Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ABC_trans_N | PF14510 | 88 - 138 | 8.5e-06 | ABC-transporter N-terminal |
| ABC_tran | PF00005 | 163 - 346 | 4.5e-17 | ABC transporter |
| ABC2_membrane | PF01061 | 500 - 712 | 1.1e-47 | ABC-2 type transporter |
| PDR_assoc | PF08370 | 717 - 779 | 4.2e-22 | Plant PDR ABC transporter associated |
| ABC_tran | PF00005 | 840 - 992 | 6.8e-21 | ABC transporter |
| ABC2_membrane | PF01061 | 1137 - 1351 | 3.1e-54 | ABC-2 type transporter |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 104 |
| AccBSI | CCGCTC | 1 cut(s) | 1264 |
| AccI | GTMKAC | 3 cut(s) | 1554, 3610, 3774 |
| AciI | CCGC | 3 cut(s) | 301, 343, 1264 |
| AclWI | GGATC | 8 cut(s) | 1807, 1820, 1871, 2306, 2654, 3537, 3724, 3739 |
| AcoI | YGGCCR | 2 cut(s) | 3501, 3879 |
| AcuI | CTGAAG | 4 cut(s) | 357, 1395, 2285, 2540 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 56, 551, 1291, 2975, 3641, 3785 |
| AflIII | ACRYGT | 1 cut(s) | 2155 |
| AjnI | CCWGG | 4 cut(s) | 544, 2545, 2875, 3230 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 221, 253, 3120, 3152, 3255, 3287, 3376, 3408 |
| AleI | CACNNNNGTG | 1 cut(s) | 3473 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1751, 1783 |
| Alw21I | GWGCWC | 1 cut(s) | 3600 |
| Alw26I | GTCTC | 7 cut(s) | 46, 109, 466, 1142, 2146, 2894, 3472 |
| AlwI | GGATC | 8 cut(s) | 1807, 1820, 1871, 2306, 2654, 3537, 3724, 3739 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3680 |
| Ama87I | CYCGRG | 3 cut(s) | 155, 2499, 2781 |
| ApaI | GGGCCC | 1 cut(s) | 543 |
| AseI | ATTAAT | 2 cut(s) | 420, 1121 |
| AspS9I | GGNCC | 8 cut(s) | 298, 539, 540, 758, 1007, 1208, 1759, 3140 |
| AsuC2I | CCSGG | 3 cut(s) | 2782, 2783, 3037 |
| AvaI | CYCGRG | 3 cut(s) | 155, 2499, 2781 |
| AvaII | GGWCC | 5 cut(s) | 298, 758, 1007, 1208, 1759 |
| AxyI | CCTNAGG | 1 cut(s) | 2472 |
| BaeGI | GKGCMC | 2 cut(s) | 543, 1966 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2288, 2321 |
| BalI | TGGCCA | 1 cut(s) | 3881 |
| BamHI | GGATCC | 1 cut(s) | 1812 |
| BanI | GGYRCC | 1 cut(s) | 104 |
| BanII | GRGCYC | 2 cut(s) | 543, 1330 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1232, 1264, 3827, 3859 |
| BbsI | GAAGAC | 2 cut(s) | 236, 2627 |
| Bbv12I | GWGCWC | 1 cut(s) | 3600 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 136, 170, 902, 936 |
| BciT130I | CCWGG | 4 cut(s) | 546, 2547, 2877, 3232 |
| BciVI | GTATCC | 1 cut(s) | 2693 |
| BclI | TGATCA | 2 cut(s) | 12, 1848 |
| BcnI | CCSGG | 3 cut(s) | 2782, 2783, 3037 |
| BcoDI | GTCTC | 7 cut(s) | 46, 109, 466, 1142, 2146, 2894, 3472 |
| BfmI | CTRYAG | 6 cut(s) | 1133, 1861, 3045, 3471, 3909, 4089 |
