Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Reverse (-)

24522773 .. 24556516

Gene Structure 33744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0234300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1791 bp

ATGGGCTCCTCCTCAACATGGCTGCTTCTTTTCTTTTTTGCTCCTATAGTAGTCTTAGACCAGCTTGTTGCTCCCAGCAGATCGAGGCAAATGGGTTTCTCAATATGGTTGCTTCTTTTCTTAATAATCTTAGACCTCCTTGTTGTTCCTACCTTAGCCCCTTGCTCTACGCCACATGACTTCTGCTATACATGTTCCAATACGGGCAGTTACACTAATGGCAGCATGTACGAACAAAACCTCAAAAGCCTCCTCTCCTCCTTCTCTTCCAGCCCTACCCAAAACCAAAACCAAGCTGACTCCGGCTTTTACAACTCTTCTCTCGGACAAGACTCCAACCAAGTGAATGCAATTGCATTGTGCAGAGGAGACCTCGGACTCGAAGCCTGTAGTAGCTGTCTCAAGAACAACACTGGCTATCTGTTGCGAACATGTTTGTATCAAAAGGAAGCAATCTTATGGGCCCCCCATTGTATGGTACGTTACTCGGACAACTTGATATTTGGTATTGAGAAAGATGATCCTAGTGTGTATATCCCTAGCCAAAATAATGTGCCAAACGACCAAGAGTACCAGCGGGTGCTTAATGAGTACGAGCGGGTGCTTCATCCCTTGTTGCAAAATTTAAGTGACAGAGCTGCTTCAGGGGATTCTGTTAAAAAGTACGCAGCAGGACAAGCACTGGATCCGGGAAGGGAAATGATATATGCACTTGTGCAGTGCACTCCGGATTTAGACAACCAAAATTGCAGTAATTGCCTTAAAAAGGCCATGTCTGATATTCCGGGCCATATTGGTGCAACGCAAGGAGGACGAGTTCTTAAACCGAGCTGTACTCTAAGGTATGAGGCCGGTCTTTTCTACGAGGCTACATCAAATTCAATAGTAAATGTTTCAACTCCGGTTACTCCAACAACTCCAGTAACTCCACCATCAGTTCCATCCAAGCAAGGAAAGAAGAGTAACACAAAAAAAACTATCATCATCATCATTGTGGTTGTGATTGCATTTGTTACCATGCTTTTCACCGGCATATGCATTTTCTCAAGAGTGAAGCAACAAAGGGGGAAACTTGAAAATGAATATGACTTTGAAATTATAAGATCTGCAACGGGTGACTTTTCTGATGCCAATAAGCTTGGACAAGGTGGATTTGGAGCTGTTTACAAGGGTATGTTAAACAGACAGCGTATTGCCGTGAAAAGGCTTTCTAAAAATTCTGAACAAGGTGATCGTGAATTTAAAAATGAAGTCATGTTACTTCCTCAACTTCAACACCAGAACTTGGTAAAATTAGTAGGCTTTTGCAAAAAAGGAAAGGAAAGGCTCCTCATTTATGAATTTGTACCTAATAGAAGCCTTAATCACTACATTGATCCAATCAATCATGAACATTTGGATTGGGAAACACGTTACAAAATCATAGGAGGAATTGTTCGTGGTCTTGTTTATCTTCATGAAGATTCTCGACTACGAGTTATTCACTGTGATCTCAAACTTAGCAACATTCTGCTGGATGGAGAGATGAACCCTAAAATTGCAGATTTTGGTAAAGCAAGATTTTTTGTCATGGGTCAAACTCAAGGAGATACAATGACCACTATTGGGACCAATGGATATATGGCACCAGAATATGTAATTCATGGCCGCTTTTCTGTCAAATCGGATGACTTCAGTTTCGGCATGTTAGTTCTTGAGATAGTTAGTGGTAAGAAGATTGGTATTTTCCGCAATGGTGAAAATGGAGAGGACCTTCTAAGCTATGTCAGTCTGGAAAAATTGGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

596

Amino Acids

66.41

Weight (kDa)

