Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2626 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 809 |
| Acc16I | TGCGCA | 1 cut(s) | 2157 |
| Acc36I | ACCTGC | 3 cut(s) | 464, 2210, 2626 |
| AccB1I | GGYRCC | 1 cut(s) | 314 |
| AccBSI | CCGCTC | 1 cut(s) | 9 |
| AccI | GTMKAC | 2 cut(s) | 210, 2537 |
| AccII | CGCG | 1 cut(s) | 303 |
| AclWI | GGATC | 5 cut(s) | 530, 863, 1199, 1268, 2100 |
| AcoI | YGGCCR | 1 cut(s) | 441 |
| AcsI | RAATTY | 4 cut(s) | 665, 1311, 1613, 2554 |
| AcuI | CTGAAG | 6 cut(s) | 68, 894, 987, 1425, 1898, 2915 |
| AcvI | CACGTG | 1 cut(s) | 2984 |
| AcyI | GRCGYC | 1 cut(s) | 3265 |
| AfaI | GTAC | 3 cut(s) | 1036, 2423, 2676 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 40, 488, 3189, 3261 |
| AflIII | ACRYGT | 4 cut(s) | 289, 1138, 2281, 2981 |
| AgeI | ACCGGT | 1 cut(s) | 436 |
| AjnI | CCWGG | 6 cut(s) | 361, 990, 2135, 2959, 3019, 3254 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2192, 2224 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3226, 3258 |
| Alw21I | GWGCWC | 4 cut(s) | 33, 736, 1337, 1912 |
| Alw26I | GTCTC | 7 cut(s) | 100, 416, 568, 817, 952, 1355, 2843 |
| Alw44I | GTGCAC | 1 cut(s) | 1333 |
| AlwI | GGATC | 5 cut(s) | 530, 863, 1199, 1268, 2100 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1277, 2618 |
| Ama87I | CYCGRG | 2 cut(s) | 274, 1905 |
| AoxI | GGCC | 4 cut(s) | 387, 441, 544, 672 |
| ApaLI | GTGCAC | 1 cut(s) | 1333 |
| ApoI | RAATTY | 4 cut(s) | 665, 1311, 1613, 2554 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 216, 248, 877, 909 |
| AsiGI | ACCGGT | 1 cut(s) | 436 |
| AspA2I | CCTAGG | 1 cut(s) | 541 |
| AspLEI | GCGC | 2 cut(s) | 459, 2158 |
| AspS9I | GGNCC | 2 cut(s) | 2002, 2351 |
| AsuC2I | CCSGG | 2 cut(s) | 103, 691 |
| AsuHPI | GGTGA | 4 cut(s) | 689, 1073, 1517, 3027 |
| AsuII | TTCGAA | 1 cut(s) | 2576 |
| AsuNHI | GCTAGC | 1 cut(s) | 2059 |
| AvaI | CYCGRG | 2 cut(s) | 274, 1905 |
| AvaII | GGWCC | 2 cut(s) | 2002, 2351 |
| AvrII | CCTAGG | 1 cut(s) | 541 |
| BaeGI | GKGCMC | 1 cut(s) | 1337 |
| BalI | TGGCCA | 1 cut(s) | 443 |
| BanI | GGYRCC | 1 cut(s) | 314 |
| BanII | GRGCYC | 1 cut(s) | 33 |
| BauI | CACGAG | 2 cut(s) | 516, 1954 |
| BbrPI | CACGTG | 1 cut(s) | 2984 |
| BbsI | GAAGAC | 1 cut(s) | 673 |
| Bbv12I | GWGCWC | 4 cut(s) | 33, 736, 1337, 1912 |
| BbvCI | CCTCAGC | 1 cut(s) | 2083 |
| BccI | CCATC | 5 cut(s) | 34, 1401, 1685, 1891, 2364 |
| BceAI | ACGGC | 2 cut(s) | 367, 2583 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 323, 357 |
| BciT130I | CCWGG | 6 cut(s) | 363, 992, 2137, 2961, 3021, 3256 |