| BfuI | GTATCC | 1 cut(s) | 2693 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3147 |
| BglII | AGATCT | 2 cut(s) | 820, 3559 |
| BmcAI | AGTACT | 3 cut(s) | 1020, 2337, 3349 |
| Bme1390I | CCNGG | 7 cut(s) | 546, 2547, 2782, 2783, 2877, 3037, 3232 |
| Bme18I | GGWCC | 5 cut(s) | 298, 758, 1007, 1208, 1759 |
| BmeT110I | CYCGRG | 3 cut(s) | 155, 2499, 2781 |
| BmgT120I | GGNCC | 8 cut(s) | 298, 539, 540, 758, 1007, 1208, 1759, 3140 |
| BmiI | GGNNCC | 9 cut(s) | 106, 437, 541, 542, 1210, 1760, 1814, 2771, 3538 |
| BmrFI | CCNGG | 7 cut(s) | 546, 2547, 2782, 2783, 2877, 3037, 3232 |
| BmrI | ACTGGG | 2 cut(s) | 1333, 3406 |
| BmsI | GCATC | 7 cut(s) | 401, 987, 2313, 2360, 2974, 3076, 3275 |
| BmuI | ACTGGG | 2 cut(s) | 1333, 3406 |
| BpiI | GAAGAC | 2 cut(s) | 236, 2627 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 26, 58, 2339, 2371 |
| BpmI | CTGGAG | 2 cut(s) | 2568, 3237 |
| BpuEI | CTTGAG | 4 cut(s) | 272, 881, 1247, 4046 |
| BpuMI | CCSGG | 3 cut(s) | 2782, 2783, 3037 |
| BsaAI | YACGTR | 2 cut(s) | 126, 2103 |
| BsaBI | GATNNNNATC | 3 cut(s) | 825, 831, 1811 |
| BsaI | GGTCTC | 2 cut(s) | 466, 2894 |
| BsaJI | CCNNGG | 8 cut(s) | 544, 576, 1799, 2292, 2780, 2781, 3780, 3862 |
| BsaWI | WCCGGW | 2 cut(s) | 56, 2772 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 678, 708 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 56, 551, 1291, 2975, 3641, 3785 |
| Bse1I | ACTGG | 5 cut(s) | 38, 732, 1328, 2240, 3412 |
| Bse21I | CCTNAGG | 1 cut(s) | 2472 |
| Bse3DI | GCAATG | 3 cut(s) | 1064, 1386, 2118 |
| Bse8I | GATNNNNATC | 3 cut(s) | 825, 831, 1811 |
| BseBI | CCWGG | 4 cut(s) | 546, 2547, 2877, 3232 |
| BseDI | CCNNGG | 8 cut(s) | 544, 576, 1799, 2292, 2780, 2781, 3780, 3862 |
| BseJI | GATNNNNATC | 3 cut(s) | 825, 831, 1811 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 56, 551, 1291, 2975, 3641, 3785 |
| BseMI | GCAATG | 3 cut(s) | 1064, 1386, 2118 |
| BseMII | CTCAG | 3 cut(s) | 1611, 2463, 3705 |
| BseNI | ACTGG | 5 cut(s) | 38, 732, 1328, 2240, 3412 |
| BseRI | GAGGAG | 2 cut(s) | 185, 3197 |
| BseSI | GKGCMC | 2 cut(s) | 543, 1966 |
| BseYI | CCCAGC | 1 cut(s) | 2582 |
| BsgI | GTGCAG | 3 cut(s) | 1592, 3339, 3650 |
| BshNI | GGYRCC | 1 cut(s) | 104 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3600 |
| BsiHKCI | CYCGRG | 3 cut(s) | 155, 2499, 2781 |
| BsiSI | CCGG | 5 cut(s) | 57, 2773, 2782, 3036, 3504 |
| BslFI | GGGAC | 3 cut(s) | 921, 1194, 1772 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 56, 551, 1291, 2975, 3641, 3785 |
| BsmAI | GTCTC | 7 cut(s) | 46, 109, 466, 1142, 2146, 2894, 3472 |
