | 1 cut(s) | 1125 |
| BsiEI | CGRYCG | 1 cut(s) | 154 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1642 |
| BsiSI | CCGG | 3 cut(s) | 198, 659, 1206 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 141, 501, 506, 1135 |
| BsmAI | GTCTC | 2 cut(s) | 341, 1809 |
| BsnI | GGCC | 4 cut(s) | 342, 919, 1202, 1663 |
| Bsp119I | TTCGAA | 3 cut(s) | 903, 1286, 1497 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1642 |
| Bsp143I | GATC | 8 cut(s) | 451, 613, 735, 865, 1067, 1107, 1486, 1557 |
| Bsp19I | CCATGG | 1 cut(s) | 1336 |
| BspACI | CCGC | 2 cut(s) | 598, 684 |
| BspANI | GGCC | 4 cut(s) | 342, 919, 1202, 1663 |
| BspCNI | CTCAG | 4 cut(s) | 488, 585, 1778, 1792 |
| BspFNI | CGCG | 1 cut(s) | 1298 |
| BspLI | GGNNCC | 4 cut(s) | 301, 441, 1127, 1372 |
| BspMAI | CTGCAG | 1 cut(s) | 1099 |
| BspOI | GCTAGC | 1 cut(s) | 278 |
| BspPI | GGATC | 2 cut(s) | 860, 1115 |
| BspT104I | TTCGAA | 3 cut(s) | 903, 1286, 1497 |
| BspT107I | GGYRCC | 1 cut(s) | 1125 |
| BsrDI | GCAATG | 2 cut(s) | 607, 1276 |
| BsrI | ACTGG | 2 cut(s) | 1733, 1777 |
| BssECI | CCNNGG | 4 cut(s) | 319, 500, 920, 1336 |
| BssMI | GATC | 8 cut(s) | 451, 613, 735, 865, 1067, 1107, 1486, 1557 |
| BssNI | GRCGYC | 1 cut(s) | 1431 |
| BssT1I | CCWWGG | 3 cut(s) | 500, 920, 1336 |
| Bst2UI | CCWGG | 1 cut(s) | 518 |
| Bst4CI | ACNGT | 9 cut(s) | 362, 433, 637, 694, 1130, 1347, 1363, 1439, 1658 |
| BstACI | GRCGYC | 1 cut(s) | 1431 |
| BstBI | TTCGAA | 3 cut(s) | 903, 1286, 1497 |
| BstC8I | GCNNGC | 3 cut(s) | 276, 344, 448 |
| BstDEI | CTNAG | 5 cut(s) | 475, 572, 1121, 1765, 1800 |
| BstDSI | CCRYGG | 1 cut(s) | 1336 |
| BstF5I | GGATG | 5 cut(s) | 191, 779, 898, 1635, 1642 |
| BstFNI | CGCG | 1 cut(s) | 1298 |
| BstH2I | RGCGCY | 1 cut(s) | 129 |
| BstHHI | GCGC | 4 cut(s) | 128, 209, 633, 706 |
| BstKTI | GATC | 8 cut(s) | 454, 616, 738, 868, 1070, 1110, 1489, 1560 |
| BstMAI | GTCTC | 2 cut(s) | 341, 1809 |
| BstMBI | GATC | 8 cut(s) | 451, 613, 735, 865, 1067, 1107, 1486, 1557 |
| BstMCI | CGRYCG | 1 cut(s) | 154 |
| BstNI | CCWGG | 1 cut(s) | 518 |
| BstSCI | CCNGG | 2 cut(s) | 516, 1205 |
| BstSFI | CTRYAG | 3 cut(s) | 1095, 1435, 1657 |
| BstUI | CGCG | 1 cut(s) | 1298 |
| BstV1I | GCAGC | 3 cut(s) | 76, 1081, 1577 |
| BstV2I | GAAGAC | 1 cut(s) | 1032 |
| BstX2I | RGATCY | 2 cut(s) | 865, 1067 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 422 |
| BstYI | RGATCY | 2 cut(s) | 865, 1067 |
| BsuI | GTATCC | 1 cut(s) | 617 |
| BsuRI | GGCC | 4 cut(s) | 342, 919, 1202, 1663 |
| BtgI | CCRYGG | 1 cut(s) | 1336 |
| BtsCI | GGATG | 5 cut(s) | 191, 779, 898, 1635, 1642 |
| BtsIMutI | CAGTG | 2 cut(s) | 1654, 1740 |
| Cac8I | GCNNGC | 3 cut(s) | 276, 344, 448 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1772 |
