Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Reverse (-)

8163826 .. 8165001

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0092800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGAAGAAAGTGGTCGTAGATCACTATCAGGTTCTTGGTTTACCGTCTGGTGAGGAAGGGGCCAAGCTTGAGGACAAAGAGATCACAAAGGCGTACAGAGCAAAGGCTTTGAAGTTGCATCCAGACAAGAGACCAAACGATCCCAATGCGAATGCCGAGTTCCAAAGGCTCAACGCATCCTATGAGATACTCAATGATCCAAATGCCCGGAAACAGTTCGACTCTTCTCTGAGACTTGAGGACAAGCCTTCGGAACCAACACCAACCTCTGAACCACCACCAAGTAAGAATGAGGATCTTGACCAGGGTTACTTGTTTGTGGTTGGTTTGTTAATCTTTGTTTTAGCCCCCATGGTTTTTCCGGAATCCAGATCTAGAAGCAGTACGTCGAATAGGTTGGGTTCTTATATAGAAGGGTTCTTTAAATTACCCAAACGTGAAAGATTGGATCTCTGGTCGGGGATGATTCGACTAGGTCAATATTTTAAACGCAGACCACCTCCTCCTCAGGCTACCACCAATCAAGAACCACAAGTAGAAGATCACGAAGATAATCAAGAATCACTAGTAGAGGATCATGAAGATATTGAGGATTGGGTGATGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

203

Amino Acids

23.29

Weight (kDa)

5.07

Isoelectric Point (pI)