| BclI | TGATCA | 1 cut(s) | 2559 |
| BcnI | CCSGG | 2 cut(s) | 103, 691 |
| BcoDI | GTCTC | 7 cut(s) | 100, 416, 568, 817, 952, 1355, 2843 |
| BfaI | CTAG | 5 cut(s) | 542, 1340, 1353, 2060, 2309 |
| BfmI | CTRYAG | 5 cut(s) | 471, 1001, 1746, 2447, 3217 |
| BfuAI | ACCTGC | 3 cut(s) | 464, 2210, 2626 |
| BglII | AGATCT | 2 cut(s) | 1216, 1932 |
| BlnI | CCTAGG | 1 cut(s) | 541 |
| BlpI | GCTNAGC | 2 cut(s) | 242, 2700 |
| Bme1390I | CCNGG | 8 cut(s) | 103, 363, 691, 992, 2137, 2961, 3021, 3256 |
| Bme18I | GGWCC | 2 cut(s) | 2002, 2351 |
| BmeT110I | CYCGRG | 2 cut(s) | 274, 1905 |
| BmgT120I | GGNCC | 2 cut(s) | 2002, 2351 |
| BmiI | GGNNCC | 8 cut(s) | 299, 316, 1010, 1263, 2003, 2004, 2352, 2353 |
| BmrFI | CCNGG | 8 cut(s) | 103, 363, 691, 992, 2137, 2961, 3021, 3256 |
| BmrI | ACTGGG | 3 cut(s) | 1026, 2000, 3201 |
| BmtI | GCTAGC | 1 cut(s) | 2063 |
| BmuI | ACTGGG | 3 cut(s) | 1026, 2000, 3201 |
| BpiI | GAAGAC | 1 cut(s) | 673 |
| BpmI | CTGGAG | 5 cut(s) | 20, 1280, 1644, 2249, 3238 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2083, 2547, 2792 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 242, 2700 |
| Bpu14I | TTCGAA | 1 cut(s) | 2576 |
| BpuEI | CTTGAG | 4 cut(s) | 592, 1346, 2852, 3116 |
| BpuMI | CCSGG | 2 cut(s) | 103, 691 |
| BsaAI | YACGTR | 2 cut(s) | 1382, 2984 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1431 |
| BsaHI | GRCGYC | 1 cut(s) | 3265 |
| BsaI | GGTCTC | 2 cut(s) | 100, 2843 |
| BsaJI | CCNNGG | 8 cut(s) | 301, 482, 541, 547, 609, 675, 991, 3020 |
| BsaWI | WCCGGW | 1 cut(s) | 436 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1253, 1283, 3226, 3256 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 40, 488, 3189, 3261 |
| Bse118I | RCCGGY | 2 cut(s) | 436, 2970 |
| Bse1I | ACTGG | 5 cut(s) | 1032, 1507, 2006, 3201, 3207 |
| Bse3DI | GCAATG | 1 cut(s) | 2094 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1431 |
| BseBI | CCWGG | 6 cut(s) | 363, 992, 2137, 2961, 3021, 3256 |
| BseDI | CCNNGG | 8 cut(s) | 301, 482, 541, 547, 609, 675, 991, 3020 |
| BseGI | GGATG | 6 cut(s) | 31, 235, 619, 1625, 1965, 3030 |
| BseJI | GATNNNNATC | 1 cut(s) | 1431 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 40, 488, 3189, 3261 |
| BseMI | GCAATG | 1 cut(s) | 2094 |
| BseNI | ACTGG | 5 cut(s) | 1032, 1507, 2006, 3201, 3207 |
| BseRI | GAGGAG | 4 cut(s) | 23, 126, 129, 132 |
| BseSI | GKGCMC | 1 cut(s) | 1337 |
| BseYI | CCCAGC | 1 cut(s) | 3060 |
| BsgI | GTGCAG | 1 cut(s) | 2642 |
| Bsh1236I | CGCG | 1 cut(s) | 303 |
| BshFI | GGCC | 4 cut(s) | 389, 443, 546, 674 |
| BshNI | GGYRCC | 1 cut(s) | 314 |