| CfoI | GCGC | 4 cut(s) | 128, 209, 633, 706 |
| Cfr13I | GGNCC | 4 cut(s) | 300, 439, 917, 1333 |
| CseI | GACGC | 1 cut(s) | 136 |
| Csp6I | GTAC | 6 cut(s) | 51, 262, 695, 912, 1688, 1812 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1345, 1380, 1710, 1745 |
| CviAII | CATG | 6 cut(s) | 455, 733, 950, 1337, 1384, 1808 |
| CviQI | GTAC | 6 cut(s) | 51, 262, 695, 912, 1688, 1812 |
| DdeI | CTNAG | 5 cut(s) | 475, 572, 1121, 1765, 1800 |
| DpnI | GATC | 8 cut(s) | 453, 615, 737, 867, 1069, 1109, 1488, 1559 |
| DpnII | GATC | 8 cut(s) | 451, 613, 735, 865, 1067, 1107, 1486, 1557 |
| DraI | TTTAAA | 1 cut(s) | 817 |
| Eco130I | CCWWGG | 3 cut(s) | 500, 920, 1336 |
| Eco147I | AGGCCT | 1 cut(s) | 1663 |
| Eco32I | GATATC | 3 cut(s) | 409, 1059, 1258 |
| Eco47I | GGWCC | 3 cut(s) | 300, 439, 1333 |
| Eco57I | CTGAAG | 1 cut(s) | 31 |
| EcoO109I | RGGNCCY | 3 cut(s) | 300, 439, 917 |
| EcoRI | GAATTC | 1 cut(s) | 401 |
| EcoRII | CCWGG | 1 cut(s) | 516 |
| EcoRV | GATATC | 3 cut(s) | 409, 1059, 1258 |
| EcoT14I | CCWWGG | 3 cut(s) | 500, 920, 1336 |
| EcoT22I | ATGCAT | 1 cut(s) | 779 |
| ErhI | CCWWGG | 3 cut(s) | 500, 920, 1336 |
| FaeI | CATG | 6 cut(s) | 458, 736, 953, 1340, 1387, 1811 |
| FatI | CATG | 6 cut(s) | 454, 732, 949, 1336, 1383, 1807 |
| FauNDI | CATATG | 1 cut(s) | 1039 |
| FbaI | TGATCA | 2 cut(s) | 735, 1486 |
| FblI | GTMKAC | 2 cut(s) | 351, 1434 |
| Fnu4HI | GCNGC | 3 cut(s) | 90, 1095, 1566 |
| FokI | GGATG | 5 cut(s) | 178, 786, 905, 1629, 1642 |
| Fsp4HI | GCNGC | 3 cut(s) | 90, 1095, 1566 |
| FspBI | CTAG | 7 cut(s) | 77, 275, 558, 921, 1266, 1416, 1779 |
| GlaI | GCGC | 4 cut(s) | 127, 208, 632, 705 |
| GluI | GCNGC | 3 cut(s) | 90, 1095, 1566 |
| GsuI | CTGGAG | 2 cut(s) | 151, 539 |
| HaeII | RGCGCY | 1 cut(s) | 129 |
| HaeIII | GGCC | 4 cut(s) | 342, 919, 1202, 1663 |
| HapII | CCGG | 3 cut(s) | 198, 659, 1206 |
| HgaI | GACGC | 1 cut(s) | 136 |
| HhaI | GCGC | 4 cut(s) | 128, 209, 633, 706 |
| Hin1I | GRCGYC | 1 cut(s) | 1431 |
| Hin1II | CATG | 6 cut(s) | 458, 736, 953, 1340, 1387, 1811 |
| Hin6I | GCGC | 4 cut(s) | 126, 207, 631, 704 |
| HinP1I | GCGC | 4 cut(s) | 126, 207, 631, 704 |
| HincII | GTYRAC | 1 cut(s) | 1402 |
| HindII | GTYRAC | 1 cut(s) | 1402 |
| HindIII | AAGCTT | 1 cut(s) | 980 |
| HinfI | GANTC | 9 cut(s) | 156, 242, 376, 554, 884, 1283, 1424, 1681, 1802 |
| HpaI | GTTAAC | 1 cut(s) | 1402 |
| HpaII | CCGG | 3 cut(s) | 198, 659, 1206 |
| HphI | GGTGA | 6 cut(s) | 31, 109, 151, 208, 1013, 1150 |
| Hpy166II | GTNNAC | 6 cut(s) | 352, 1009, 1141, 1333, 1402, 1435 |
| Hpy188I | TCNGA | 2 cut(s) | 618, 1429 |
| Hpy188III | TCNNGA | 3 cut(s) | 168, 1646, 1779 |
| Hpy8I | GTNNAC | 6 cut(s) | 352, 1009, 1141, 1333, 1402, 1435 |
| Hpy99I | CGWCG | 3 cut(s) | 152, 272, 958 |
