Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Reverse (-)

43221203 .. 43225740

Gene Structure 4538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0259600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2691 bp

ATGCTCCTAAGAAAACAAGGAATACGTCATTTAGACGGATTCTGTAGCATTTACAATTTTTCTAAGAGGTTTTCATCCTCGCCAAATGGGCCTTCTTCTGGACTTGATGGGAAAGTTGATTCCTCTGACGGTGGGGTTAATTGTGTTAACCCGAGGAAAGTGGAGGGTGTGAGACAAGTGGTGGATGGTGTGTGCCAAGCCCTGGAGGGTGGTCCTTGGGGACCTGCCCTTGAGAATGCTCTATCTGCGCTTGACGAAAAACCTCAGTCCGACTTAGTTATTGGAGTCTTAAGGAGGCTGAAAGATGTCGGTCAAGCAATTAATTATTTTCGGTGGTGTGAGAAACAAACTGAGCAAGCACACTGTCCAGAAGTGTACAATTCACTTCTCCTGGTCATGGCCAGGAGTAGGAATTTTAATAGCTTGGAACAAGTTCTGGAAGAAATGAGTATTGCAGGAATTAGTCCATCAAATAATGCATGTGTTGAGTTAGTTGTGAGCTGTGTCAGGTCACAGAAACTGGGAGAAGCTTTTAATCTACTGCAAACCATGAGGAAGTTCAAATTCCGCCCAGCATTTTCAGCCTATTCAACTCTGATTGGAGCTCTGTCGACAATTCCTGAACCTGATCGAATGCTGACTCTCTTTCATCAAATGCAGGAGCTAGGTTATGAAGTCACCGTGCATTTATTTACAACTCTTATTCGTGTATTTGCCAAGGAAGGTCGAGTTGACGCTGCCCTCTCCTTGTTGGATGAGATGAAGAGCAACTTTTGTGATGCAGATATTGTTCTTTATAATGTGTGTATAGACTGCTTTGGCAAGATGGGTAAGGTGGATATGGCCTGGAAATTCTTTCATGAAATGAGAATGAACGGCTTGATGCCTGATGATGTGACATATACTAGCATGATAGGTGTTCTCTGCAAAGCTGAGAAACTAGACGAAGCTGTTAAGGTGTTTGAGGAGATGGATGCCAACAGGAAAGTACCTTGTGTGTATGCTTATAACACCATGATCATGGGCTATGGCTCTGCTGGAAAGTTCGATGAAGCATACAGCTTATTTGAGAGGCAAAAAAGAAAGGGGTGCATTCCGAGTGTAATTGCATATAATTGTGTTCTCACTTGCCTGGGGAAGAAGGGGAGATCTGAAGAAGCGTTGAGGGTTTTTAATGAGATGAAGACAGATGCAGCACCCAATATTTCAACATATAACATTTTAATAGACATGCTTTGCAAGGCAGGTAATGTTGAGGCTGCTCTGCGGGTTCAGGATGATATGAGAGAAGCTGGCTTATATCCTAATGTGATGACTGTAAACATAATGATTGATCGACTCTGTAAAGCACAGAAACTTGATGAAGCATGTTCTATATATGAAGGAATGGATCATAAAGTTTGCATGCCAGATGCAGTCACATTTTGTTCTCTTATAGATGGCTTGGGAAGACGTGGAAGAGTGAATGATGCCTATAGACTTCATGAAAAAATGCTAGATTCTGATCAGATTCCAAATGCTATAGCATACACATCTCTCATCAGGAACTTCTTCAAGTGTGGCAGGAAGGAGGATGGTCACAAAATATACAAAGAAATGGTGCGCAGGGGCTGCTCTCCTGACTTGATGCTCCTTAATACCTACATGGATTGTGTTTTCAAAGCTGGTGAAACAGACAAAGGTAGATCTTTGTTTGAGGAGATTAAGGCTCAAGGATTCATCCCTGATGTGAGGAGCTATTCAATCTTAATTCATGGCCTTGTCAAAGCAGGTTTTGCACATGAAACCTATAAATTATTTCATGCAATGAAAGAACAGGGTTGTGAATTGGACACTCGAGCTTACAATGCCGTCATTGATGGATTCTGCAAATGTGGAAAGGTGAATAAAGCATATCAGCTGCTGGAGGAAATGAAAACTAAGGGTCAGCAACCCACTGTTGTAACCTATGGTTCTTTGATTGATGGGCTTGCCAAGATTGATAGACTTGATGAAGCGTACATGCTTTTTGAAGAAGCAAAGTCGAAAGGAGTAGAATTGAATGTAGTTGTTTATAGTAGTCTTGTCGATGGATTTGGGAAGGTGGGGAGAATTGATGAAGCATATCTAATCATGGAAGAGTTGATGCAAAAAGGTTTGACACCTAACGTGTACACGTATAATTCCTTGCTCGATGCACTTGTGAAAGCTGGCGAAATTGATGAAGCCATTTTATGCTTTCAATCCATGAAGGATTTGAACTGTACACCCAACAGTTTTACTTATAATATTCTCATAAATGGTCTTTGTCGAGTTAGAAAATTCAACAAGGCTTTTGTATACTGGCAAGAAATGAAGAAACAGGGATTAAATCCCAACACAGTCACCTACTGTACCATGATCTCTGGACTTGCAAAAGCTGGGAACATAAGGGATGCTACTGGGCTTTTTGAAAGGTTTAAGGCTAGTGGTGGTATTCCAGATTCTGCTTGTTATAATGCTATGATAGAAGGTTTAAGCAGTGGAGATAAGGCAATGGAAGCATATGCACTTTTTGAGGAAACTCGGCGGAAAGGCTGTAGTATTAATACCAAGACATGTGTTGTTTTATTGGACGCACTGCACAAGGCTGAATGCCTTGAACAGGCAGCAATAGTGGGTGCTGTACTGAGGGAAACTGCAAAGTCTCAGCATGCATCAAGATCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

896

Amino Acids

100.04

Weight (kDa)

6.7

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	99 - 256	2.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	215 - 276	2.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	223 - 255	2.6e-06	PPR repeat
PPR	PF01535	231 - 256	8.1e-06	PPR repeat
PPR_long	PF17177	246 - 382	4.9e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	262 - 310	3.1e-16	PPR repeat family
PPR	PF01535	264 - 294	1.3e-06	PPR repeat
TPR_24	PF23276	266 - 357	3.4e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	286 - 344	3.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	292 - 324	3.9e-12	PPR repeat
PPR_2	PF13041	296 - 325	3.5e-07	PPR repeat family
PPR	PF01535	299 - 325	7.8e-08	PPR repeat
PPR_2	PF13041	331 - 368	3.1e-08	PPR repeat family
PPR_3	PF13812	333 - 380	5.7e-06	Pentatricopeptide repeat domain
PPR	PF01535	335 - 364	4.2e-07	PPR repeat
PPR_3	PF13812	355 - 412	1.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	362 - 395	3.8e-07	PPR repeat
PPR_2	PF13041	366 - 396	1.3e-07	PPR repeat family
PPR	PF01535	370 - 396	3.4e-06	PPR repeat
TPR_24	PF23276	374 - 496	1.5e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	378 - 524	5.2e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	390 - 445	1.4e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	400 - 449	4.2e-16	PPR repeat family
PPR_1	PF12854	400 - 429	1.4e-09	PPR repeat
PPR	PF01535	403 - 433	1.2e-06	PPR repeat
PPR_1	PF12854	432 - 463	7.4e-07	PPR repeat
PPR_2	PF13041	435 - 483	3.7e-12	PPR repeat family
PPR_1	PF12854	468 - 498	1.7e-09	PPR repeat
PPR_2	PF13041	470 - 519	1.2e-09	PPR repeat family
PPR_2	PF13041	505 - 541	4.7e-08	PPR repeat family
PPR_long	PF17177	524 - 649	3.5e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	545 - 589	1.7e-08	PPR repeat family
