Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Reverse (-)

36213762 .. 36218261

Gene Structure 4500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0327500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCCGGAATCCGATTGGGCCCTGATGACTCAGAGATATCGCAGCAGAGCCGAGGAGCTGCTCCGGCCGATCTTATCTCAGACGACGATCGCTCCGTCGCCGCGGACTCATGGTCCATCAAGAGCGACTATGGGAGCACTCTCGACGACGACCAACGCCACGCTGATGCTGCTGAGGATCTCTCCGCCGCTAACCTCCGCGCCCCCTCCGATTACAGCTCTGACAAGGAGGAACCAGATTCTGATGGGATGACATCAATGCTAGGCCTTCAGAGTTATTGGGATGCTGCCTATGCAGATGAGCTGGTTAATTTTCGTGAACATGGGCATGCTGGTGAAGTTTGGTTTGGAGCTGATGTCATGGAAGTTGTTGCATCTTGGACCAAAACATTATGCATTGATGCTTCTCAAGGTCGCATGCCAAATCATGTTGATAATAGCAAATCTGAATCAGCTGAACAAGGTTACAAGTTTCTTTCAGGTTGGAGTGTACTTGACATTGGGACTGGCAATGGATTGCTTCTTCAAGAACTTTCCAAGCAGGGGTTTTCTGATTTAACAGGAATTGATTATAGTGAAGGGGCGATTGACCTTGCTCGAAACCTTGCTGACCGTGATGGATTACCCAATATTCATTTTTTGGTTGATGATATTCTAGAGACGAAGTTGGAACAACAGTTTCAGCTTGTTGTAGACAAAGGAACCTTAGATGCCATTGGCTTGCATCCAGATGGTGCTATAAAAAGGATAATATATTGGGATTCAGTTTTGAGATTGATGGCTCCTGGTGGAATATTAGTAATCACATCATGTAACAGCACTAAAGAAGAATTAGTGCAAGAAGTGGAAAATTTCAATCAAAGGACTGGTGTGACCCAAGATCAAGAAGGATGCAAAGATACGGCTCCTCAGCTTCAATACCTTAATCATGTTCGCACATATCCAACATTCATGTTTGGTGGATCCGTAGGATCACGGGTTGCCACTGTGGCATTTCTCCGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

335

Amino Acids

36.58

Weight (kDa)