60.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	8 - 75	1.2e-19	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	364
AclWI	GGATC	5 cut(s)	137, 194, 306, 459, 585
AfaI	GTAC	2 cut(s)	98, 388
AgsI	TTSAA	1 cut(s)	115
AhlI	ACTAGT	1 cut(s)	568
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	2 cut(s)	127, 229
AlwI	GGATC	5 cut(s)	137, 194, 306, 459, 585
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	63
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	65
AxyI	CCTNAGG	1 cut(s)	510
BccI	CCATC	1 cut(s)	598
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	308
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	127, 229
BcuI	ACTAGT	1 cut(s)	568
BfaI	CTAG	3 cut(s)	378, 476, 569
BglII	AGATCT	1 cut(s)	374
Bme1390I	CCNGG	2 cut(s)	211, 308
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	64, 258
BmrFI	CCNGG	2 cut(s)	211, 308
BmsI	GCATC	2 cut(s)	130, 188
BpuEI	CTTGAG	2 cut(s)	92, 260
BpuMI	CCSGG	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	307, 354
BsaWI	WCCGGW	1 cut(s)	364
Bse21I	CCTNAGG	1 cut(s)	510
Bse8I	GATNNNNATC	1 cut(s)	27
BseAI	TCCGGA	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	2 cut(s)	307, 354
BseGI	GGATG	3 cut(s)	121, 179, 471
BseJI	GATNNNNATC	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	224, 524
BseRI	GAGGAG	2 cut(s)	495, 498
BshFI	GGCC	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	211, 365
BsmAI	GTCTC	2 cut(s)	127, 229
BsmI	GAATGC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	65
Bso31I	GGTCTC	1 cut(s)	127
Bsp13I	TCCGGA	1 cut(s)	364
Bsp143I	GATC	9 cut(s)	22, 84, 142, 199, 298, 374, 451, 544, 577
Bsp19I	CCATGG	1 cut(s)	354
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	225, 523
BspEI	TCCGGA	1 cut(s)	364
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	2 cut(s)	64, 258
BspPI	GGATC	5 cut(s)	137, 194, 306, 459, 585
BspTNI	GGTCTC	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	307, 354
BssMI	GATC	9 cut(s)	22, 84, 142, 199, 298, 374, 451, 544, 577
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	48, 219
Bst6I	CTCTTC	1 cut(s)	232
BstDEI	CTNAG	2 cut(s)	233, 510
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	3 cut(s)	121, 179, 471
BstKTI	GATC	9 cut(s)	25, 87, 145, 202, 301, 377, 454, 547, 580
BstMAI	GTCTC	2 cut(s)	127, 229
BstMBI	GATC	9 cut(s)	22, 84, 142, 199, 298, 374, 451, 544, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	209, 306
BstX2I	RGATCY	3 cut(s)	298, 374, 451
BstYI	RGATCY	3 cut(s)	298, 374, 451
Bsu36I	CCTNAGG	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	3 cut(s)	121, 179, 471
CciI	TCATGA	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	97, 387
CviAII	CATG	2 cut(s)	355, 581
CviJI	RGCY	7 cut(s)	65, 70, 110, 172, 250, 350, 515
CviKI_1	RGCY	7 cut(s)	65, 70, 110, 172, 250, 350, 515
CviQI	GTAC	2 cut(s)	97, 387
DdeI	CTNAG	2 cut(s)	233, 510
DpnI	GATC	9 cut(s)	24, 86, 144, 201, 300, 376, 453, 546, 579
DpnII	GATC	9 cut(s)	22, 84, 142, 199, 298, 374, 451, 544, 577
DraI	TTTAAA	2 cut(s)	427, 490
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	354
Eco31I	GGTCTC	1 cut(s)	127
Eco81I	CCTNAGG	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	2 cut(s)	358, 584
FaiI	YATR	5 cut(s)	186, 356, 411, 413, 582
FatI	CATG	2 cut(s)	354, 580
FokI	GGATG	3 cut(s)	108, 166, 478
FspBI	CTAG	3 cut(s)	378, 476, 569
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	2 cut(s)	211, 365
Hin1II	CATG	2 cut(s)	358, 584
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	4 cut(s)	224, 368, 469, 563
HpaII	CCGG	2 cut(s)	211, 365
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	3 cut(s)	234, 256, 274
Hpy188III	TCNNGA	9 cut(s)	125, 302, 365, 372, 378, 527, 548, 560, 581
Hpy8I	GTNNAC	1 cut(s)	44
Hpy99I	CGWCG	1 cut(s)	394
HpyAV	CCTTC	3 cut(s)	53, 261, 410
HpyCH4III	ACNGT	2 cut(s)	48, 219
HpyCH4IV	ACGT	2 cut(s)	389, 439
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	2 cut(s)	233, 510
HpySE526I	ACGT	2 cut(s)	389, 439
Hsp92II	CATG	2 cut(s)	358, 584
Kpn2I	TCCGGA	1 cut(s)	364
Kzo9I	GATC	9 cut(s)	22, 84, 142, 199, 298, 374, 451, 544, 577
LweI	GCATC	2 cut(s)	130, 188
MaeI	CTAG	3 cut(s)	378, 476, 569
MaeII	ACGT	2 cut(s)	389, 439
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	9 cut(s)	24, 86, 144, 201, 300, 376, 453, 546, 579
MboI	GATC	9 cut(s)	22, 84, 142, 199, 298, 374, 451, 544, 577
MboII	GAAGA	5 cut(s)	19, 219, 554, 563, 596
MflI	RGATCY	3 cut(s)	298, 374, 451
MluCI	AATT	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	218
MroI	TCCGGA	1 cut(s)	364
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	4 cut(s)	335, 426, 489, 610
MspI	CCGG	2 cut(s)	211, 365
MspR9I	CCNGG	2 cut(s)	211, 308
Mva1269I	GAATGC	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	101
NciI	CCSGG	1 cut(s)	211
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	9 cut(s)	22, 84, 142, 199, 298, 374, 451, 544, 577
NlaIII	CATG	2 cut(s)	358, 584
NlaIV	GGNNCC	2 cut(s)	64, 258
NmeAIII	GCCGAG	1 cut(s)	184
PagI	TCATGA	1 cut(s)	580
PctI	GAATGC	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	3 cut(s)	368, 469, 563
PflFI	GACNNNGTC	1 cut(s)	477
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	64, 258
PspPI	GGNCC	1 cut(s)	63
PsuI	RGATCY	3 cut(s)	298, 374, 451
PsyI	GACNNNGTC	1 cut(s)	477
RsaI	GTAC	2 cut(s)	98, 388
RsaNI	GTAC	2 cut(s)	97, 387
SaqAI	TTAA	4 cut(s)	335, 426, 489, 610
Sau3AI	GATC	9 cut(s)	22, 84, 142, 199, 298, 374, 451, 544, 577
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	211, 308
SetI	ASST	8 cut(s)	36, 72, 272, 392, 401, 442, 481, 505
SfaNI	GCATC	2 cut(s)	130, 188
SmlI	CTYRAG	2 cut(s)	71, 239
SmoI	CTYRAG	2 cut(s)	71, 239
SpeI	ACTAGT	1 cut(s)	568
Sse9I	AATT	1 cut(s)	428
SspI	AATATT	1 cut(s)	485
SspMI	CTAG	3 cut(s)	378, 476, 569
StyD4I	CCNGG	2 cut(s)	209, 306
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	48, 219
TaiI	ACGT	2 cut(s)	392, 442
TaqI	TCGA	3 cut(s)	222, 392, 472
TasI	AATT	1 cut(s)	428
TfiI	GAWTC	3 cut(s)	368, 469, 563
Tru1I	TTAA	4 cut(s)	335, 426, 489, 610
Tru9I	TTAA	4 cut(s)	335, 426, 489, 610
TspDTI	ATGAA	1 cut(s)	597
Tth111I	GACNNNGTC	1 cut(s)	477
XbaI	TCTAGA	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	3 cut(s)	378, 476, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.