| HpyAV | CCTTC | 9 cut(s) | 21, 55, 184, 188, 506, 826, 1541, 1674, 1761 |
| HpyCH4III | ACNGT | 9 cut(s) | 362, 433, 637, 694, 1130, 1347, 1363, 1439, 1658 |
| HpyCH4IV | ACGT | 2 cut(s) | 366, 1431 |
| HpyCH4V | TGCA | 6 cut(s) | 17, 248, 777, 1097, 1454, 1817 |
| HpyF3I | CTNAG | 5 cut(s) | 475, 572, 1121, 1765, 1800 |
| HpySE526I | ACGT | 2 cut(s) | 366, 1431 |
| Hsp92I | GRCGYC | 1 cut(s) | 1431 |
| Hsp92II | CATG | 6 cut(s) | 458, 736, 953, 1340, 1387, 1811 |
| HspAI | GCGC | 4 cut(s) | 126, 207, 631, 704 |
| Ksp22I | TGATCA | 2 cut(s) | 735, 1486 |
| KspAI | GTTAAC | 1 cut(s) | 1402 |
| Kzo9I | GATC | 8 cut(s) | 451, 613, 735, 865, 1067, 1107, 1486, 1557 |
| LmnI | GCTCC | 1 cut(s) | 144 |
| Lsp1109I | GCAGC | 3 cut(s) | 76, 1081, 1577 |
| LweI | GCATC | 4 cut(s) | 76, 764, 786, 1826 |
| MaeI | CTAG | 7 cut(s) | 77, 275, 558, 921, 1266, 1416, 1779 |
| MaeII | ACGT | 2 cut(s) | 366, 1431 |
| MaeIII | GTNAC | 3 cut(s) | 157, 362, 1245 |
| MalI | GATC | 8 cut(s) | 453, 615, 737, 867, 1069, 1109, 1488, 1559 |
| MboI | GATC | 8 cut(s) | 451, 613, 735, 865, 1067, 1107, 1486, 1557 |
| MboII | GAAGA | 9 cut(s) | 403, 838, 841, 875, 1037, 1066, 1238, 1812, 1815 |
| MfeI | CAATTG | 1 cut(s) | 1706 |
| MflI | RGATCY | 2 cut(s) | 865, 1067 |
| MhlI | GDGCHC | 1 cut(s) | 1642 |
| MlyI | GAGTC | 4 cut(s) | 165, 251, 878, 1811 |
| MmeI | TCCRAC | 3 cut(s) | 136, 1143, 1260 |
| Mph1103I | ATGCAT | 1 cut(s) | 779 |
| MroXI | GAANNNNTTC | 1 cut(s) | 495 |
| MseI | TTAA | 7 cut(s) | 309, 639, 816, 966, 1050, 1401, 1692 |
| MslI | CAYNNNNRTG | 1 cut(s) | 420 |
| MspA1I | CMGCKG | 1 cut(s) | 1568 |
| MspI | CCGG | 3 cut(s) | 198, 659, 1206 |
| MspR9I | CCNGG | 2 cut(s) | 518, 1207 |
| MunI | CAATTG | 1 cut(s) | 1706 |
| MvaI | CCWGG | 1 cut(s) | 518 |
| MvnI | CGCG | 1 cut(s) | 1298 |
| NciI | CCSGG | 1 cut(s) | 1207 |
| NcoI | CCATGG | 1 cut(s) | 1336 |
| NdeI | CATATG | 1 cut(s) | 1039 |
| NdeII | GATC | 8 cut(s) | 451, 613, 735, 865, 1067, 1107, 1486, 1557 |
| NheI | GCTAGC | 1 cut(s) | 274 |
| NlaIII | CATG | 6 cut(s) | 458, 736, 953, 1340, 1387, 1811 |
| NlaIV | GGNNCC | 4 cut(s) | 301, 441, 1127, 1372 |
| NmeAIII | GCCGAG | 2 cut(s) | 300, 318 |
| NmuCI | GTSAC | 1 cut(s) | 157 |
| NsiI | ATGCAT | 1 cut(s) | 779 |
| NspV | TTCGAA | 3 cut(s) | 903, 1286, 1497 |
| OliI | CACNNNNGTG | 1 cut(s) | 420 |
| PceI | AGGCCT | 1 cut(s) | 1663 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 345, 1355 |
| PdmI | GAANNNNTTC | 1 cut(s) | 495 |
| PfeI | GAWTC | 5 cut(s) | 376, 554, 1283, 1424, 1681 |
| PfoI | TCCNGGA | 1 cut(s) | 516 |
| PkrI | GCNGC | 3 cut(s) | 91, 1096, 1567 |
| PleI | GAGTC | 4 cut(s) | 164, 250, 878, 1810 |
| PpsI | GAGTC | 4 cut(s) | 164, 250, 878, 1810 |
| PpuMI | RGGWCCY | 2 cut(s) | 300, 439 |