PPR_2	PF13041	582 - 621	3.3e-06	PPR repeat family
PPR_3	PF13812	598 - 655	1.9e-09	Pentatricopeptide repeat domain
TPR_24	PF23276	600 - 701	3.6e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	607 - 639	1.1e-12	PPR repeat
PPR_2	PF13041	611 - 659	1.7e-17	PPR repeat family
PPR	PF01535	614 - 642	2.4e-08	PPR repeat
PPR_1	PF12854	641 - 672	3.2e-08	PPR repeat
PPR_2	PF13041	645 - 694	1e-11	PPR repeat family
PPR	PF01535	648 - 678	5.4e-06	PPR repeat
PPR_long	PF17177	661 - 758	8.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	669 - 729	5.3e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	676 - 707	5e-07	PPR repeat
PPR_2	PF13041	681 - 729	2.7e-12	PPR repeat family
PPR_3	PF13812	704 - 760	4e-12	Pentatricopeptide repeat domain
TPR_24	PF23276	706 - 812	1.8e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	711 - 744	7.5e-08	PPR repeat
PPR	PF01535	718 - 748	1e-06	PPR repeat
PPR_2	PF13041	719 - 764	6.9e-17	PPR repeat family
PPR_1	PF12854	747 - 779	7e-10	PPR repeat
PPR	PF01535	753 - 783	4.4e-07	PPR repeat
PPR_2	PF13041	755 - 799	1e-15	PPR repeat family
PPR_3	PF13812	776 - 830	2.9e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	782 - 811	8.3e-09	PPR repeat
PPR_2	PF13041	785 - 833	2.1e-09	PPR repeat family
PPR_2	PF13041	820 - 869	1.6e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	798, 1008, 2265, 2475
Acc16I	TGCGCA	1 cut(s)	1604
Acc36I	ACCTGC	3 cut(s)	232, 1235, 1760
AccB7I	CCANNNNNTGG	1 cut(s)	202
AccI	GTMKAC	2 cut(s)	611, 2319
AciI	CCGC	3 cut(s)	568, 1267, 2548
AclWI	GGATC	1 cut(s)	1398
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	4 cut(s)	412, 563, 851, 2300
AcuI	CTGAAG	1 cut(s)	1173
AfaI	GTAC	7 cut(s)	377, 990, 2000, 2153, 2245, 2374, 2646
AfiI	CCNNNNNNNGG	5 cut(s)	98, 202, 397, 408, 2623
AflII	CTTAAG	1 cut(s)	289
AflIII	ACRYGT	3 cut(s)	2148, 2154, 2576
AjiI	CACGTC	1 cut(s)	1454
AjnI	CCWGG	5 cut(s)	201, 390, 401, 845, 1131
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	2 cut(s)	166, 2670
AlwI	GGATC	1 cut(s)	1398
AlwNI	CAGNNNCTG	4 cut(s)	520, 1611, 1903, 2465
Ama87I	CYCGRG	2 cut(s)	151, 1836
AoxI	GGCC	4 cut(s)	89, 399, 843, 1756
ApeKI	GCWGC	6 cut(s)	737, 1193, 1259, 1611, 1900, 2627
ApoI	RAATTY	4 cut(s)	412, 563, 851, 2300
AseI	ATTAAT	2 cut(s)	321, 2565
Asp700I	GAANNNNTTC	2 cut(s)	432, 1550
AspLEI	GCGC	2 cut(s)	250, 1605
AspS9I	GGNCC	3 cut(s)	89, 212, 221