| BsmFI | GGGAC | 3 cut(s) | 921, 1194, 1772 |
| BsmI | GAATGC | 2 cut(s) | 147, 2119 |
| Bso31I | GGTCTC | 2 cut(s) | 466, 2894 |
| BsoBI | CYCGRG | 3 cut(s) | 155, 2499, 2781 |
| Bsp120I | GGGCCC | 1 cut(s) | 539 |
| Bsp1286I | GDGCHC | 4 cut(s) | 543, 1330, 1966, 3600 |
| Bsp1407I | TGTACA | 1 cut(s) | 837 |
| Bsp19I | CCATGG | 3 cut(s) | 1799, 3780, 3862 |
| BspACI | CCGC | 3 cut(s) | 301, 343, 1264 |
| BspCNI | CTCAG | 3 cut(s) | 1612, 2464, 3704 |
| BspHI | TCATGA | 1 cut(s) | 9 |
| BspLI | GGNNCC | 9 cut(s) | 106, 437, 541, 542, 1210, 1760, 1814, 2771, 3538 |
| BspMAI | CTGCAG | 2 cut(s) | 1137, 3475 |
| BspPI | GGATC | 8 cut(s) | 1807, 1820, 1871, 2306, 2654, 3537, 3724, 3739 |
| BspQI | GCTCTTC | 1 cut(s) | 27 |
| BspT107I | GGYRCC | 1 cut(s) | 104 |
| BspTNI | GGTCTC | 2 cut(s) | 466, 2894 |
| BsrBI | CCGCTC | 1 cut(s) | 1264 |
| BsrDI | GCAATG | 3 cut(s) | 1064, 1386, 2118 |
| BsrGI | TGTACA | 1 cut(s) | 837 |
| BsrI | ACTGG | 5 cut(s) | 38, 732, 1328, 2240, 3412 |
| BssECI | CCNNGG | 8 cut(s) | 544, 576, 1799, 2292, 2780, 2781, 3780, 3862 |
| BssNAI | GTATAC | 2 cut(s) | 3611, 3775 |
| BssT1I | CCWWGG | 5 cut(s) | 576, 1799, 2292, 3780, 3862 |
| Bst1107I | GTATAC | 2 cut(s) | 3611, 3775 |
| Bst2UI | CCWGG | 4 cut(s) | 546, 2547, 2877, 3232 |
| Bst6I | CTCTTC | 2 cut(s) | 27, 1166 |
| BstAUI | TGTACA | 1 cut(s) | 837 |
| BstBAI | YACGTR | 2 cut(s) | 126, 2103 |
| BstC8I | GCNNGC | 5 cut(s) | 1140, 2227, 2383, 2689, 3424 |
| BstDEI | CTNAG | 5 cut(s) | 788, 1620, 2472, 3344, 3691 |
| BstDSI | CCRYGG | 3 cut(s) | 1799, 3780, 3862 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1289 |
| BstMAI | GTCTC | 7 cut(s) | 46, 109, 466, 1142, 2146, 2894, 3472 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 349, 737, 1124, 1514, 2776, 2993, 3147, 3263, 3500 |
| BstNI | CCWGG | 4 cut(s) | 546, 2547, 2877, 3232 |
| BstNSI | RCATGY | 1 cut(s) | 2159 |
| BstSCI | CCNGG | 7 cut(s) | 544, 2545, 2780, 2781, 2875, 3035, 3230 |
| BstSFI | CTRYAG | 6 cut(s) | 1133, 1861, 3045, 3471, 3909, 4089 |
| BstSLI | GKGCMC | 2 cut(s) | 543, 1966 |
| BstSNI | TACGTA | 1 cut(s) | 126 |
| BstV2I | GAAGAC | 2 cut(s) | 236, 2627 |
| BstX2I | RGATCY | 5 cut(s) | 820, 1812, 3529, 3559, 3729 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 2599, 3231, 3987 |
| BstYI | RGATCY | 5 cut(s) | 820, 1812, 3529, 3559, 3729 |
| BstZ17I | GTATAC | 2 cut(s) | 3611, 3775 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2472 |
| BsuI | GTATCC | 1 cut(s) | 2693 |
| BtgI | CCRYGG | 3 cut(s) | 1799, 3780, 3862 |
| BtgZI | GCGATG | 1 cut(s) | 3587 |
| BtsI | GCAGTG | 2 cut(s) | 3468, 3480 |
| BtsIMutI | CAGTG | 8 cut(s) | 720, 725, 1870, 3033, 3419, 3468, 3480, 3633 |
