Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Reverse (-)

65859942 .. 65860900

Gene Structure 959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0529100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGATCACAGCTACCCAATTACCGTCGCATGTCGAATCAGGTGCCGTGATGATGATGAGGTTGAGCTTGGGGTTGTTGAAGATTGATGATCTTCCTCCTGAGTTGGTGTTTGAAATCCTATGTCGACTTCCTCTCCGCTCGGCTTTTCAATGCAAATGCGTGTCCAAAGATGAGAAGGATGAGCATAAATTTAACTGGACCATCTGGAATCCATACATCATGCAGCGGGTTGCTCTTCCTCGTCTACCATGTAACAATTATGTGTTCACAGAGGGAATCATATGTGAACCCTACTATAATTACCAGGAAGAAAATGGTGCTACTAGTAGTAACAGTAAAATCGTTCTTAATGTTGATTATAAGTGCAGGGTCGTGCGAATTCGTAAACTTATAGATAATTCGTTAAACATGAATATCTATTTCTCCGAAGCCGGTGAATGGAGAGAATTTGATGTACCCTCCCCGCGGACAGCTAGGGTTTACCGTTCTTCCACTAACCATGCAGGCGTTGCCTACCATGGAAAGTTGTACTGGTTGCTTAATGGTCACATTGTGGAGTTGGATGCTTTGGCAGTTGACAGTAATACTAGTAGCTATGATGTTGTTGTTAAGTACTGTCGTTTCATAGAAATTCAATTCGATAAGCCGACTTATGGGCCTAGGTGTGTGCCGAGGGCGTATGCGGGCGACGTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

232

Amino Acids

26.69

Weight (kDa)