4.37

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_31	PF13847	160 - 287	4.7e-21	Methyltransferase domain
Methyltransf_23	PF13489	160 - 274	5.5e-10	Methyltransferase domain
MTS	PF05175	163 - 251	9.9e-06	Methyltransferase small domain
Methyltransf_25	PF13649	164 - 239	5.3e-13	Methyltransferase domain
Methyltransf_11	PF08241	165 - 268	6.4e-10	Methyltransferase domain
Methyltransf_12	PF08242	165 - 266	1.2e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	693
AccII	CGCG	2 cut(s)	104, 201
AccIII	TCCGGA	1 cut(s)	999
AciI	CCGC	5 cut(s)	102, 104, 186, 189, 199
AclWI	GGATC	4 cut(s)	186, 957, 970, 979
AcoI	YGGCCR	2 cut(s)	3, 66
AcsI	RAATTY	1 cut(s)	850
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	1 cut(s)	543
AgsI	TTSAA	3 cut(s)	527, 856, 917
AhdI	GACNNNNNGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	784
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AluBI	AGCT	7 cut(s)	59, 219, 304, 353, 455, 685, 913
AluI	AGCT	7 cut(s)	59, 219, 304, 353, 455, 685, 913
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	4 cut(s)	186, 957, 970, 979
AlwNI	CAGNNNCTG	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	999
AoxI	GGCC	4 cut(s)	3, 19, 66, 265
ApaI	GGGCCC	1 cut(s)	23
ApeKI	GCWGC	4 cut(s)	43, 59, 170, 287
ApoI	RAATTY	1 cut(s)	850
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	4 cut(s)	19, 20, 114, 381
AsuHPI	GGTGA	1 cut(s)	347
AvaII	GGWCC	2 cut(s)	114, 381
BaeGI	GKGCMC	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	962
BanII	GRGCYC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	140
BbvCI	CCTCAGC	2 cut(s)	174, 909
BbvI	GCAGC	4 cut(s)	46, 55, 157, 274
BccI	CCATC	5 cut(s)	125, 239, 611, 725, 772
BceAI	ACGGC	1 cut(s)	918
BciT130I	CCWGG	1 cut(s)	786
BcoDI	GTCTC	1 cut(s)	653
BfaI	CTAG	2 cut(s)	263, 656
BglI	GCCNNNNNGGC	1 cut(s)	989
BisI	GCNGC	6 cut(s)	44, 60, 102, 171, 189, 288
BlsI	GCNGC	6 cut(s)	45, 61, 103, 172, 190, 289
Bme1390I	CCNGG	1 cut(s)	786
Bme18I	GGWCC	2 cut(s)	114, 381
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmgT120I	GGNCC	4 cut(s)	19, 20, 114, 381
BmiI	GGNNCC	6 cut(s)	21, 234, 703, 783, 906, 964
BmrFI	CCNGG	1 cut(s)	786
BmsI	GCATC	7 cut(s)	157, 274, 383, 391, 700, 733, 881
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
Bpu10I	CCTNAGC	2 cut(s)	174, 909
BpuEI	CTTGAG	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	52, 102
BsaWI	WCCGGW	1 cut(s)	999
BsaXI	ACNNNNNCTCC	4 cut(s)	77, 107, 342, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse1I	ACTGG	2 cut(s)	511, 871
Bse3DI	GCAATG	1 cut(s)	517
BseAI	TCCGGA	1 cut(s)	999
BseBI	CCWGG	1 cut(s)	786
BseDI	CCNNGG	2 cut(s)	52, 102
BseGI	GGATG	4 cut(s)	255, 289, 724, 896
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	4 cut(s)	45, 93, 165, 923
BseNI	ACTGG	2 cut(s)	511, 871
BseRI	GAGGAG	2 cut(s)	69, 897
BseSI	GKGCMC	1 cut(s)	23
BseX3I	CGGCCG	1 cut(s)	66
BseXI	GCAGC	4 cut(s)	46, 55, 157, 274
Bsh1236I	CGCG	2 cut(s)	104, 201
Bsh1285I	CGRYCG	2 cut(s)	69, 91
BshFI	GGCC	4 cut(s)	5, 21, 68, 267
BsiEI	CGRYCG	2 cut(s)	69, 91
BsiHKAI	GWGCWC	1 cut(s)	140
BsiSI	CCGG	3 cut(s)	6, 65, 1000
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmAI	GTCTC	1 cut(s)	653
BsmBI	CGTCTC	1 cut(s)	653
BsmFI	GGGAC	1 cut(s)	517
BsnI	GGCC	4 cut(s)	5, 21, 68, 267
Bsp120I	GGGCCC	1 cut(s)	19
Bsp1286I	GDGCHC	2 cut(s)	23, 140
Bsp13I	TCCGGA	1 cut(s)	999
Bsp143I	GATC	6 cut(s)	70, 88, 178, 880, 962, 971
BspACI	CCGC	5 cut(s)	102, 104, 186, 189, 199
BspANI	GGCC	4 cut(s)	5, 21, 68, 267
BspCNI	CTCAG	4 cut(s)	44, 92, 166, 922
BspEI	TCCGGA	1 cut(s)	999