AsuHPI	GGTGA	4 cut(s)	670, 1679, 1894, 2356
AvaI	CYCGRG	2 cut(s)	151, 1836
AvaII	GGWCC	2 cut(s)	212, 221
BalI	TGGCCA	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	607
BbsI	GAAGAC	2 cut(s)	1190, 1456
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	6 cut(s)	724, 1205, 1246, 1598, 1887, 2639
BceAI	ACGGC	2 cut(s)	892, 1835
BciT130I	CCWGG	5 cut(s)	203, 392, 403, 847, 1133
BclI	TGATCA	2 cut(s)	1017, 1504
BcoDI	GTCTC	2 cut(s)	166, 2670
BfaI	CTAG	5 cut(s)	665, 906, 941, 1496, 2445
BfmI	CTRYAG	4 cut(s)	43, 1474, 1521, 2557
BfrI	CTTAAG	1 cut(s)	289
BfuAI	ACCTGC	3 cut(s)	232, 1235, 1760
BglI	GCCNNNNNGGC	1 cut(s)	88
BglII	AGATCT	2 cut(s)	1148, 1685
BisI	GCNGC	6 cut(s)	738, 1194, 1260, 1612, 1901, 2628
BlsI	GCNGC	6 cut(s)	739, 1195, 1261, 1613, 1902, 2629
Bme1390I	CCNGG	5 cut(s)	203, 392, 403, 847, 1133
Bme18I	GGWCC	2 cut(s)	212, 221
BmeT110I	CYCGRG	2 cut(s)	151, 1836
BmgBI	CACGTC	1 cut(s)	1454
BmgT120I	GGNCC	3 cut(s)	89, 212, 221
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	5 cut(s)	203, 392, 403, 847, 1133
BmrI	ACTGGG	2 cut(s)	530, 2430
BmuI	ACTGGG	2 cut(s)	530, 2430
BpiI	GAAGAC	2 cut(s)	1190, 1456
BpmI	CTGGAG	2 cut(s)	224, 1925
BpuEI	CTTGAG	2 cut(s)	251, 1695
BsaAI	YACGTR	1 cut(s)	2157
BsaBI	GATNNNNATC	1 cut(s)	1503
BsaJI	CCNNGG	5 cut(s)	152, 201, 215, 717, 1132
Bsc4I	CCNNNNNNNGG	5 cut(s)	98, 202, 397, 408, 2623
Bse1I	ACTGG	3 cut(s)	525, 2327, 2425
Bse3DI	GCAATG	2 cut(s)	1812, 2520
Bse8I	GATNNNNATC	1 cut(s)	1503
BseBI	CCWGG	5 cut(s)	203, 392, 403, 847, 1133
BseDI	CCNNGG	5 cut(s)	152, 201, 215, 717, 1132
BseGI	GGATG	8 cut(s)	74, 190, 760, 979, 1282, 1579, 1719, 2419
BseJI	GATNNNNATC	1 cut(s)	1503
BseLI	CCNNNNNNNGG	5 cut(s)	98, 202, 397, 408, 2623
BseMI	GCAATG	2 cut(s)	1812, 2520
BseMII	CTCAG	5 cut(s)	278, 342, 924, 2639, 2681
BseNI	ACTGG	3 cut(s)	525, 2327, 2425
BseRI	GAGGAG	3 cut(s)	980, 1712, 1747
BseXI	GCAGC	6 cut(s)	724, 1205, 1246, 1598, 1887, 2639
BseYI	CCCAGC	2 cut(s)	571, 2399
BsgI	GTGCAG	1 cut(s)	2585
BshFI	GGCC	4 cut(s)	91, 401, 845, 1758
BsiHKAI	GWGCWC	1 cut(s)	607
BsiHKCI	CYCGRG	2 cut(s)	151, 1836
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	5 cut(s)	98, 202, 397, 408, 2623
BsmAI	GTCTC	2 cut(s)	166, 2670
BsmFI	GGGAC	1 cut(s)	234
BsmI	GAATGC	4 cut(s)	241, 639, 1092, 2618
BsnI	GGCC	4 cut(s)	91, 401, 845, 1758
BsoBI	CYCGRG	2 cut(s)	151, 1836