| BshTI | ACCGGT | 1 cut(s) | 436 |
| BsiHKAI | GWGCWC | 4 cut(s) | 33, 736, 1337, 1912 |
| BsiHKCI | CYCGRG | 2 cut(s) | 274, 1905 |
| BsiSI | CCGG | 5 cut(s) | 103, 146, 437, 691, 2971 |
| BslFI | GGGAC | 5 cut(s) | 362, 504, 898, 1988, 2337 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 40, 488, 3189, 3261 |
| BsmAI | GTCTC | 7 cut(s) | 100, 416, 568, 817, 952, 1355, 2843 |
| BsmBI | CGTCTC | 1 cut(s) | 817 |
| BsmFI | GGGAC | 5 cut(s) | 362, 504, 898, 1988, 2337 |
| BsmI | GAATGC | 4 cut(s) | 420, 1002, 1577, 2727 |
| BsnI | GGCC | 4 cut(s) | 389, 443, 546, 674 |
| Bso31I | GGTCTC | 2 cut(s) | 100, 2843 |
| BsoBI | CYCGRG | 2 cut(s) | 274, 1905 |
| Bsp119I | TTCGAA | 1 cut(s) | 2576 |
| Bsp1286I | GDGCHC | 4 cut(s) | 33, 736, 1337, 1912 |
| Bsp1407I | TGTACA | 2 cut(s) | 2421, 2674 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 242, 2700 |
| BspANI | GGCC | 4 cut(s) | 389, 443, 546, 674 |
| BspFNI | CGCG | 1 cut(s) | 303 |
| BspHI | TCATGA | 1 cut(s) | 1345 |
| BspLI | GGNNCC | 8 cut(s) | 299, 316, 1010, 1263, 2003, 2004, 2352, 2353 |
| BspMAI | CTGCAG | 2 cut(s) | 475, 1005 |
| BspMI | ACCTGC | 3 cut(s) | 464, 2210, 2626 |
| BspOI | GCTAGC | 1 cut(s) | 2063 |
| BspPI | GGATC | 5 cut(s) | 530, 863, 1199, 1268, 2100 |
| BspQI | GCTCTTC | 2 cut(s) | 313, 2397 |
| BspT104I | TTCGAA | 1 cut(s) | 2576 |
| BspT107I | GGYRCC | 1 cut(s) | 314 |
| BspTNI | GGTCTC | 2 cut(s) | 100, 2843 |
| BsrBI | CCGCTC | 1 cut(s) | 9 |
| BsrDI | GCAATG | 1 cut(s) | 2094 |
| BsrFI | RCCGGY | 2 cut(s) | 436, 2970 |
| BsrGI | TGTACA | 2 cut(s) | 2421, 2674 |
| BsrI | ACTGG | 5 cut(s) | 1032, 1507, 2006, 3201, 3207 |
| BssAI | RCCGGY | 2 cut(s) | 436, 2970 |
| BssECI | CCNNGG | 8 cut(s) | 301, 482, 541, 547, 609, 675, 991, 3020 |
| BssNAI | GTATAC | 1 cut(s) | 2538 |
| BssNI | GRCGYC | 1 cut(s) | 3265 |
| BssSI | CACGAG | 2 cut(s) | 516, 1954 |
| BssT1I | CCWWGG | 4 cut(s) | 482, 541, 609, 675 |
| Bst1107I | GTATAC | 1 cut(s) | 2538 |
| Bst2BI | CACGAG | 2 cut(s) | 516, 1954 |
| Bst2UI | CCWGG | 6 cut(s) | 363, 992, 2137, 2961, 3021, 3256 |
| Bst4CI | ACNGT | 8 cut(s) | 90, 1240, 1251, 1975, 2364, 2451, 2535, 3031 |
| Bst6I | CTCTTC | 6 cut(s) | 313, 1143, 2307, 2397, 2463, 2511 |
| BstACI | GRCGYC | 1 cut(s) | 3265 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 292, 2618 |
| BstAUI | TGTACA | 2 cut(s) | 2421, 2674 |
| BstBAI | YACGTR | 2 cut(s) | 1382, 2984 |
| BstBI | TTCGAA | 1 cut(s) | 2576 |
| BstC8I | GCNNGC | 7 cut(s) | 396, 400, 1965, 2061, 2822, 2976, 3121 |
| BstDSI | CCRYGG | 1 cut(s) | 301 |
| BstF5I | GGATG | 6 cut(s) | 31, 235, 619, 1625, 1965, 3030 |