BspFNI	CGCG	2 cut(s)	104, 201
BspLI	GGNNCC	6 cut(s)	21, 234, 703, 783, 906, 964
BspPI	GGATC	4 cut(s)	186, 957, 970, 979
BsrDI	GCAATG	1 cut(s)	517
BsrI	ACTGG	2 cut(s)	511, 871
BssECI	CCNNGG	2 cut(s)	52, 102
BssMI	GATC	6 cut(s)	70, 88, 178, 880, 962, 971
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	3 cut(s)	614, 678, 988
BstC8I	GCNNGC	3 cut(s)	330, 419, 722
BstDEI	CTNAG	5 cut(s)	31, 79, 174, 706, 909
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	4 cut(s)	255, 289, 724, 896
BstFNI	CGCG	2 cut(s)	104, 201
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	6 cut(s)	73, 91, 181, 883, 965, 974
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	6 cut(s)	70, 88, 178, 880, 962, 971
BstMCI	CGRYCG	2 cut(s)	69, 91
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 170, 293, 989
BstNI	CCWGG	1 cut(s)	786
BstNSI	RCATGY	2 cut(s)	332, 421
BstSCI	CCNGG	1 cut(s)	784
BstSLI	GKGCMC	1 cut(s)	23
BstUI	CGCG	2 cut(s)	104, 201
BstV1I	GCAGC	4 cut(s)	46, 55, 157, 274
BstX2I	RGATCY	2 cut(s)	178, 962
BstYI	RGATCY	2 cut(s)	178, 962
BstZI	CGGCCG	1 cut(s)	66
BsuRI	GGCC	4 cut(s)	5, 21, 68, 267
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	4 cut(s)	255, 289, 724, 896
BtsIMutI	CAGTG	1 cut(s)	984
Cac8I	GCNNGC	3 cut(s)	330, 419, 722
CaiI	CAGNNNCTG	1 cut(s)	242
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	4 cut(s)	19, 20, 114, 381
Cfr42I	CCGCGG	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	491
CviAII	CATG	9 cut(s)	111, 323, 329, 361, 418, 428, 810, 929, 952
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	5 cut(s)	31, 79, 174, 706, 909
DpnI	GATC	6 cut(s)	72, 90, 180, 882, 964, 973
DpnII	GATC	6 cut(s)	70, 88, 178, 880, 962, 971
DriI	GACNNNNNGTC	1 cut(s)	112
EaeI	YGGCCR	2 cut(s)	3, 66
EagI	CGGCCG	1 cut(s)	66
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EciI	GGCGGA	1 cut(s)	175
EclXI	CGGCCG	1 cut(s)	66
Eco147I	AGGCCT	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	23
Eco32I	GATATC	1 cut(s)	39
Eco47I	GGWCC	2 cut(s)	114, 381
Eco52I	CGGCCG	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	254
EcoO109I	RGGNCCY	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	784
EcoRV	GATATC	1 cut(s)	39
EcoT22I	ATGCAT	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	23
Esp3I	CGTCTC	1 cut(s)	653
FaeI	CATG	9 cut(s)	114, 326, 332, 364, 421, 431, 813, 932, 955
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	9 cut(s)	110, 322, 328, 360, 417, 427, 809, 928, 951
FblI	GTMKAC	1 cut(s)	693
Fnu4HI	GCNGC	6 cut(s)	44, 60, 102, 171, 189, 288
FokI	GGATG	4 cut(s)	262, 296, 711, 903
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	6 cut(s)	44, 60, 102, 171, 189, 288
FspBI	CTAG	2 cut(s)	263, 656
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	6 cut(s)	44, 60, 102, 171, 189, 288
HaeIII	GGCC	4 cut(s)	5, 21, 68, 267
HapII	CCGG	3 cut(s)	6, 65, 1000
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	9 cut(s)	114, 326, 332, 364, 421, 431, 813, 932, 955
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	6 cut(s)	9, 29, 107, 239, 449, 761
HpaII	CCGG	3 cut(s)	6, 65, 1000
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	3 cut(s)	320, 491, 694
Hpy188I	TCNGA	9 cut(s)	14, 34, 82, 211, 223, 244, 273, 448, 553
Hpy188III	TCNNGA	8 cut(s)	121, 143, 317, 527, 656, 728, 884, 1000
Hpy8I	GTNNAC	3 cut(s)	320, 491, 694
Hpy99I	CGWCG	4 cut(s)	89, 101, 149, 152
HpyAV	CCTTC	3 cut(s)	278, 572, 881
HpyCH4III	ACNGT	3 cut(s)	614, 678, 988
HpyCH4V	TGCA	6 cut(s)	296, 374, 396, 724, 838, 894
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 170, 293, 989