6.94

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	28 - 56	1.9e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
AatII	GACGTC	1 cut(s)	693
AccB1I	GGYRCC	1 cut(s)	41
AccBSI	CCGCTC	1 cut(s)	138
AccI	GTMKAC	2 cut(s)	124, 244
AccII	CGCG	1 cut(s)	466
AciI	CCGC	5 cut(s)	136, 226, 464, 466, 683
AcsI	RAATTY	4 cut(s)	188, 378, 446, 630
AcyI	GRCGYC	1 cut(s)	690
AdeI	CACNNNGTG	1 cut(s)	553
AfaI	GTAC	3 cut(s)	456, 530, 614
AfiI	CCNNNNNNNGG	3 cut(s)	438, 465, 653
AgsI	TTSAA	4 cut(s)	79, 113, 149, 635
AhlI	ACTAGT	2 cut(s)	323, 587
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	4 cut(s)	11, 66, 473, 594
AluI	AGCT	4 cut(s)	11, 66, 473, 594
AoxI	GGCC	1 cut(s)	656
ApeKI	GCWGC	1 cut(s)	223
ApoI	RAATTY	4 cut(s)	188, 378, 446, 630
AspA2I	CCTAGG	1 cut(s)	659
AspS9I	GGNCC	2 cut(s)	198, 656
AsuHPI	GGTGA	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	198
AvrII	CCTAGG	1 cut(s)	659
BanI	GGYRCC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BciT130I	CCWGG	1 cut(s)	305
BclI	TGATCA	1 cut(s)	3
BcuI	ACTAGT	2 cut(s)	323, 587
BfaI	CTAG	4 cut(s)	324, 474, 588, 660
BisI	GCNGC	1 cut(s)	224
BlnI	CCTAGG	1 cut(s)	659
BlsI	GCNGC	1 cut(s)	225
BmcAI	AGTACT	1 cut(s)	614
Bme1390I	CCNGG	1 cut(s)	305
Bme18I	GGWCC	1 cut(s)	198
BmgT120I	GGNCC	2 cut(s)	198, 656
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	553
BsaHI	GRCGYC	1 cut(s)	690
BsaJI	CCNNGG	4 cut(s)	464, 517, 659, 671
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	3 cut(s)	438, 465, 653
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	2 cut(s)	200, 536
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	4 cut(s)	464, 517, 659, 671
BseGI	GGATG	2 cut(s)	184, 568
BseLI	CCNNNNNNNGG	3 cut(s)	438, 465, 653
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	2 cut(s)	200, 536
BseXI	GCAGC	1 cut(s)	235
BsgI	GTGCAG	1 cut(s)	385
Bsh1236I	CGCG	1 cut(s)	466
BshFI	GGCC	1 cut(s)	658
BshNI	GGYRCC	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	432
BslI	CCNNNNNNNGG	3 cut(s)	438, 465, 653
BsnI	GGCC	1 cut(s)	658
Bsp143I	GATC	2 cut(s)	3, 88
Bsp19I	CCATGG	1 cut(s)	517
BspACI	CCGC	5 cut(s)	136, 226, 464, 466, 683
BspANI	GGCC	1 cut(s)	658
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	431
BsrI	ACTGG	2 cut(s)	200, 536
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	4 cut(s)	464, 517, 659, 671
BssMI	GATC	2 cut(s)	3, 88
BssNI	GRCGYC	1 cut(s)	690
BssT1I	CCWWGG	2 cut(s)	517, 659
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	5 cut(s)	24, 335, 485, 581, 617
Bst6I	CTCTTC	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	690
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	505, 685
BstDEI	CTNAG	1 cut(s)	99
BstDSI	CCRYGG	2 cut(s)	464, 517
BstF5I	GGATG	2 cut(s)	184, 568
BstFNI	CGCG	1 cut(s)	466
BstKTI	GATC	2 cut(s)	6, 91
BstMBI	GATC	2 cut(s)	3, 88
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	1 cut(s)	305
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	303
BstUI	CGCG	1 cut(s)	466
BstV1I	GCAGC	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	658
BtgI	CCRYGG	2 cut(s)	464, 517
BtsCI	GGATG	2 cut(s)	184, 568
Cac8I	GCNNGC	2 cut(s)	505, 685
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	2 cut(s)	198, 656
Cfr42I	CCGCGG	1 cut(s)	467
Csp6I	GTAC	3 cut(s)	455, 529, 613
CviAII	CATG	6 cut(s)	29, 220, 249, 409, 500, 518
CviJI	RGCY	8 cut(s)	11, 66, 143, 431, 473, 594, 646, 658
CviKI_1	RGCY	8 cut(s)	11, 66, 143, 431, 473, 594, 646, 658
CviQI	GTAC	3 cut(s)	455, 529, 613
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	2 cut(s)	5, 90
DpnII	GATC	2 cut(s)	3, 88
DraIII	CACNNNGTG	1 cut(s)	553
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco130I	CCWWGG	2 cut(s)	517, 659
Eco47I	GGWCC	1 cut(s)	198
EcoRI	GAATTC	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	2 cut(s)	517, 659
ErhI	CCWWGG	2 cut(s)	517, 659