| Cac8I | GCNNGC | 5 cut(s) | 1140, 2227, 2383, 2689, 3424 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3680 |
| CciI | TCATGA | 1 cut(s) | 9 |
| Cfr13I | GGNCC | 8 cut(s) | 298, 539, 540, 758, 1007, 1208, 1759, 3140 |
| Cfr9I | CCCGGG | 1 cut(s) | 2781 |
| CseI | GACGC | 1 cut(s) | 535 |
| DdeI | CTNAG | 5 cut(s) | 788, 1620, 2472, 3344, 3691 |
| DraI | TTTAAA | 1 cut(s) | 357 |
| EaeI | YGGCCR | 2 cut(s) | 3501, 3879 |
| Eam1104I | CTCTTC | 2 cut(s) | 27, 1166 |
| EarI | CTCTTC | 2 cut(s) | 27, 1166 |
| Eco105I | TACGTA | 1 cut(s) | 126 |
| Eco130I | CCWWGG | 5 cut(s) | 576, 1799, 2292, 3780, 3862 |
| Eco147I | AGGCCT | 2 cut(s) | 1342, 2545 |
| Eco24I | GRGCYC | 2 cut(s) | 543, 1330 |
| Eco31I | GGTCTC | 2 cut(s) | 466, 2894 |
| Eco32I | GATATC | 2 cut(s) | 1038, 3956 |
| Eco47I | GGWCC | 5 cut(s) | 298, 758, 1007, 1208, 1759 |
| Eco57I | CTGAAG | 4 cut(s) | 357, 1395, 2285, 2540 |
| Eco81I | CCTNAGG | 1 cut(s) | 2472 |
| Eco88I | CYCGRG | 3 cut(s) | 155, 2499, 2781 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1289 |
| EcoO109I | RGGNCCY | 3 cut(s) | 539, 540, 1208 |
| EcoRI | GAATTC | 3 cut(s) | 1543, 3301, 3975 |
| EcoRII | CCWGG | 4 cut(s) | 544, 2545, 2875, 3230 |
| EcoRV | GATATC | 2 cut(s) | 1038, 3956 |
| EcoT14I | CCWWGG | 5 cut(s) | 576, 1799, 2292, 3780, 3862 |
| EcoT38I | GRGCYC | 2 cut(s) | 543, 1330 |
| ErhI | CCWWGG | 5 cut(s) | 576, 1799, 2292, 3780, 3862 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3255, 3287 |
| FaqI | GGGAC | 3 cut(s) | 921, 1194, 1772 |
| FauNDI | CATATG | 2 cut(s) | 1332, 1719 |
| FbaI | TGATCA | 2 cut(s) | 12, 1848 |
| FblI | GTMKAC | 3 cut(s) | 1554, 3610, 3774 |
| FriOI | GRGCYC | 2 cut(s) | 543, 1330 |
| GsaI | CCCAGC | 1 cut(s) | 2586 |
| GsuI | CTGGAG | 2 cut(s) | 2568, 3237 |
| HapII | CCGG | 5 cut(s) | 57, 2773, 2782, 3036, 3504 |
| HgaI | GACGC | 1 cut(s) | 535 |
| HincII | GTYRAC | 2 cut(s) | 686, 1467 |
| HindII | GTYRAC | 2 cut(s) | 686, 1467 |
| HindIII | AAGCTT | 2 cut(s) | 372, 1506 |
| HinfI | GANTC | 8 cut(s) | 77, 82, 909, 981, 2747, 2792, 4059, 4076 |
| HpaII | CCGG | 5 cut(s) | 57, 2773, 2782, 3036, 3504 |
| HpyCH4IV | ACGT | 6 cut(s) | 6, 125, 763, 1095, 1833, 2102 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 349, 737, 1124, 1514, 2776, 2993, 3147, 3263, 3500 |
| HpyF3I | CTNAG | 5 cut(s) | 788, 1620, 2472, 3344, 3691 |
| HpySE526I | ACGT | 6 cut(s) | 6, 125, 763, 1095, 1833, 2102 |
| Ksp22I | TGATCA | 2 cut(s) | 12, 1848 |
| LguI | GCTCTTC | 1 cut(s) | 27 |
| LmnI | GCTCC | 6 cut(s) | 1627, 1664, 2775, 2830, 3542, 4023 |
| LweI | GCATC | 7 cut(s) | 401, 987, 2313, 2360, 2974, 3076, 3275 |