| BstFNI | CGCG | 1 cut(s) | 303 |
| BstHHI | GCGC | 2 cut(s) | 459, 2158 |
| BstMAI | GTCTC | 7 cut(s) | 100, 416, 568, 817, 952, 1355, 2843 |
| BstNI | CCWGG | 6 cut(s) | 363, 992, 2137, 2961, 3021, 3256 |
| BstNSI | RCATGY | 4 cut(s) | 380, 2285, 2681, 3123 |
| BstSCI | CCNGG | 8 cut(s) | 101, 361, 689, 990, 2135, 2959, 3019, 3254 |
| BstSFI | CTRYAG | 5 cut(s) | 471, 1001, 1746, 2447, 3217 |
| BstSLI | GKGCMC | 1 cut(s) | 1337 |
| BstUI | CGCG | 1 cut(s) | 303 |
| BstV2I | GAAGAC | 1 cut(s) | 673 |
| BstX2I | RGATCY | 4 cut(s) | 1204, 1216, 1273, 1932 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1581 |
| BstYI | RGATCY | 4 cut(s) | 1204, 1216, 1273, 1932 |
| BstZ17I | GTATAC | 1 cut(s) | 2538 |
| BsuRI | GGCC | 4 cut(s) | 389, 443, 546, 674 |
| BtgI | CCRYGG | 1 cut(s) | 301 |
| BtgZI | GCGATG | 1 cut(s) | 273 |
| BtsCI | GGATG | 6 cut(s) | 31, 235, 619, 1625, 1965, 3030 |
| BtsI | GCAGTG | 3 cut(s) | 19, 468, 3006 |
| BtsIMutI | CAGTG | 4 cut(s) | 19, 468, 3006, 3194 |
| BveI | ACCTGC | 3 cut(s) | 464, 2210, 2626 |
| Cac8I | GCNNGC | 7 cut(s) | 396, 400, 1965, 2061, 2822, 2976, 3121 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1277, 2618 |
| CciI | TCATGA | 1 cut(s) | 1345 |
| CfoI | GCGC | 2 cut(s) | 459, 2158 |
| Cfr10I | RCCGGY | 2 cut(s) | 436, 2970 |
| Cfr13I | GGNCC | 2 cut(s) | 2002, 2351 |
| Cfr42I | CCGCGG | 1 cut(s) | 304 |
| CseI | GACGC | 3 cut(s) | 453, 771, 3254 |
| CsiI | ACCWGGT | 1 cut(s) | 2135 |
| Csp6I | GTAC | 3 cut(s) | 1035, 2422, 2675 |
| CspAI | ACCGGT | 1 cut(s) | 436 |
| CviQI | GTAC | 3 cut(s) | 1035, 2422, 2675 |
| DraI | TTTAAA | 3 cut(s) | 1177, 1293, 2859 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 809 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 809 |
| EaeI | YGGCCR | 1 cut(s) | 441 |
| Eam1104I | CTCTTC | 6 cut(s) | 313, 1143, 2307, 2397, 2463, 2511 |
| EarI | CTCTTC | 6 cut(s) | 313, 1143, 2307, 2397, 2463, 2511 |
| Ecl136II | GAGCTC | 1 cut(s) | 31 |
| Eco130I | CCWWGG | 4 cut(s) | 482, 541, 609, 675 |
| Eco147I | AGGCCT | 1 cut(s) | 546 |
| Eco24I | GRGCYC | 1 cut(s) | 33 |
| Eco31I | GGTCTC | 2 cut(s) | 100, 2843 |
| Eco32I | GATATC | 1 cut(s) | 838 |
| Eco47I | GGWCC | 2 cut(s) | 2002, 2351 |
| Eco53kI | GAGCTC | 1 cut(s) | 31 |
| Eco57I | CTGAAG | 6 cut(s) | 68, 894, 987, 1425, 1898, 2915 |
| Eco72I | CACGTG | 1 cut(s) | 2984 |
| Eco88I | CYCGRG | 2 cut(s) | 274, 1905 |
| EcoICRI | GAGCTC | 1 cut(s) | 31 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2002, 2351 |
| EcoRI | GAATTC | 1 cut(s) | 1311 |
| EcoRII | CCWGG | 6 cut(s) | 361, 990, 2135, 2959, 3019, 3254 |