FaeI	CATG	6 cut(s)	32, 223, 252, 412, 503, 521
FatI	CATG	6 cut(s)	28, 219, 248, 408, 499, 517
FauI	CCCGC	3 cut(s)	219, 471, 676
FauNDI	CATATG	1 cut(s)	281
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	124, 244
Fnu4HI	GCNGC	1 cut(s)	224
FokI	GGATG	2 cut(s)	191, 575
Fsp4HI	GCNGC	1 cut(s)	224
FspBI	CTAG	4 cut(s)	324, 474, 588, 660
GluI	GCNGC	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	658
HapII	CCGG	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	690
Hin1II	CATG	6 cut(s)	32, 223, 252, 412, 503, 521
HincII	GTYRAC	2 cut(s)	125, 577
HindII	GTYRAC	2 cut(s)	125, 577
HinfI	GANTC	3 cut(s)	35, 208, 276
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	7 cut(s)	125, 245, 267, 287, 386, 481, 577
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	2 cut(s)	98, 205
Hpy8I	GTNNAC	7 cut(s)	125, 245, 267, 287, 386, 481, 577
Hpy99I	CGWCG	3 cut(s)	28, 692, 695
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	5 cut(s)	24, 335, 485, 581, 617
HpyCH4IV	ACGT	1 cut(s)	690
HpyCH4V	TGCA	4 cut(s)	153, 223, 366, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	690
Hsp92I	GRCGYC	1 cut(s)	690
Hsp92II	CATG	6 cut(s)	32, 223, 252, 412, 503, 521
Ksp22I	TGATCA	1 cut(s)	3
KspI	CCGCGG	1 cut(s)	467
Kzo9I	GATC	2 cut(s)	3, 88
LguI	GCTCTTC	1 cut(s)	240
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	1 cut(s)	553
MaeI	CTAG	4 cut(s)	324, 474, 588, 660
MaeII	ACGT	1 cut(s)	690
MaeIII	GTNAC	3 cut(s)	251, 329, 545
MalI	GATC	2 cut(s)	5, 90
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	2 cut(s)	3, 88
MboII	GAAGA	5 cut(s)	83, 91, 227, 320, 480
MluCI	AATT	9 cut(s)	17, 188, 256, 298, 378, 397, 446, 630, 635
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	7 cut(s)	51, 105, 141, 249, 265, 469, 666
MseI	TTAA	5 cut(s)	192, 348, 404, 540, 609
MspA1I	CMGCKG	2 cut(s)	226, 466
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	466
MwoI	GCNNNNNNNGC	1 cut(s)	509
NcoI	CCATGG	1 cut(s)	517
NdeI	CATATG	1 cut(s)	281
NdeII	GATC	2 cut(s)	3, 88
NlaIII	CATG	6 cut(s)	32, 223, 252, 412, 503, 521
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	2 cut(s)	119, 696
NmuCI	GTSAC	1 cut(s)	545
NspI	RCATGY	1 cut(s)	32
PciSI	GCTCTTC	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	35, 208, 276
PkrI	GCNGC	1 cut(s)	225
PsiI	TTATAA	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	198, 656
RsaI	GTAC	3 cut(s)	456, 530, 614
RsaNI	GTAC	3 cut(s)	455, 529, 613
SacII	CCGCGG	1 cut(s)	467
SalI	GTCGAC	1 cut(s)	123
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	5 cut(s)	192, 348, 404, 540, 609
SatI	GCNGC	1 cut(s)	224
Sau3AI	GATC	2 cut(s)	3, 88
Sau96I	GGNCC	2 cut(s)	198, 656
ScaI	AGTACT	1 cut(s)	614
ScrFI	CCNGG	1 cut(s)	305
SetI	ASST	8 cut(s)	13, 43, 62, 68, 475, 596, 665, 693
SfaNI	GCATC	1 cut(s)	553
Sfr303I	CCGCGG	1 cut(s)	467
SgrBI	CCGCGG	1 cut(s)	467
SinI	GGWCC	1 cut(s)	198
SpeI	ACTAGT	2 cut(s)	323, 587
Sse9I	AATT	9 cut(s)	17, 188, 256, 298, 378, 397, 446, 630, 635
SsiI	CCGC	5 cut(s)	136, 226, 464, 466, 683
SspMI	CTAG	4 cut(s)	324, 474, 588, 660
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	2 cut(s)	517, 659
TaaI	ACNGT	5 cut(s)	24, 335, 485, 581, 617
TaiI	ACGT	1 cut(s)	693
TaqI	TCGA	3 cut(s)	33, 124, 639
TasI	AATT	9 cut(s)	17, 188, 256, 298, 378, 397, 446, 630, 635
TatI	WGTACW	2 cut(s)	528, 612
TfiI	GAWTC	3 cut(s)	35, 208, 276
Tru1I	TTAA	5 cut(s)	192, 348, 404, 540, 609
Tru9I	TTAA	5 cut(s)	192, 348, 404, 540, 609
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	2 cut(s)	425, 613
VpaK11BI	GGWCC	1 cut(s)	198
XapI	RAATTY	4 cut(s)	188, 378, 446, 630
XceI	RCATGY	1 cut(s)	32
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XmaJI	CCTAGG	1 cut(s)	659
XmiI	GTMKAC	2 cut(s)	124, 244
XspI	CTAG	4 cut(s)	324, 474, 588, 660
ZraI	GACGTC	1 cut(s)	691
ZrmI	AGTACT	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.