HpyF3I	CTNAG	5 cut(s)	31, 79, 174, 706, 909
Hsp92II	CATG	9 cut(s)	114, 326, 332, 364, 421, 431, 813, 932, 955
HspAI	GCGC	1 cut(s)	201
Kpn2I	TCCGGA	1 cut(s)	999
KspI	CCGCGG	1 cut(s)	105
Kzo9I	GATC	6 cut(s)	70, 88, 178, 880, 962, 971
LmnI	GCTCC	7 cut(s)	56, 67, 98, 135, 350, 787, 910
Lsp1109I	GCAGC	4 cut(s)	46, 55, 157, 274
LweI	GCATC	7 cut(s)	157, 274, 383, 391, 700, 733, 881
MaeI	CTAG	2 cut(s)	263, 656
MaeIII	GTNAC	3 cut(s)	464, 812, 871
MalI	GATC	6 cut(s)	72, 90, 180, 882, 964, 973
MboI	GATC	6 cut(s)	70, 88, 178, 880, 962, 971
MboII	GAAGA	2 cut(s)	515, 839
MflI	RGATCY	2 cut(s)	178, 962
MhlI	GDGCHC	2 cut(s)	23, 140
MluCI	AATT	5 cut(s)	310, 564, 830, 850, 1003
MlyI	GAGTC	2 cut(s)	23, 101
MmeI	TCCRAC	3 cut(s)	464, 648, 968
MnlI	CCTC	6 cut(s)	47, 169, 206, 217, 223, 918
Mph1103I	ATGCAT	1 cut(s)	398
MroI	TCCGGA	1 cut(s)	999
MseI	TTAA	3 cut(s)	309, 557, 924
MslI	CAYNNNNRTG	4 cut(s)	165, 327, 333, 729
MspA1I	CMGCKG	2 cut(s)	104, 455
MspI	CCGG	3 cut(s)	6, 65, 1000
MspR9I	CCNGG	1 cut(s)	786
MvaI	CCWGG	1 cut(s)	786
MvnI	CGCG	2 cut(s)	104, 201
MwoI	GCNNNNNNNGC	4 cut(s)	65, 170, 293, 989
NdeII	GATC	6 cut(s)	70, 88, 178, 880, 962, 971
NlaIII	CATG	9 cut(s)	114, 326, 332, 364, 421, 431, 813, 932, 955
NlaIV	GGNNCC	6 cut(s)	21, 234, 703, 783, 906, 964
NmeAIII	GCCGAG	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	871
NsiI	ATGCAT	1 cut(s)	398
NspI	RCATGY	2 cut(s)	332, 421
PaeI	GCATGC	2 cut(s)	332, 421
PceI	AGGCCT	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PfeI	GAWTC	4 cut(s)	9, 239, 449, 761
PkrI	GCNGC	6 cut(s)	45, 61, 103, 172, 190, 289
Ple19I	CGATCG	1 cut(s)	91
PleI	GAGTC	2 cut(s)	23, 101
PpsI	GAGTC	2 cut(s)	23, 101
Psp6I	CCWGG	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	6 cut(s)	21, 234, 703, 783, 906, 964
PspOMI	GGGCCC	1 cut(s)	19
PspPI	GGNCC	4 cut(s)	19, 20, 114, 381
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	2 cut(s)	178, 962
PvuI	CGATCG	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
RseI	CAYNNNNRTG	4 cut(s)	165, 327, 333, 729
SacII	CCGCGG	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	309, 557, 924
SatI	GCNGC	6 cut(s)	44, 60, 102, 171, 189, 288
Sau3AI	GATC	6 cut(s)	70, 88, 178, 880, 962, 971
Sau96I	GGNCC	4 cut(s)	19, 20, 114, 381
SchI	GAGTC	2 cut(s)	23, 101
ScrFI	CCNGG	1 cut(s)	786
SduI	GDGCHC	2 cut(s)	23, 140
SfaNI	GCATC	7 cut(s)	157, 274, 383, 391, 700, 733, 881
Sfr303I	CCGCGG	1 cut(s)	105
SgrBI	CCGCGG	1 cut(s)	105
SinI	GGWCC	2 cut(s)	114, 381
SmiMI	CAYNNNNRTG	4 cut(s)	165, 327, 333, 729
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
SphI	GCATGC	2 cut(s)	332, 421
Sse9I	AATT	5 cut(s)	310, 564, 830, 850, 1003
SseBI	AGGCCT	1 cut(s)	267
SsiI	CCGC	5 cut(s)	102, 104, 186, 189, 199
SspI	AATATT	2 cut(s)	631, 795
SspMI	CTAG	2 cut(s)	263, 656
StuI	AGGCCT	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	784
TaaI	ACNGT	3 cut(s)	614, 678, 988
TaqI	TCGA	2 cut(s)	144, 598
TasI	AATT	5 cut(s)	310, 564, 830, 850, 1003
TatI	WGTACW	1 cut(s)	490
TauI	GCSGC	2 cut(s)	104, 191
TfiI	GAWTC	4 cut(s)	9, 239, 449, 761
Tru1I	TTAA	3 cut(s)	309, 557, 924
Tru9I	TTAA	3 cut(s)	309, 557, 924
TscAI	CASTG	1 cut(s)	991
TseFI	GTSAC	1 cut(s)	871
TseI	GCWGC	4 cut(s)	43, 59, 170, 287
Tsp45I	GTSAC	1 cut(s)	871
TspDTI	ATGAA	2 cut(s)	623, 940
TspGWI	ACGGA	2 cut(s)	85, 955
TspRI	CASTG	1 cut(s)	991
VpaK11BI	GGWCC	2 cut(s)	114, 381
XapI	RAATTY	1 cut(s)	850
XbaI	TCTAGA	1 cut(s)	655
XceI	RCATGY	2 cut(s)	332, 421
XmiI	GTMKAC	1 cut(s)	693
XspI	CTAG	2 cut(s)	263, 656
Zsp2I	ATGCAT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.