7.82

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	64 - 164	4e-21	Salt stress response/antifungal
Stress-antifung	PF01657	195 - 283	2.1e-12	Salt stress response/antifungal
Pkinase	PF00069	375 - 573	6.4e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	378 - 570	6e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1100
AccB1I	GGYRCC	1 cut(s)	1624
AccB7I	CCANNNNNTGG	2 cut(s)	475, 1285
AccBSI	CCGCTC	1 cut(s)	598
AccIII	TCCGGA	1 cut(s)	727
AciI	CCGC	4 cut(s)	577, 598, 1648, 1729
AclWI	GGATC	4 cut(s)	515, 680, 693, 1370
AcoI	YGGCCR	1 cut(s)	1645
AcsI	RAATTY	5 cut(s)	622, 877, 1216, 1238, 1340
AcuI	CTGAAG	2 cut(s)	627, 1657
AfaI	GTAC	7 cut(s)	230, 480, 572, 593, 665, 835, 1347
AfiI	CCNNNNNNNGG	6 cut(s)	18, 475, 766, 1203, 1285, 1605
AflIII	ACRYGT	3 cut(s)	191, 431, 1409
AgsI	TTSAA	5 cut(s)	882, 897, 1076, 1094, 1274
AloI	GAACNNNNNNTCC	4 cut(s)	801, 833, 1419, 1451
AluBI	AGCT	8 cut(s)	64, 296, 396, 638, 831, 1138, 1160, 1761
AluI	AGCT	8 cut(s)	64, 296, 396, 638, 831, 1138, 1160, 1761
Alw21I	GWGCWC	1 cut(s)	725
Alw26I	GTCTC	2 cut(s)	363, 404
Alw44I	GTGCAC	1 cut(s)	721
AlwI	GGATC	4 cut(s)	515, 680, 693, 1370
Aor13HI	TCCGGA	1 cut(s)	727
AoxI	GGCC	5 cut(s)	462, 768, 787, 849, 1645
ApaI	GGGCCC	1 cut(s)	466
ApaLI	GTGCAC	1 cut(s)	721
ApeKI	GCWGC	4 cut(s)	22, 222, 638, 668
ApoI	RAATTY	5 cut(s)	622, 877, 1216, 1238, 1340
ArsI	GACNNNNNNTTYG	2 cut(s)	1661, 1693
AspS9I	GGNCC	5 cut(s)	462, 463, 787, 1608, 1750
AsuC2I	CCSGG	2 cut(s)	690, 786
AsuHPI	GGTGA	4 cut(s)	1018, 1127, 1241, 1748
AvaII	GGWCC	2 cut(s)	1608, 1750
BaeGI	GKGCMC	2 cut(s)	466, 725
BamHI	GGATCC	1 cut(s)	685
BanI	GGYRCC	1 cut(s)	1624
BanII	GRGCYC	2 cut(s)	8, 466
BarI	GAAGNNNNNNTAC	2 cut(s)	1242, 1274
Bbv12I	GWGCWC	1 cut(s)	725
BbvI	GCAGC	4 cut(s)	9, 234, 625, 680
BccI	CCATC	3 cut(s)	940, 949, 1511
BceAI	ACGGC	1 cut(s)	1181
BcnI	CCSGG	2 cut(s)	690, 786
BcoDI	GTCTC	2 cut(s)	363, 404
BfaI	CTAG	2 cut(s)	525, 540
BfmI	CTRYAG	2 cut(s)	45, 388
BglII	AGATCT	1 cut(s)	1103
BisI	GCNGC	5 cut(s)	23, 223, 639, 669, 1648
BlsI	GCNGC	5 cut(s)	24, 224, 640, 670, 1649
Bme1390I	CCNGG	2 cut(s)	690, 786
Bme18I	GGWCC	2 cut(s)	1608, 1750
BmgT120I	GGNCC	5 cut(s)	462, 463, 787, 1608, 1750
BmiI	GGNNCC	7 cut(s)	7, 464, 465, 687, 1328, 1609, 1626
BmrFI	CCNGG	2 cut(s)	690, 786
BmsI	GCATC	1 cut(s)	1117
BplI	GAGNNNNNCTC	4 cut(s)	357, 389, 820, 852
BpmI	CTGGAG	1 cut(s)	903
Bpu10I	CCTNAGC	1 cut(s)	154
BpuEI	CTTGAG	4 cut(s)	386, 1030, 1566, 1715
BpuMI	CCSGG	2 cut(s)	690, 786
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	373
BsaWI	WCCGGW	2 cut(s)	727, 901
BsaXI	ACNNNNNCTCC	4 cut(s)	801, 831, 1419, 1449
Bsc4I	CCNNNNNNNGG	6 cut(s)	18, 475, 766, 1203, 1285, 1605