| EcoRV | GATATC | 1 cut(s) | 838 |
| EcoT14I | CCWWGG | 4 cut(s) | 482, 541, 609, 675 |
| EcoT22I | ATGCAT | 2 cut(s) | 908, 1170 |
| EcoT38I | GRGCYC | 1 cut(s) | 33 |
| ErhI | CCWWGG | 4 cut(s) | 482, 541, 609, 675 |
| Esp3I | CGTCTC | 1 cut(s) | 817 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1578, 1610, 2391, 2423, 2898, 2930, 3078, 3110 |
| FaqI | GGGAC | 5 cut(s) | 362, 504, 898, 1988, 2337 |
| FauI | CCCGC | 1 cut(s) | 1956 |
| FauNDI | CATATG | 1 cut(s) | 1756 |
| FbaI | TGATCA | 1 cut(s) | 2559 |
| FblI | GTMKAC | 2 cut(s) | 210, 2537 |
| FokI | GGATG | 6 cut(s) | 38, 242, 626, 1612, 1972, 3037 |
| FriOI | GRGCYC | 1 cut(s) | 33 |
| FspBI | CTAG | 5 cut(s) | 542, 1340, 1353, 2060, 2309 |
| FspI | TGCGCA | 1 cut(s) | 2157 |
| GlaI | GCGC | 2 cut(s) | 458, 2157 |
| GsaI | CCCAGC | 1 cut(s) | 3064 |
| GsuI | CTGGAG | 5 cut(s) | 20, 1280, 1644, 2249, 3238 |
| HaeIII | GGCC | 4 cut(s) | 389, 443, 546, 674 |
| HapII | CCGG | 5 cut(s) | 103, 146, 437, 691, 2971 |
| HgaI | GACGC | 3 cut(s) | 453, 771, 3254 |
| HhaI | GCGC | 2 cut(s) | 459, 2158 |
| Hin1I | GRCGYC | 1 cut(s) | 3265 |
| Hin6I | GCGC | 2 cut(s) | 457, 2156 |
| HinP1I | GCGC | 2 cut(s) | 457, 2156 |
| HincII | GTYRAC | 1 cut(s) | 211 |
| HindII | GTYRAC | 1 cut(s) | 211 |
| HpaII | CCGG | 5 cut(s) | 103, 146, 437, 691, 2971 |
| HphI | GGTGA | 4 cut(s) | 689, 1073, 1517, 3027 |
| Hpy166II | GTNNAC | 6 cut(s) | 211, 382, 468, 1335, 2279, 2538 |
| Hpy8I | GTNNAC | 6 cut(s) | 211, 382, 468, 1335, 2279, 2538 |
| Hpy99I | CGWCG | 7 cut(s) | 215, 218, 221, 224, 338, 359, 3270 |
| HpyCH4III | ACNGT | 8 cut(s) | 90, 1240, 1251, 1975, 2364, 2451, 2535, 3031 |
| HpyCH4IV | ACGT | 6 cut(s) | 123, 289, 1138, 1381, 2983, 3169 |
| HpySE526I | ACGT | 6 cut(s) | 123, 289, 1138, 1381, 2983, 3169 |
| Hsp92I | GRCGYC | 1 cut(s) | 3265 |
| HspAI | GCGC | 2 cut(s) | 457, 2156 |
| KflI | GGGWCCC | 2 cut(s) | 2002, 2351 |
| Ksp22I | TGATCA | 1 cut(s) | 2559 |
| KspI | CCGCGG | 1 cut(s) | 304 |
| LguI | GCTCTTC | 2 cut(s) | 313, 2397 |
| LmnI | GCTCC | 7 cut(s) | 36, 52, 1255, 1261, 1885, 2230, 2609 |
| MabI | ACCWGGT | 1 cut(s) | 2135 |
| MaeI | CTAG | 5 cut(s) | 542, 1340, 1353, 2060, 2309 |
| MaeII | ACGT | 6 cut(s) | 123, 289, 1138, 1381, 2983, 3169 |
| MaeIII | GTNAC | 6 cut(s) | 2477, 2796, 2938, 3033, 3078, 3192 |
| MbiI | CCGCTC | 1 cut(s) | 9 |
| MfeI | CAATTG | 2 cut(s) | 782, 828 |
| MflI | RGATCY | 4 cut(s) | 1204, 1216, 1273, 1932 |
| MhlI | GDGCHC | 4 cut(s) | 33, 736, 1337, 1912 |
| MlsI | TGGCCA | 1 cut(s) | 443 |
| MluNI | TGGCCA | 1 cut(s) | 443 |
| MmeI | TCCRAC | 4 cut(s) | 618, 629, 1233, 1666 |