| Psp5II | RGGWCCY | 2 cut(s) | 300, 439 |
| Psp6I | CCWGG | 1 cut(s) | 516 |
| PspGI | CCWGG | 1 cut(s) | 516 |
| PspN4I | GGNNCC | 4 cut(s) | 301, 441, 1127, 1372 |
| PspPI | GGNCC | 4 cut(s) | 300, 439, 917, 1333 |
| PspPPI | RGGWCCY | 2 cut(s) | 300, 439 |
| PstI | CTGCAG | 1 cut(s) | 1099 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1772 |
| PsuI | RGATCY | 2 cut(s) | 865, 1067 |
| PvuII | CAGCTG | 1 cut(s) | 1568 |
| RsaI | GTAC | 6 cut(s) | 52, 263, 696, 913, 1689, 1813 |
| RsaNI | GTAC | 6 cut(s) | 51, 262, 695, 912, 1688, 1812 |
| RseI | CAYNNNNRTG | 1 cut(s) | 420 |
| SaqAI | TTAA | 7 cut(s) | 309, 639, 816, 966, 1050, 1401, 1692 |
| SatI | GCNGC | 3 cut(s) | 90, 1095, 1566 |
| Sau3AI | GATC | 8 cut(s) | 451, 613, 735, 865, 1067, 1107, 1486, 1557 |
| Sau96I | GGNCC | 4 cut(s) | 300, 439, 917, 1333 |
| ScaI | AGTACT | 2 cut(s) | 52, 1689 |
| SchI | GAGTC | 4 cut(s) | 165, 251, 878, 1811 |
| ScrFI | CCNGG | 2 cut(s) | 518, 1207 |
| SduI | GDGCHC | 1 cut(s) | 1642 |
| SfaNI | GCATC | 4 cut(s) | 76, 764, 786, 1826 |
| SfcI | CTRYAG | 3 cut(s) | 1095, 1435, 1657 |
| SfuI | TTCGAA | 3 cut(s) | 903, 1286, 1497 |
| SinI | GGWCC | 3 cut(s) | 300, 439, 1333 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 420 |
| SmlI | CTYRAG | 1 cut(s) | 1191 |
| SmoI | CTYRAG | 1 cut(s) | 1191 |
| SseBI | AGGCCT | 1 cut(s) | 1663 |
| SsiI | CCGC | 2 cut(s) | 598, 684 |
| SspI | AATATT | 1 cut(s) | 100 |
| SspMI | CTAG | 7 cut(s) | 77, 275, 558, 921, 1266, 1416, 1779 |
| StuI | AGGCCT | 1 cut(s) | 1663 |
| StyD4I | CCNGG | 2 cut(s) | 516, 1205 |
| StyI | CCWWGG | 3 cut(s) | 500, 920, 1336 |
| TaaI | ACNGT | 9 cut(s) | 362, 433, 637, 694, 1130, 1347, 1363, 1439, 1658 |
| TaiI | ACGT | 2 cut(s) | 369, 1434 |
| TaqII | GACCGA | 1 cut(s) | 140 |
| TatI | WGTACW | 3 cut(s) | 50, 694, 1687 |
| TfiI | GAWTC | 5 cut(s) | 376, 554, 1283, 1424, 1681 |
| Tru1I | TTAA | 7 cut(s) | 309, 639, 816, 966, 1050, 1401, 1692 |
| Tru9I | TTAA | 7 cut(s) | 309, 639, 816, 966, 1050, 1401, 1692 |
| TscAI | CASTG | 2 cut(s) | 1661, 1740 |
| TseFI | GTSAC | 1 cut(s) | 157 |
| TseI | GCWGC | 3 cut(s) | 89, 1094, 1565 |
| Tsp45I | GTSAC | 1 cut(s) | 157 |
| TspDTI | ATGAA | 2 cut(s) | 921, 1009 |
| TspRI | CASTG | 2 cut(s) | 1661, 1740 |
| VpaK11BI | GGWCC | 3 cut(s) | 300, 439, 1333 |
| XapI | RAATTY | 6 cut(s) | 223, 401, 818, 1288, 1782, 1831 |
| XbaI | TCTAGA | 1 cut(s) | 1778 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1381 |
| XmaJI | CCTAGG | 1 cut(s) | 920 |
| XmiI | GTMKAC | 2 cut(s) | 351, 1434 |
| XmnI | GAANNNNTTC | 1 cut(s) | 495 |
| XspI | CTAG | 7 cut(s) | 77, 275, 558, 921, 1266, 1416, 1779 |
| ZraI | GACGTC | 1 cut(s) | 1432 |
| ZrmI | AGTACT | 2 cut(s) | 52, 1689 |
| Zsp2I | ATGCAT | 1 cut(s) | 779 |