Bse118I	RCCGGY	2 cut(s)	851, 1028
Bse1I	ACTGG	3 cut(s)	418, 687, 920
Bse3DI	GCAATG	1 cut(s)	1738
BseAI	TCCGGA	1 cut(s)	727
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	4 cut(s)	607, 941, 1522, 1672
BseLI	CCNNNNNNNGG	6 cut(s)	18, 475, 766, 1203, 1285, 1605
BseMI	GCAATG	1 cut(s)	1738
BseNI	ACTGG	3 cut(s)	418, 687, 920
BseRI	GAGGAG	4 cut(s)	242, 247, 381, 1319
BseSI	GKGCMC	2 cut(s)	466, 725
BseXI	GCAGC	4 cut(s)	9, 234, 625, 680
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	2 cut(s)	382, 737
BshFI	GGCC	5 cut(s)	464, 770, 789, 851, 1647
BshNI	GGYRCC	1 cut(s)	1624
BsiHKAI	GWGCWC	1 cut(s)	725
BsiSI	CCGG	7 cut(s)	303, 689, 728, 785, 852, 902, 1029
BslFI	GGGAC	1 cut(s)	1621
BslI	CCNNNNNNNGG	6 cut(s)	18, 475, 766, 1203, 1285, 1605
BsmAI	GTCTC	2 cut(s)	363, 404
BsmFI	GGGAC	1 cut(s)	1621
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	5 cut(s)	464, 770, 789, 851, 1647
Bso31I	GGTCTC	1 cut(s)	363
Bsp120I	GGGCCC	1 cut(s)	462
Bsp1286I	GDGCHC	3 cut(s)	8, 466, 725
Bsp13I	TCCGGA	1 cut(s)	727
Bsp143I	GATC	7 cut(s)	80, 520, 685, 1103, 1231, 1375, 1489
BspACI	CCGC	4 cut(s)	577, 598, 1648, 1729
BspANI	GGCC	5 cut(s)	464, 770, 789, 851, 1647
BspEI	TCCGGA	1 cut(s)	727
BspHI	TCATGA	2 cut(s)	1387, 1456
BspLI	GGNNCC	7 cut(s)	7, 464, 465, 687, 1328, 1609, 1626
BspPI	GGATC	4 cut(s)	515, 680, 693, 1370
BspT107I	GGYRCC	1 cut(s)	1624
BspTNI	GGTCTC	1 cut(s)	363
BsrBI	CCGCTC	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	1738
BsrFI	RCCGGY	2 cut(s)	851, 1028
BsrI	ACTGG	3 cut(s)	418, 687, 920
BssAI	RCCGGY	2 cut(s)	851, 1028
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	7 cut(s)	80, 520, 685, 1103, 1231, 1375, 1489
Bst4CI	ACNGT	1 cut(s)	1487
Bst6I	CTCTTC	3 cut(s)	271, 322, 953
BstAPI	GCANNNNNTGC	1 cut(s)	756
BstDEI	CTNAG	6 cut(s)	55, 130, 154, 839, 1499, 1757
BstENI	CCTNNNNNAGG	1 cut(s)	764
BstF5I	GGATG	4 cut(s)	607, 941, 1522, 1672
BstKTI	GATC	7 cut(s)	83, 523, 688, 1106, 1234, 1378, 1492
BstMAI	GTCTC	2 cut(s)	363, 404
BstMBI	GATC	7 cut(s)	80, 520, 685, 1103, 1231, 1375, 1489
BstMWI	GCNNNNNNNGC	2 cut(s)	677, 756
BstNSI	RCATGY	4 cut(s)	195, 229, 435, 1687
BstSCI	CCNGG	2 cut(s)	688, 784
BstSFI	CTRYAG	2 cut(s)	45, 388
BstSLI	GKGCMC	2 cut(s)	466, 725
BstV1I	GCAGC	4 cut(s)	9, 234, 625, 680
BstX2I	RGATCY	2 cut(s)	685, 1103
BstYI	RGATCY	2 cut(s)	685, 1103
BsuRI	GGCC	5 cut(s)	464, 770, 789, 851, 1647
BtsCI	GGATG	4 cut(s)	607, 941, 1522, 1672
BtsI	GCAGTG	1 cut(s)	725
BtsIMutI	CAGTG	4 cut(s)	411, 680, 725, 1483
CciI	TCATGA	2 cut(s)	1387, 1456
Cfr10I	RCCGGY	2 cut(s)	851, 1028
Cfr13I	GGNCC	5 cut(s)	462, 463, 787, 1608, 1750
Csp6I	GTAC	7 cut(s)	229, 479, 571, 592, 664, 834, 1346