| MaeII | ACGT | 6 cut(s) | 6, 125, 763, 1095, 1833, 2102 |
| MaeIII | GTNAC | 9 cut(s) | 880, 1294, 1354, 1591, 1726, 2734, 2855, 3215, 3244 |
| MbiI | CCGCTC | 1 cut(s) | 1264 |
| MfeI | CAATTG | 2 cut(s) | 2919, 3000 |
| MflI | RGATCY | 5 cut(s) | 820, 1812, 3529, 3559, 3729 |
| MhlI | GDGCHC | 4 cut(s) | 543, 1330, 1966, 3600 |
| MlsI | TGGCCA | 1 cut(s) | 3881 |
| MluNI | TGGCCA | 1 cut(s) | 3881 |
| MlyI | GAGTC | 6 cut(s) | 86, 91, 903, 975, 2756, 4053 |
| MmeI | TCCRAC | 9 cut(s) | 219, 295, 353, 736, 985, 2129, 2848, 3219, 3766 |
| Mox20I | TGGCCA | 1 cut(s) | 3881 |
| MscI | TGGCCA | 1 cut(s) | 3881 |
| MseI | TTAA | 5 cut(s) | 356, 420, 1121, 1434, 1698 |
| MslI | CAYNNNNRTG | 5 cut(s) | 357, 1844, 2597, 3473, 3494 |
| Msp20I | TGGCCA | 1 cut(s) | 3881 |
| MspA1I | CMGCKG | 1 cut(s) | 3677 |
| MspI | CCGG | 5 cut(s) | 57, 2773, 2782, 3036, 3504 |
| MspR9I | CCNGG | 7 cut(s) | 546, 2547, 2782, 2783, 2877, 3037, 3232 |
| MunI | CAATTG | 2 cut(s) | 2919, 3000 |
| Mva1269I | GAATGC | 2 cut(s) | 147, 2119 |
| MvaI | CCWGG | 4 cut(s) | 546, 2547, 2877, 3232 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 349, 737, 1124, 1514, 2776, 2993, 3147, 3263, 3500 |
| NciI | CCSGG | 3 cut(s) | 2782, 2783, 3037 |
| NcoI | CCATGG | 3 cut(s) | 1799, 3780, 3862 |
| NdeI | CATATG | 2 cut(s) | 1332, 1719 |
| NlaIV | GGNNCC | 9 cut(s) | 106, 437, 541, 542, 1210, 1760, 1814, 2771, 3538 |
| NmuCI | GTSAC | 4 cut(s) | 1294, 1726, 2734, 2855 |
| NspI | RCATGY | 1 cut(s) | 2159 |
| OliI | CACNNNNGTG | 1 cut(s) | 3473 |
| PaeR7I | CTCGAG | 1 cut(s) | 2499 |
| PagI | TCATGA | 1 cut(s) | 9 |
| PceI | AGGCCT | 2 cut(s) | 1342, 2545 |
| PciI | ACATGT | 1 cut(s) | 2155 |
| PciSI | GCTCTTC | 1 cut(s) | 27 |
| PctI | GAATGC | 2 cut(s) | 147, 2119 |
| PfeI | GAWTC | 2 cut(s) | 2792, 4076 |
| PleI | GAGTC | 6 cut(s) | 85, 90, 903, 975, 2755, 4053 |
| PpsI | GAGTC | 6 cut(s) | 85, 90, 903, 975, 2755, 4053 |
| Ppu21I | YACGTR | 2 cut(s) | 126, 2103 |
| PpuMI | RGGWCCY | 1 cut(s) | 1208 |
| PscI | ACATGT | 1 cut(s) | 2155 |
| PshBI | ATTAAT | 2 cut(s) | 420, 1121 |
| Psp5II | RGGWCCY | 1 cut(s) | 1208 |
| Psp6I | CCWGG | 4 cut(s) | 544, 2545, 2875, 3230 |
| PspFI | CCCAGC | 1 cut(s) | 2582 |
| PspGI | CCWGG | 4 cut(s) | 544, 2545, 2875, 3230 |
| PspN4I | GGNNCC | 9 cut(s) | 106, 437, 541, 542, 1210, 1760, 1814, 2771, 3538 |
| PspOMI | GGGCCC | 1 cut(s) | 539 |
| PspPI | GGNCC | 8 cut(s) | 298, 539, 540, 758, 1007, 1208, 1759, 3140 |
| PspPPI | RGGWCCY | 1 cut(s) | 1208 |
| PstI | CTGCAG | 2 cut(s) | 1137, 3475 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3680 |