| Mox20I | TGGCCA | 1 cut(s) | 443 |
| Mph1103I | ATGCAT | 2 cut(s) | 908, 1170 |
| MscI | TGGCCA | 1 cut(s) | 443 |
| MseI | TTAA | 9 cut(s) | 447, 744, 851, 1176, 1292, 1547, 1943, 2120, 2858 |
| Msp20I | TGGCCA | 1 cut(s) | 443 |
| MspA1I | CMGCKG | 4 cut(s) | 255, 303, 716, 1608 |
| MspI | CCGG | 5 cut(s) | 103, 146, 437, 691, 2971 |
| MspR9I | CCNGG | 8 cut(s) | 103, 363, 691, 992, 2137, 2961, 3021, 3256 |
| MunI | CAATTG | 2 cut(s) | 782, 828 |
| Mva1269I | GAATGC | 4 cut(s) | 420, 1002, 1577, 2727 |
| MvaI | CCWGG | 6 cut(s) | 363, 992, 2137, 2961, 3021, 3256 |
| MvnI | CGCG | 1 cut(s) | 303 |
| NciI | CCSGG | 2 cut(s) | 103, 691 |
| NdeI | CATATG | 1 cut(s) | 1756 |
| NheI | GCTAGC | 1 cut(s) | 2059 |
| NlaIV | GGNNCC | 8 cut(s) | 299, 316, 1010, 1263, 2003, 2004, 2352, 2353 |
| NmeAIII | GCCGAG | 3 cut(s) | 415, 528, 2703 |
| NmuCI | GTSAC | 5 cut(s) | 2477, 2796, 2938, 3033, 3192 |
| NsbI | TGCGCA | 1 cut(s) | 2157 |
| NsiI | ATGCAT | 2 cut(s) | 908, 1170 |
| NspI | RCATGY | 4 cut(s) | 380, 2285, 2681, 3123 |
| NspV | TTCGAA | 1 cut(s) | 2576 |
| PaeI | GCATGC | 1 cut(s) | 3123 |
| PaeR7I | CTCGAG | 2 cut(s) | 274, 1905 |
| PagI | TCATGA | 1 cut(s) | 1345 |
| PaqCI | CACCTGC | 1 cut(s) | 2626 |
| PceI | AGGCCT | 1 cut(s) | 546 |
| PciI | ACATGT | 1 cut(s) | 2281 |
| PciSI | GCTCTTC | 2 cut(s) | 313, 2397 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 216, 219, 406, 415, 2573 |
| PctI | GAATGC | 4 cut(s) | 420, 1002, 1577, 2727 |
| PflFI | GACNNNGTC | 2 cut(s) | 2137, 3031 |
| PfoI | TCCNGGA | 4 cut(s) | 101, 689, 2959, 3254 |
| PinAI | ACCGGT | 1 cut(s) | 436 |
| PmaCI | CACGTG | 1 cut(s) | 2984 |
| PmlI | CACGTG | 1 cut(s) | 2984 |
| Ppu21I | YACGTR | 2 cut(s) | 1382, 2984 |
| PpuMI | RGGWCCY | 2 cut(s) | 2002, 2351 |
| PscI | ACATGT | 1 cut(s) | 2281 |
| Psp124BI | GAGCTC | 1 cut(s) | 33 |
| Psp5II | RGGWCCY | 2 cut(s) | 2002, 2351 |
| Psp6I | CCWGG | 6 cut(s) | 361, 990, 2135, 2959, 3019, 3254 |
| PspCI | CACGTG | 1 cut(s) | 2984 |
| PspFI | CCCAGC | 1 cut(s) | 3060 |
| PspGI | CCWGG | 6 cut(s) | 361, 990, 2135, 2959, 3019, 3254 |
| PspN4I | GGNNCC | 8 cut(s) | 299, 316, 1010, 1263, 2003, 2004, 2352, 2353 |
| PspPI | GGNCC | 2 cut(s) | 2002, 2351 |
| PspPPI | RGGWCCY | 2 cut(s) | 2002, 2351 |
| PspXI | VCTCGAGB | 1 cut(s) | 1905 |
| PstI | CTGCAG | 2 cut(s) | 475, 1005 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1277, 2618 |
| PsuI | RGATCY | 4 cut(s) | 1204, 1216, 1273, 1932 |
| PsyI | GACNNNGTC | 2 cut(s) | 2137, 3031 |
| PvuII | CAGCTG | 1 cut(s) | 716 |
| RsaI | GTAC | 3 cut(s) | 1036, 2423, 2676 |