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp1407I	TGTACA	3 cut(s)	375, 2151, 2243
Bsp143I	GATC	9 cut(s)	628, 1017, 1148, 1333, 1390, 1504, 1685, 2379, 2681
BspACI	CCGC	3 cut(s)	568, 1267, 2548
BspANI	GGCC	4 cut(s)	91, 401, 845, 1758
BspCNI	CTCAG	5 cut(s)	277, 343, 925, 2640, 2680
BspHI	TCATGA	2 cut(s)	859, 1483
BspLI	GGNNCC	1 cut(s)	222
BspMI	ACCTGC	3 cut(s)	232, 1235, 1760
BspPI	GGATC	1 cut(s)	1398
BspQI	GCTCTTC	1 cut(s)	758
BspTI	CTTAAG	1 cut(s)	289
BsrDI	GCAATG	2 cut(s)	1812, 2520
BsrGI	TGTACA	3 cut(s)	375, 2151, 2243
BsrI	ACTGG	3 cut(s)	525, 2327, 2425
BssECI	CCNNGG	5 cut(s)	152, 201, 215, 717, 1132
BssMI	GATC	9 cut(s)	628, 1017, 1148, 1333, 1390, 1504, 1685, 2379, 2681
BssNAI	GTATAC	1 cut(s)	2320
BssT1I	CCWWGG	2 cut(s)	215, 717
Bst1107I	GTATAC	1 cut(s)	2320
Bst2UI	CCWGG	5 cut(s)	203, 392, 403, 847, 1133
Bst4CI	ACNGT	9 cut(s)	131, 365, 682, 1318, 1939, 2243, 2255, 2362, 2372
Bst6I	CTCTTC	3 cut(s)	758, 1453, 2112
BstAFI	CTTAAG	1 cut(s)	289
BstAPI	GCANNNNNTGC	2 cut(s)	1611, 1775
BstAUI	TGTACA	3 cut(s)	375, 2151, 2243
BstBAI	YACGTR	1 cut(s)	2157
BstC8I	GCNNGC	6 cut(s)	357, 1294, 1406, 1971, 2191, 2673
BstDEI	CTNAG	9 cut(s)	8, 63, 264, 274, 351, 933, 1920, 2648, 2667
BstENI	CCTNNNNNAGG	1 cut(s)	2621
BstF5I	GGATG	8 cut(s)	74, 190, 760, 979, 1282, 1579, 1719, 2419
BstHHI	GCGC	2 cut(s)	250, 1605
BstKTI	GATC	9 cut(s)	631, 1020, 1151, 1336, 1393, 1507, 1688, 2382, 2684
BstMAI	GTCTC	2 cut(s)	166, 2670
BstMBI	GATC	9 cut(s)	628, 1017, 1148, 1333, 1390, 1504, 1685, 2379, 2681
BstMWI	GCNNNNNNNGC	7 cut(s)	88, 245, 581, 1611, 1775, 1847, 2519
BstNI	CCWGG	5 cut(s)	203, 392, 403, 847, 1133
BstNSI	RCATGY	7 cut(s)	483, 1234, 1371, 1408, 2005, 2580, 2675
BstSCI	CCNGG	5 cut(s)	201, 390, 401, 845, 1131
BstSFI	CTRYAG	4 cut(s)	43, 1474, 1521, 2557
BstV1I	GCAGC	6 cut(s)	724, 1205, 1246, 1598, 1887, 2639
BstV2I	GAAGAC	2 cut(s)	1190, 1456
BstX2I	RGATCY	2 cut(s)	1148, 1685
BstXI	CCANNNNNNTGG	1 cut(s)	1021
BstYI	RGATCY	2 cut(s)	1148, 1685
BstZ17I	GTATAC	1 cut(s)	2320
BsuRI	GGCC	4 cut(s)	91, 401, 845, 1758
BtrI	CACGTC	1 cut(s)	1454
BtsCI	GGATG	8 cut(s)	74, 190, 760, 979, 1282, 1579, 1719, 2419
BtsI	GCAGTG	2 cut(s)	2506, 2597
BtsIMutI	CAGTG	4 cut(s)	361, 1935, 2506, 2597
BveI	ACCTGC	3 cut(s)	232, 1235, 1760
Cac8I	GCNNGC	6 cut(s)	357, 1294, 1406, 1971, 2191, 2673
CaiI	CAGNNNCTG	4 cut(s)	520, 1611, 1903, 2465
CciI	TCATGA	2 cut(s)	859, 1483
CfoI	GCGC	2 cut(s)	250, 1605