| PsuI | RGATCY | 5 cut(s) | 820, 1812, 3529, 3559, 3729 |
| PvuII | CAGCTG | 1 cut(s) | 3677 |
| RseI | CAYNNNNRTG | 5 cut(s) | 357, 1844, 2597, 3473, 3494 |
| SapI | GCTCTTC | 1 cut(s) | 27 |
| SaqAI | TTAA | 5 cut(s) | 356, 420, 1121, 1434, 1698 |
| Sau96I | GGNCC | 8 cut(s) | 298, 539, 540, 758, 1007, 1208, 1759, 3140 |
| ScaI | AGTACT | 3 cut(s) | 1020, 2337, 3349 |
| SchI | GAGTC | 6 cut(s) | 86, 91, 903, 975, 2756, 4053 |
| ScrFI | CCNGG | 7 cut(s) | 546, 2547, 2782, 2783, 2877, 3037, 3232 |
| SduI | GDGCHC | 4 cut(s) | 543, 1330, 1966, 3600 |
| SfaNI | GCATC | 7 cut(s) | 401, 987, 2313, 2360, 2974, 3076, 3275 |
| SfcI | CTRYAG | 6 cut(s) | 1133, 1861, 3045, 3471, 3909, 4089 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 3147 |
| Sfr274I | CTCGAG | 1 cut(s) | 2499 |
| SinI | GGWCC | 5 cut(s) | 298, 758, 1007, 1208, 1759 |
| SlaI | CTCGAG | 1 cut(s) | 2499 |
| SmaI | CCCGGG | 1 cut(s) | 2783 |
| SmiI | ATTTAAAT | 1 cut(s) | 357 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 357, 1844, 2597, 3473, 3494 |
| SmlI | CTYRAG | 5 cut(s) | 287, 896, 1226, 2499, 4061 |
| SmoI | CTYRAG | 5 cut(s) | 287, 896, 1226, 2499, 4061 |
| SnaBI | TACGTA | 1 cut(s) | 126 |
| SseBI | AGGCCT | 2 cut(s) | 1342, 2545 |
| SsiI | CCGC | 3 cut(s) | 301, 343, 1264 |
| SspI | AATATT | 4 cut(s) | 811, 877, 2955, 3392 |
| StuI | AGGCCT | 2 cut(s) | 1342, 2545 |
| StyD4I | CCNGG | 7 cut(s) | 544, 2545, 2780, 2781, 2875, 3035, 3230 |
| StyI | CCWWGG | 5 cut(s) | 576, 1799, 2292, 3780, 3862 |
| SwaI | ATTTAAAT | 1 cut(s) | 357 |
| TaiI | ACGT | 6 cut(s) | 9, 128, 766, 1098, 1836, 2105 |
| TaqI | TCGA | 8 cut(s) | 80, 348, 912, 1164, 1951, 2442, 2500, 2948 |
| TatI | WGTACW | 7 cut(s) | 837, 1018, 1239, 2335, 3347, 3375, 3687 |
| TfiI | GAWTC | 2 cut(s) | 2792, 4076 |
| Tru1I | TTAA | 5 cut(s) | 356, 420, 1121, 1434, 1698 |
| Tru9I | TTAA | 5 cut(s) | 356, 420, 1121, 1434, 1698 |
| TscAI | CASTG | 8 cut(s) | 720, 732, 1870, 3033, 3419, 3475, 3480, 3633 |
| TseFI | GTSAC | 4 cut(s) | 1294, 1726, 2734, 2855 |
| Tsp45I | GTSAC | 4 cut(s) | 1294, 1726, 2734, 2855 |
| TspGWI | ACGGA | 1 cut(s) | 1125 |
| TspMI | CCCGGG | 1 cut(s) | 2781 |
| TspRI | CASTG | 8 cut(s) | 720, 732, 1870, 3033, 3419, 3475, 3480, 3633 |
| VpaK11BI | GGWCC | 5 cut(s) | 298, 758, 1007, 1208, 1759 |
| VspI | ATTAAT | 2 cut(s) | 420, 1121 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1289 |
| XceI | RCATGY | 1 cut(s) | 2159 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 497, 1937 |
| XhoI | CTCGAG | 1 cut(s) | 2499 |
| XmaI | CCCGGG | 1 cut(s) | 2781 |
| XmiI | GTMKAC | 3 cut(s) | 1554, 3610, 3774 |
| ZrmI | AGTACT | 3 cut(s) | 1020, 2337, 3349 |