| RsaNI | GTAC | 3 cut(s) | 1035, 2422, 2675 |
| SacI | GAGCTC | 1 cut(s) | 33 |
| SacII | CCGCGG | 1 cut(s) | 304 |
| SalI | GTCGAC | 1 cut(s) | 209 |
| SapI | GCTCTTC | 2 cut(s) | 313, 2397 |
| SaqAI | TTAA | 9 cut(s) | 447, 744, 851, 1176, 1292, 1547, 1943, 2120, 2858 |
| Sau96I | GGNCC | 2 cut(s) | 2002, 2351 |
| ScrFI | CCNGG | 8 cut(s) | 103, 363, 691, 992, 2137, 2961, 3021, 3256 |
| SduI | GDGCHC | 4 cut(s) | 33, 736, 1337, 1912 |
| SexAI | ACCWGGT | 1 cut(s) | 2135 |
| SfcI | CTRYAG | 5 cut(s) | 471, 1001, 1746, 2447, 3217 |
| Sfr274I | CTCGAG | 2 cut(s) | 274, 1905 |
| Sfr303I | CCGCGG | 1 cut(s) | 304 |
| SfuI | TTCGAA | 1 cut(s) | 2576 |
| SgrAI | CRCCGGYG | 1 cut(s) | 436 |
| SgrBI | CCGCGG | 1 cut(s) | 304 |
| SinI | GGWCC | 2 cut(s) | 2002, 2351 |
| SlaI | CTCGAG | 2 cut(s) | 274, 1905 |
| SmiI | ATTTAAAT | 1 cut(s) | 1293 |
| SmlI | CTYRAG | 6 cut(s) | 274, 571, 1325, 1905, 2831, 3095 |
| SmoI | CTYRAG | 6 cut(s) | 274, 571, 1325, 1905, 2831, 3095 |
| SphI | GCATGC | 1 cut(s) | 3123 |
| SseBI | AGGCCT | 1 cut(s) | 546 |
| SspI | AATATT | 3 cut(s) | 1804, 2386, 2843 |
| SspMI | CTAG | 5 cut(s) | 542, 1340, 1353, 2060, 2309 |
| SstI | GAGCTC | 1 cut(s) | 33 |
| StuI | AGGCCT | 1 cut(s) | 546 |
| StyD4I | CCNGG | 8 cut(s) | 101, 361, 689, 990, 2135, 2959, 3019, 3254 |
| StyI | CCWWGG | 4 cut(s) | 482, 541, 609, 675 |
| SwaI | ATTTAAAT | 1 cut(s) | 1293 |
| TaaI | ACNGT | 8 cut(s) | 90, 1240, 1251, 1975, 2364, 2451, 2535, 3031 |
| TaiI | ACGT | 6 cut(s) | 126, 292, 1141, 1384, 2986, 3172 |
| TatI | WGTACW | 3 cut(s) | 1034, 2421, 2674 |
| TauI | GCSGC | 6 cut(s) | 12, 202, 258, 306, 320, 2059 |
| Tru1I | TTAA | 9 cut(s) | 447, 744, 851, 1176, 1292, 1547, 1943, 2120, 2858 |
| Tru9I | TTAA | 9 cut(s) | 447, 744, 851, 1176, 1292, 1547, 1943, 2120, 2858 |
| TscAI | CASTG | 4 cut(s) | 19, 475, 3006, 3201 |
| TseFI | GTSAC | 5 cut(s) | 2477, 2796, 2938, 3033, 3192 |
| Tsp45I | GTSAC | 5 cut(s) | 2477, 2796, 2938, 3033, 3192 |
| TspDTI | ATGAA | 6 cut(s) | 673, 912, 1362, 1734, 1773, 2798 |
| TspGWI | ACGGA | 5 cut(s) | 871, 1655, 1717, 2038, 2057 |
| TspRI | CASTG | 4 cut(s) | 19, 475, 3006, 3201 |
| Tth111I | GACNNNGTC | 2 cut(s) | 2137, 3031 |
| VneI | GTGCAC | 1 cut(s) | 1333 |
| VpaK11BI | GGWCC | 2 cut(s) | 2002, 2351 |
| XapI | RAATTY | 4 cut(s) | 665, 1311, 1613, 2554 |
| XceI | RCATGY | 4 cut(s) | 380, 2285, 2681, 3123 |
| XhoI | CTCGAG | 2 cut(s) | 274, 1905 |
| XmaJI | CCTAGG | 1 cut(s) | 541 |
| XmiI | GTMKAC | 2 cut(s) | 210, 2537 |
| XspI | CTAG | 5 cut(s) | 542, 1340, 1353, 2060, 2309 |
| Zsp2I | ATGCAT | 2 cut(s) | 908, 1170 |