Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Reverse (-)

18910668 .. 18911709

Gene Structure 1042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0105700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGATTTGCAGCCATTATGCCCCATTTCATTCTGATATGGAGATATCTATACCTAATAAGCCATGTTCGAAAACCAAGTGCTTTCTCTTCCATCGCCTATATGAGGTCTGTGATTTTAATCTTCGACATTACAAAAGCAATACAACAGATGGTTATGCAGAAGGTGAGGCAGCGCTGGGACTCTATGCAGAGCCTAGGCCACCGGTTTCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

71

Amino Acids

8.11

Weight (kDa)

6.38

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfeI	AGCGCT	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgeI	ACCGGT	1 cut(s)	202
Aor51HI	AGCGCT	1 cut(s)	174
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	2 cut(s)	9, 170
AsiGI	ACCGGT	1 cut(s)	202
AspA2I	CCTAGG	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	176
AsuII	TTCGAA	1 cut(s)	68
AvrII	CCTAGG	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	21, 182
BccI	CCATC	2 cut(s)	99, 143
BfaI	CTAG	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	176
BisI	GCNGC	2 cut(s)	10, 171
BlnI	CCTAGG	1 cut(s)	194
BlsI	GCNGC	2 cut(s)	11, 172
Bpu14I	TTCGAA	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	194
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse118I	RCCGGY	1 cut(s)	202
Bse8I	GATNNNNATC	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	194
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseXI	GCAGC	2 cut(s)	21, 182
BseYI	CCCAGC	1 cut(s)	175
BshFI	GGCC	1 cut(s)	199
BshTI	ACCGGT	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	199
Bsp119I	TTCGAA	1 cut(s)	68
BspANI	GGCC	1 cut(s)	199
BspT104I	TTCGAA	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	92
BstBI	TTCGAA	1 cut(s)	68
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstV1I	GCAGC	2 cut(s)	21, 182
BsuRI	GGCC	1 cut(s)	199
BtgZI	GCGATG	1 cut(s)	77
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	202
CspAI	ACCGGT	1 cut(s)	202
CviAII	CATG	1 cut(s)	63
CviJI	RGCY	4 cut(s)	12, 61, 193, 199
CviKI_1	RGCY	4 cut(s)	12, 61, 193, 199
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	194
Eco32I	GATATC	1 cut(s)	45
Eco47III	AGCGCT	1 cut(s)	174
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoRV	GATATC	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	1 cut(s)	66
FaiI	YATR	8 cut(s)	18, 38, 50, 64, 100, 102, 156, 186
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	1 cut(s)	62
Fnu4HI	GCNGC	2 cut(s)	10, 171
Fsp4HI	GCNGC	2 cut(s)	10, 171
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	2 cut(s)	10, 171
GsaI	CCCAGC	1 cut(s)	179
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	66
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	1 cut(s)	180
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	155
HpyCH4V	TGCA	3 cut(s)	9, 158, 188
Hsp92II	CATG	1 cut(s)	66
HspAI	GCGC	1 cut(s)	173
LpnPI	CCDG	1 cut(s)	161
Lsp1109I	GCAGC	2 cut(s)	21, 182
MaeI	CTAG	1 cut(s)	195
MboII	GAAGA	2 cut(s)	79, 113
MlyI	GAGTC	1 cut(s)	174
MnlI	CCTC	2 cut(s)	97, 160
MseI	TTAA	2 cut(s)	117, 214
MspI	CCGG	1 cut(s)	203
NlaIII	CATG	1 cut(s)	66
NspV	TTCGAA	1 cut(s)	68
PinAI	ACCGGT	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	11, 172
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	117, 214
SatI	GCNGC	2 cut(s)	10, 171
SchI	GAGTC	1 cut(s)	174
SetI	ASST	3 cut(s)	55, 108, 166
SfuI	TTCGAA	1 cut(s)	68
SgeI	CNNG	4 cut(s)	75, 88, 188, 207
SspMI	CTAG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	194
TaqI	TCGA	2 cut(s)	68, 124
Tru1I	TTAA	2 cut(s)	117, 214
Tru9I	TTAA	2 cut(s)	117, 214
TseI	GCWGC	2 cut(s)	9, 170
TspDTI	ATGAA	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	101
XmaJI	CCTAGG	1 cut(s)	194
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.