Rorug01G0217100

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000696
Physical Location & Seq
Forward (+)
31042478 .. 31044022
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0217100.1

Sequence Viewer

Length: 462 bp
ATGCAGAATCTGAACAAGGGTCTTCGAACACTCACCTCTCTTGAAGATTTATCACTTGATTTTGACTGCGACAAAAAAGTAGGTTGGTTTGCGGAGGAGGAGGAGGAGGGGCTGTTTCCCAGCACTCTCACATATCTCCAGATCTGCCGCCTGAATTGTGAGACCATCGACGGCGTCAAGTGGTTTGGCCATCTCAACTCTCTTCGAGAATTGATTATATTTAATTGGCCTACGCTCCGGTGCTTGCCAGATAGTGGACTACCCTCTTCTCTTCAAGACTTGCAGATTTGGCGCTCCCCTGCTCTGCAGTGCTTGCCAGATAGTGGACTACCTTCTTCTCTTTCTCGTCTATATATCAGTGAATGTCCTTTGCTTGAGAAACGGTGCCAAAGAGAGACGGGTGAAGATTGGCCCAAGATTGCTCACATCAAGCACATACGTATCAATATGGTAATGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

153

Amino Acids

17.63

Weight (kDa)

5.2

Isoelectric Point (pI)

69.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 384
AccB7I CCANNNNNTGG 2 cut(s) 254, 323
AciI CCGC 2 cut(s) 92, 148
AcoI YGGCCR 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 254, 323
AgsI TTSAA 2 cut(s) 44, 275
Alw26I GTCTC 2 cut(s) 155, 389
AlwNI CAGNNNCTG 1 cut(s) 10
AoxI GGCC 3 cut(s) 187, 227, 410
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 411
AsuHPI GGTGA 2 cut(s) 25, 413
AsuII TTCGAA 1 cut(s) 25
BaeI ACNNNNGTAYC 2 cut(s) 424, 457
BalI TGGCCA 1 cut(s) 189
BanI GGYRCC 1 cut(s) 384
BbsI GAAGAC 1 cut(s) 14
BccI CCATC 2 cut(s) 173, 198
BceAI ACGGC 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 155, 389
BfmI CTRYAG 1 cut(s) 305
BfoI RGCGCY 1 cut(s) 295
BglII AGATCT 1 cut(s) 141
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 411
BmiI GGNNCC 1 cut(s) 386
BpiI GAAGAC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 122
Bpu14I TTCGAA 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 395
BsaAI YACGTR 1 cut(s) 440
BsaHI GRCGYC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 155
BsaWI WCCGGW 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 323
BseLI CCNNNNNNNGG 2 cut(s) 254, 323
BseRI GAGGAG 4 cut(s) 110, 113, 116, 119
BseYI CCCAGC 1 cut(s) 119
BshFI GGCC 3 cut(s) 189, 229, 412
BshNI GGYRCC 1 cut(s) 384
BsiSI CCGG 1 cut(s) 238
BslI CCNNNNNNNGG 2 cut(s) 254, 323
BsmAI GTCTC 2 cut(s) 155, 389
BsmBI CGTCTC 1 cut(s) 389
BsnI GGCC 3 cut(s) 189, 229, 412
Bso31I GGTCTC 1 cut(s) 155
Bsp119I TTCGAA 1 cut(s) 25
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 2 cut(s) 92, 148
BspANI GGCC 3 cut(s) 189, 229, 412
BspLI GGNNCC 1 cut(s) 386
BspMAI CTGCAG 1 cut(s) 309
BspT104I TTCGAA 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 384
BspTNI GGTCTC 1 cut(s) 155
BssMI GATC 1 cut(s) 141
BssNI GRCGYC 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 384
Bst6I CTCTTC 3 cut(s) 207, 271, 276
BstACI GRCGYC 1 cut(s) 174
BstAPI GCANNNNNTGC 1 cut(s) 313
BstBAI YACGTR 1 cut(s) 440
BstBI TTCGAA 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 245, 314
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 2 cut(s) 155, 389
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 2 cut(s) 289, 313
BstSFI CTRYAG 1 cut(s) 305
BstSNI TACGTA 1 cut(s) 440