Cfr13I	GGNCC	3 cut(s)	89, 212, 221
CseI	GACGC	2 cut(s)	743, 2603
Csp6I	GTAC	7 cut(s)	376, 989, 1999, 2152, 2244, 2373, 2645
CviQI	GTAC	7 cut(s)	376, 989, 1999, 2152, 2244, 2373, 2645
DdeI	CTNAG	9 cut(s)	8, 63, 264, 274, 351, 933, 1920, 2648, 2667
DpnI	GATC	9 cut(s)	630, 1019, 1150, 1335, 1392, 1506, 1687, 2381, 2683
DpnII	GATC	9 cut(s)	628, 1017, 1148, 1333, 1390, 1504, 1685, 2379, 2681
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	3 cut(s)	758, 1453, 2112
EarI	CTCTTC	3 cut(s)	758, 1453, 2112
EciI	GGCGGA	2 cut(s)	557, 2563
Ecl136II	GAGCTC	1 cut(s)	605
Eco130I	CCWWGG	2 cut(s)	215, 717
Eco24I	GRGCYC	1 cut(s)	607
Eco47I	GGWCC	2 cut(s)	212, 221
Eco53kI	GAGCTC	1 cut(s)	605
Eco57I	CTGAAG	1 cut(s)	1173
Eco88I	CYCGRG	2 cut(s)	151, 1836
EcoICRI	GAGCTC	1 cut(s)	605
EcoNI	CCTNNNNNAGG	1 cut(s)	2621
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRII	CCWGG	5 cut(s)	201, 390, 401, 845, 1131
EcoT14I	CCWWGG	2 cut(s)	215, 717
EcoT22I	ATGCAT	2 cut(s)	481, 2677
EcoT38I	GRGCYC	1 cut(s)	607
ErhI	CCWWGG	2 cut(s)	215, 717
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FaqI	GGGAC	1 cut(s)	234
FauI	CCCGC	1 cut(s)	1260
FauNDI	CATATG	1 cut(s)	2524
FbaI	TGATCA	2 cut(s)	1017, 1504
FblI	GTMKAC	2 cut(s)	611, 2319
Fnu4HI	GCNGC	6 cut(s)	738, 1194, 1260, 1612, 1901, 2628
FokI	GGATG	8 cut(s)	61, 197, 767, 986, 1289, 1586, 1706, 2426
FriOI	GRGCYC	1 cut(s)	607
Fsp4HI	GCNGC	6 cut(s)	738, 1194, 1260, 1612, 1901, 2628
FspBI	CTAG	5 cut(s)	665, 906, 941, 1496, 2445
FspI	TGCGCA	1 cut(s)	1604
GlaI	GCGC	2 cut(s)	249, 1604
GluI	GCNGC	6 cut(s)	738, 1194, 1260, 1612, 1901, 2628
GsaI	CCCAGC	2 cut(s)	575, 2403
GsuI	CTGGAG	2 cut(s)	224, 1925
HaeIII	GGCC	4 cut(s)	91, 401, 845, 1758
HgaI	GACGC	2 cut(s)	743, 2603
HhaI	GCGC	2 cut(s)	250, 1605
Hin6I	GCGC	2 cut(s)	248, 1603
HinP1I	GCGC	2 cut(s)	248, 1603
HincII	GTYRAC	3 cut(s)	148, 612, 733
HindII	GTYRAC	3 cut(s)	148, 612, 733
HindIII	AAGCTT	1 cut(s)	528
HpaI	GTTAAC	1 cut(s)	148
HphI	GGTGA	4 cut(s)	670, 1679, 1894, 2356
Hpy166II	GTNNAC	9 cut(s)	148, 376, 612, 733, 1321, 2152, 2154, 2246, 2320
Hpy188I	TCNGA	7 cut(s)	127, 271, 597, 1098, 1153, 1504, 1509
Hpy8I	GTNNAC	9 cut(s)	148, 376, 612, 733, 1321, 2152, 2154, 2246, 2320
HpyAV	CCTTC	8 cut(s)	102, 716, 1135, 1376, 1561, 2074, 2224, 2483
HpyCH4III	ACNGT	9 cut(s)	131, 365, 682, 1318, 1939, 2243, 2255, 2362, 2372
HpyCH4IV	ACGT	4 cut(s)	25, 1453, 2148, 2156