CviQI	GTAC	7 cut(s)	229, 479, 571, 592, 664, 834, 1346
DdeI	CTNAG	6 cut(s)	55, 130, 154, 839, 1499, 1757
DpnI	GATC	7 cut(s)	82, 522, 687, 1105, 1233, 1377, 1491
DpnII	GATC	7 cut(s)	80, 520, 685, 1103, 1231, 1375, 1489
DraI	TTTAAA	1 cut(s)	1243
EaeI	YGGCCR	1 cut(s)	1645
Eam1104I	CTCTTC	3 cut(s)	271, 322, 953
EarI	CTCTTC	3 cut(s)	271, 322, 953
Eco24I	GRGCYC	2 cut(s)	8, 466
Eco31I	GGTCTC	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	1608, 1750
Eco57I	CTGAAG	2 cut(s)	627, 1657
EcoNI	CCTNNNNNAGG	1 cut(s)	764
EcoO109I	RGGNCCY	2 cut(s)	463, 1750
EcoT22I	ATGCAT	1 cut(s)	1040
EcoT38I	GRGCYC	2 cut(s)	8, 466
FaqI	GGGAC	1 cut(s)	1621
FauI	CCCGC	2 cut(s)	570, 591
FauNDI	CATATG	1 cut(s)	1034
Fnu4HI	GCNGC	5 cut(s)	23, 223, 639, 669, 1648
FokI	GGATG	4 cut(s)	594, 928, 1529, 1679
FriOI	GRGCYC	2 cut(s)	8, 466
Fsp4HI	GCNGC	5 cut(s)	23, 223, 639, 669, 1648
FspBI	CTAG	2 cut(s)	525, 540
GluI	GCNGC	5 cut(s)	23, 223, 639, 669, 1648
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	903
HaeIII	GGCC	5 cut(s)	464, 770, 789, 851, 1647
HapII	CCGG	7 cut(s)	303, 689, 728, 785, 852, 902, 1029
HindIII	AAGCTT	1 cut(s)	1136
HinfI	GANTC	5 cut(s)	299, 332, 378, 650, 1463
HpaII	CCGG	7 cut(s)	303, 689, 728, 785, 852, 902, 1029
HphI	GGTGA	4 cut(s)	1018, 1127, 1241, 1748
Hpy166II	GTNNAC	2 cut(s)	723, 1165
Hpy188I	TCNGA	7 cut(s)	326, 377, 490, 778, 1126, 1222, 1666
Hpy188III	TCNNGA	9 cut(s)	403, 728, 1047, 1235, 1388, 1457, 1467, 1694, 1772
Hpy8I	GTNNAC	2 cut(s)	723, 1165
HpyAV	CCTTC	3 cut(s)	271, 687, 1763
HpyCH4III	ACNGT	1 cut(s)	1487
HpyCH4IV	ACGT	2 cut(s)	481, 1411
HpyF10VI	GCNNNNNNNGC	2 cut(s)	677, 756
HpyF3I	CTNAG	6 cut(s)	55, 130, 154, 839, 1499, 1757
HpySE526I	ACGT	2 cut(s)	481, 1411
Kpn2I	TCCGGA	1 cut(s)	727
Kzo9I	GATC	7 cut(s)	80, 520, 685, 1103, 1231, 1375, 1489
LmnI	GCTCC	5 cut(s)	11, 46, 76, 1157, 1332
Lsp1109I	GCAGC	4 cut(s)	9, 234, 625, 680
LweI	GCATC	1 cut(s)	1117
MaeI	CTAG	2 cut(s)	525, 540
MaeII	ACGT	2 cut(s)	481, 1411
MalI	GATC	7 cut(s)	82, 522, 687, 1105, 1233, 1377, 1491
MbiI	CCGCTC	1 cut(s)	598
MboI	GATC	7 cut(s)	80, 520, 685, 1103, 1231, 1375, 1489
MboII	GAAGA	6 cut(s)	258, 309, 970, 1445, 1472, 1726
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	2 cut(s)	685, 1103
MhlI	GDGCHC	3 cut(s)	8, 466, 725
MlyI	GAGTC	3 cut(s)	293, 326, 372
MmeI	TCCRAC	2 cut(s)	360, 935
Mph1103I	ATGCAT	1 cut(s)	1040
MroI	TCCGGA	1 cut(s)	727
MseI	TTAA	9 cut(s)	122, 585, 626, 657, 762, 822, 1178, 1242, 1362
MslI	CAYNNNNRTG	2 cut(s)	795, 992
MspA1I	CMGCKG	1 cut(s)	577
MspI	CCGG	7 cut(s)	303, 689, 728, 785, 852, 902, 1029
MspR9I	CCNGG	2 cut(s)	690, 786
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	1 cut(s)	352
MwoI	GCNNNNNNNGC	2 cut(s)	677, 756