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BsuRI GGCC 3 cut(s) 189, 229, 412
BtsI GCAGTG 1 cut(s) 314
BtsIMutI CAGTG 2 cut(s) 314, 364
Cac8I GCNNGC 2 cut(s) 245, 314
CaiI CAGNNNCTG 1 cut(s) 10
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 411
CseI GACGC 1 cut(s) 163
CviJI RGCY 4 cut(s) 112, 189, 229, 412
CviKI_1 RGCY 4 cut(s) 112, 189, 229, 412
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 3 cut(s) 207, 271, 276
EarI CTCTTC 3 cut(s) 207, 271, 276
Eco105I TACGTA 1 cut(s) 440
Eco31I GGTCTC 1 cut(s) 155
Esp3I CGTCTC 1 cut(s) 389
FaiI YATR 7 cut(s) 133, 218, 352, 354, 437, 449, 460
Fnu4HI GCNGC 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 148
GlaI GCGC 1 cut(s) 293
GluI GCNGC 1 cut(s) 148
GsaI CCCAGC 1 cut(s) 123
GsuI CTGGAG 1 cut(s) 122
HaeII RGCGCY 1 cut(s) 295
HaeIII GGCC 3 cut(s) 189, 229, 412
HapII CCGG 1 cut(s) 238
HgaI GACGC 1 cut(s) 163
HhaI GCGC 1 cut(s) 294
Hin1I GRCGYC 1 cut(s) 174
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HinfI GANTC 1 cut(s) 7
HpaII CCGG 1 cut(s) 238
HphI GGTGA 2 cut(s) 25, 413
Hpy166II GTNNAC 2 cut(s) 257, 326
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 4 cut(s) 41, 139, 206, 275
Hpy8I GTNNAC 2 cut(s) 257, 326
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 342
HpyCH4III ACNGT 1 cut(s) 384
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 3 cut(s) 4, 283, 307
HpyF10VI GCNNNNNNNGC 2 cut(s) 289, 313
HpySE526I ACGT 1 cut(s) 439
Hsp92I GRCGYC 1 cut(s) 174
HspAI GCGC 1 cut(s) 292
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 2 cut(s) 240, 299
LpnPI CCDG 7 cut(s) 133, 152, 164, 251, 261, 312, 330
MaeII ACGT 1 cut(s) 439
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 7 cut(s) 14, 56, 194, 258, 263, 327, 416
MflI RGATCY 1 cut(s) 141
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 3 cut(s) 154, 209, 223
MluNI TGGCCA 1 cut(s) 189
MnlI CCTC 7 cut(s) 46, 88, 91, 94, 97, 100, 274
Mox20I TGGCCA 1 cut(s) 189
MscI TGGCCA 1 cut(s) 189
MseI TTAA 1 cut(s) 222
Msp20I TGGCCA 1 cut(s) 189
MspI CCGG 1 cut(s) 238
MwoI GCNNNNNNNGC 2 cut(s) 289, 313
NdeII GATC 1 cut(s) 141
NlaIV GGNNCC 1 cut(s) 386
NspV TTCGAA 1 cut(s) 25
PfeI GAWTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 173
PflMI CCANNNNNTGG 2 cut(s) 254, 323
PkrI GCNGC 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 386
PspPI GGNCC 1 cut(s) 411
PstI CTGCAG 1 cut(s) 309
PstNI CAGNNNCTG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 141
PsyI GACNNNGTC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 411
SetI ASST 4 cut(s) 38, 85, 334, 442
SfcI CTRYAG 1 cut(s) 305
SfuI TTCGAA 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
SnaBI TACGTA 1 cut(s) 440
Sse9I AATT 3 cut(s) 154, 209, 223
SsiI CCGC 2 cut(s) 92, 148
TaaI ACNGT 1 cut(s) 384
TaiI ACGT 1 cut(s) 442
TaqI TCGA 3 cut(s) 25, 168, 205
TasI AATT 3 cut(s) 154, 209, 223
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 2 cut(s) 314, 364
TspRI CASTG 2 cut(s) 314, 364
Tth111I GACNNNGTC 1 cut(s) 173
Van91I CCANNNNNTGG 2 cut(s) 254, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.