HpyF10VI	GCNNNNNNNGC	7 cut(s)	88, 245, 581, 1611, 1775, 1847, 2519
HpyF3I	CTNAG	9 cut(s)	8, 63, 264, 274, 351, 933, 1920, 2648, 2667
HpySE526I	ACGT	4 cut(s)	25, 1453, 2148, 2156
HspAI	GCGC	2 cut(s)	248, 1603
Ksp22I	TGATCA	2 cut(s)	1017, 1504
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	9 cut(s)	628, 1017, 1148, 1333, 1390, 1504, 1685, 2379, 2681
LguI	GCTCTTC	1 cut(s)	758
LmnI	GCTCC	5 cut(s)	9, 602, 661, 1635, 1734
Lsp1109I	GCAGC	6 cut(s)	724, 1205, 1246, 1598, 1887, 2639
MaeI	CTAG	5 cut(s)	665, 906, 941, 1496, 2445
MaeII	ACGT	4 cut(s)	25, 1453, 2148, 2156
MaeIII	GTNAC	7 cut(s)	510, 676, 895, 1417, 1577, 1942, 2362
MalI	GATC	9 cut(s)	630, 1019, 1150, 1335, 1392, 1506, 1687, 2381, 2683
MboI	GATC	9 cut(s)	628, 1017, 1148, 1333, 1390, 1504, 1685, 2379, 2681
MflI	RGATCY	2 cut(s)	1148, 1685
MhlI	GDGCHC	1 cut(s)	607
MlsI	TGGCCA	1 cut(s)	401
MluNI	TGGCCA	1 cut(s)	401
MlyI	GAGTC	3 cut(s)	294, 634, 1332
MmeI	TCCRAC	2 cut(s)	294, 732
Mox20I	TGGCCA	1 cut(s)	401
Mph1103I	ATGCAT	2 cut(s)	481, 2677
MroXI	GAANNNNTTC	2 cut(s)	432, 1550
MscI	TGGCCA	1 cut(s)	401
MslI	CAYNNNNRTG	1 cut(s)	1019
Msp20I	TGGCCA	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	1900
MspCI	CTTAAG	1 cut(s)	289
MspR9I	CCNGG	5 cut(s)	203, 392, 403, 847, 1133
Mva1269I	GAATGC	4 cut(s)	241, 639, 1092, 2618
MvaI	CCWGG	5 cut(s)	203, 392, 403, 847, 1133
MwoI	GCNNNNNNNGC	7 cut(s)	88, 245, 581, 1611, 1775, 1847, 2519
NdeI	CATATG	1 cut(s)	2524
NdeII	GATC	9 cut(s)	628, 1017, 1148, 1333, 1390, 1504, 1685, 2379, 2681
NlaIV	GGNNCC	1 cut(s)	222
NmeAIII	GCCGAG	1 cut(s)	2524
NmuCI	GTSAC	6 cut(s)	510, 676, 895, 1417, 1577, 2362
NsbI	TGCGCA	1 cut(s)	1604
NsiI	ATGCAT	2 cut(s)	481, 2677
NspI	RCATGY	7 cut(s)	483, 1234, 1371, 1408, 2005, 2580, 2675
PaeI	GCATGC	2 cut(s)	1408, 2675
PaeR7I	CTCGAG	1 cut(s)	1836
PagI	TCATGA	2 cut(s)	859, 1483
PciI	ACATGT	1 cut(s)	2576
PciSI	GCTCTTC	1 cut(s)	758
PctI	GAATGC	4 cut(s)	241, 639, 1092, 2618
PdmI	GAANNNNTTC	2 cut(s)	432, 1550
PfeI	GAWTC	7 cut(s)	39, 119, 1499, 1510, 1716, 1863, 2462
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	6 cut(s)	739, 1195, 1261, 1613, 1902, 2629
PleI	GAGTC	3 cut(s)	293, 634, 1332
PpsI	GAGTC	3 cut(s)	293, 634, 1332
Ppu21I	YACGTR	1 cut(s)	2157
PpuMI	RGGWCCY	1 cut(s)	221
PscI	ACATGT	1 cut(s)	2576
PshBI	ATTAAT	2 cut(s)	321, 2565
PsiI	TTATAA	4 cut(s)	798, 1008, 2265, 2475
Psp124BI	GAGCTC	1 cut(s)	607
Psp5II	RGGWCCY	1 cut(s)	221