NciI	CCSGG	2 cut(s)	690, 786
NdeI	CATATG	1 cut(s)	1034
NdeII	GATC	7 cut(s)	80, 520, 685, 1103, 1231, 1375, 1489
NlaIV	GGNNCC	7 cut(s)	7, 464, 465, 687, 1328, 1609, 1626
NmuCI	GTSAC	2 cut(s)	629, 1115
NsiI	ATGCAT	1 cut(s)	1040
NspI	RCATGY	4 cut(s)	195, 229, 435, 1687
PagI	TCATGA	2 cut(s)	1387, 1456
PciI	ACATGT	2 cut(s)	191, 431
PctI	GAATGC	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	650, 1463
PflMI	CCANNNNNTGG	2 cut(s)	475, 1285
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	5 cut(s)	24, 224, 640, 670, 1649
PleI	GAGTC	3 cut(s)	293, 326, 372
PpsI	GAGTC	3 cut(s)	293, 326, 372
PpuMI	RGGWCCY	1 cut(s)	1750
PscI	ACATGT	2 cut(s)	191, 431
PsiI	TTATAA	1 cut(s)	1100
Psp5II	RGGWCCY	1 cut(s)	1750
PspFI	CCCAGC	1 cut(s)	74
PspN4I	GGNNCC	7 cut(s)	7, 464, 465, 687, 1328, 1609, 1626
PspOMI	GGGCCC	1 cut(s)	462
PspPI	GGNCC	5 cut(s)	462, 463, 787, 1608, 1750
PspPPI	RGGWCCY	1 cut(s)	1750
PsuI	RGATCY	2 cut(s)	685, 1103
RsaI	GTAC	7 cut(s)	230, 480, 572, 593, 665, 835, 1347
RsaNI	GTAC	7 cut(s)	229, 479, 571, 592, 664, 834, 1346
RseI	CAYNNNNRTG	2 cut(s)	795, 992
SaqAI	TTAA	9 cut(s)	122, 585, 626, 657, 762, 822, 1178, 1242, 1362
SatI	GCNGC	5 cut(s)	23, 223, 639, 669, 1648
Sau3AI	GATC	7 cut(s)	80, 520, 685, 1103, 1231, 1375, 1489
Sau96I	GGNCC	5 cut(s)	462, 463, 787, 1608, 1750
SchI	GAGTC	3 cut(s)	293, 326, 372
ScrFI	CCNGG	2 cut(s)	690, 786
SduI	GDGCHC	3 cut(s)	8, 466, 725
SfaNI	GCATC	1 cut(s)	1117
SfcI	CTRYAG	2 cut(s)	45, 388
SinI	GGWCC	2 cut(s)	1608, 1750
SmiMI	CAYNNNNRTG	2 cut(s)	795, 992
SmlI	CTYRAG	4 cut(s)	401, 1045, 1581, 1694
SmoI	CTYRAG	4 cut(s)	401, 1045, 1581, 1694
SsiI	CCGC	4 cut(s)	577, 598, 1648, 1729
SspMI	CTAG	2 cut(s)	525, 540
StyD4I	CCNGG	2 cut(s)	688, 784
TaaI	ACNGT	1 cut(s)	1487
TaiI	ACGT	2 cut(s)	484, 1414
TaqI	TCGA	3 cut(s)	83, 381, 1468
TatI	WGTACW	1 cut(s)	833
TauI	GCSGC	1 cut(s)	1650
TfiI	GAWTC	2 cut(s)	650, 1463
Tru1I	TTAA	9 cut(s)	122, 585, 626, 657, 762, 822, 1178, 1242, 1362
Tru9I	TTAA	9 cut(s)	122, 585, 626, 657, 762, 822, 1178, 1242, 1362
TscAI	CASTG	4 cut(s)	418, 687, 725, 1490
TseFI	GTSAC	2 cut(s)	629, 1115
TseI	GCWGC	4 cut(s)	22, 222, 638, 668
Tsp45I	GTSAC	2 cut(s)	629, 1115
TspDTI	ATGAA	9 cut(s)	596, 1095, 1263, 1353, 1404, 1445, 1473, 1541, 1631
TspRI	CASTG	4 cut(s)	418, 687, 725, 1490
Van91I	CCANNNNNTGG	2 cut(s)	475, 1285
VneI	GTGCAC	1 cut(s)	721
VpaK11BI	GGWCC	2 cut(s)	1608, 1750
XagI	CCTNNNNNAGG	1 cut(s)	764
XapI	RAATTY	5 cut(s)	622, 877, 1216, 1238, 1340
XceI	RCATGY	4 cut(s)	195, 229, 435, 1687
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1618
XspI	CTAG	2 cut(s)	525, 540
Zsp2I	ATGCAT	1 cut(s)	1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.