Psp6I	CCWGG	5 cut(s)	201, 390, 401, 845, 1131
PspFI	CCCAGC	2 cut(s)	571, 2399
PspGI	CCWGG	5 cut(s)	201, 390, 401, 845, 1131
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	3 cut(s)	89, 212, 221
PspPPI	RGGWCCY	1 cut(s)	221
PspXI	VCTCGAGB	1 cut(s)	1836
PstNI	CAGNNNCTG	4 cut(s)	520, 1611, 1903, 2465
PsuI	RGATCY	2 cut(s)	1148, 1685
PvuII	CAGCTG	1 cut(s)	1900
RsaI	GTAC	7 cut(s)	377, 990, 2000, 2153, 2245, 2374, 2646
RsaNI	GTAC	7 cut(s)	376, 989, 1999, 2152, 2244, 2373, 2645
RseI	CAYNNNNRTG	1 cut(s)	1019
SacI	GAGCTC	1 cut(s)	607
SalI	GTCGAC	1 cut(s)	610
SapI	GCTCTTC	1 cut(s)	758
SatI	GCNGC	6 cut(s)	738, 1194, 1260, 1612, 1901, 2628
Sau3AI	GATC	9 cut(s)	628, 1017, 1148, 1333, 1390, 1504, 1685, 2379, 2681
Sau96I	GGNCC	3 cut(s)	89, 212, 221
SchI	GAGTC	3 cut(s)	294, 634, 1332
ScrFI	CCNGG	5 cut(s)	203, 392, 403, 847, 1133
SduI	GDGCHC	1 cut(s)	607
SfcI	CTRYAG	4 cut(s)	43, 1474, 1521, 2557
Sfr274I	CTCGAG	1 cut(s)	1836
SinI	GGWCC	2 cut(s)	212, 221
SlaI	CTCGAG	1 cut(s)	1836
SmiMI	CAYNNNNRTG	1 cut(s)	1019
SmlI	CTYRAG	4 cut(s)	230, 289, 1710, 1836
SmoI	CTYRAG	4 cut(s)	230, 289, 1710, 1836
SphI	GCATGC	2 cut(s)	1408, 2675
SsiI	CCGC	3 cut(s)	568, 1267, 2548
SspI	AATATT	2 cut(s)	1204, 2269
SspMI	CTAG	5 cut(s)	665, 906, 941, 1496, 2445
SstI	GAGCTC	1 cut(s)	607
StyD4I	CCNGG	5 cut(s)	201, 390, 401, 845, 1131
StyI	CCWWGG	2 cut(s)	215, 717
TaaI	ACNGT	9 cut(s)	131, 365, 682, 1318, 1939, 2243, 2255, 2362, 2372
TaiI	ACGT	4 cut(s)	28, 1456, 2151, 2159
TaqII	GACCGA	1 cut(s)	299
TatI	WGTACW	4 cut(s)	375, 2151, 2243, 2644
TfiI	GAWTC	7 cut(s)	39, 119, 1499, 1510, 1716, 1863, 2462
TscAI	CASTG	4 cut(s)	368, 1942, 2506, 2604
TseFI	GTSAC	6 cut(s)	510, 676, 895, 1417, 1577, 2362
TseI	GCWGC	6 cut(s)	737, 1193, 1259, 1611, 1900, 2627
Tsp45I	GTSAC	6 cut(s)	510, 676, 895, 1417, 1577, 2362
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	4 cut(s)	368, 1942, 2506, 2604
Van91I	CCANNNNNTGG	1 cut(s)	202
Vha464I	CTTAAG	1 cut(s)	289
VpaK11BI	GGWCC	2 cut(s)	212, 221
VspI	ATTAAT	2 cut(s)	321, 2565
XagI	CCTNNNNNAGG	1 cut(s)	2621
XapI	RAATTY	4 cut(s)	412, 563, 851, 2300
XceI	RCATGY	7 cut(s)	483, 1234, 1371, 1408, 2005, 2580, 2675
XhoI	CTCGAG	1 cut(s)	1836
XmiI	GTMKAC	2 cut(s)	611, 2319
XmnI	GAANNNNTTC	2 cut(s)	432, 1550
XspI	CTAG	5 cut(s)	665, 906, 941, 1496, 2445
Zsp2I	ATGCAT	2 cut(s)	481, 2677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.