Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0021623

Physical Location & Seq

Genomic Coordinates Forward (+)

204234 .. 213083

Gene Structure 8850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0000800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2019 bp

ATGTCCGGCATGTTGAGATGGCAGAAGCTAAAGCATATAGCACAGCTCCACCAGCGGTTCACTCAAGTATCCGCAATCTCCACGCACCTGCACCACTTCAATATCACTAGCCATCATCGCCGAAGAGAGTCTCTCATCGGAGTGCAGGCGCGCTACAAGTGGGATCACGGCGGCTCCGGCGATGCTCGCACCACCCGTAAAATCAGGGCAGAGGCCAACTGCCCGCGCTGCTCCTTCAACCGTATGGACCTCATCTTCTCCGATCGCCGCTTACCTAACTTATCCCATCCTCCTCCGCCGGCGGAGGAGGCCGGAAAGAATGGCTCTGAGCTTCAGTATCAGGCCCTCAATCTCTGCCCCAATTGCAAGACCGCCTACTACTTCCGACCTCACCAGGTTGCTCCCCTCCAAGGCACTTTCGTGGAGATTGGGAGGCTCACCAACACTAACACAACCTCTTCCAATCGTAACGCCACCAAAATCAAAACCAGTGGTTCCAATCCCAATACCACAAACGACGATACTAATGGTCTGAGGGCATCCTTCTGGGACACTCTGAGATCATATGCTAATGCTAATGGGGCGTCGGAGCCACCTGGCAATTGGCCTCAGCCTCCCCCTGGCAATGGACTTGCTGTGCATACGCCCCCGGGCCCACCTTTTGCACCTGGAGTTAATGTCATTCGCGCTACTGGAGATGCAGATGCAGATGCTGGAGACAAGAAGACTGCCTGGGGCGGCTCCAATTTGGGAAAGGATTTGCCCACTCCTAAGGAGATCTGCAAGGGTCTTGATAAGTTCGTTATTGGCCAACAAAGAGCCAAAAAGGTGCTTTCTGTAGCTGTTTATAACCACTACAAACGAATTTATCATGCCTCCTTGCACAAAGGGTCAGCAGCAGAATCAGGAAAACCAAACACAATAGATAAAGAAGATAATGTAGAGCTAGAAAAGAGCAATGTGCTCTTGATGGGCCCAACTGGATCTGGGAAGACGTTGCTTGCAAAAACACTAGCTCGATTTGTGAATGTGCCATTTGTCATTACTGATGCAACGAATTTAACACAGGCTGGTTATGTTGGGGAAGATGTCGAATCAATATTGCAAAAACTATTGGCGGCAGCTGACTTCAATGTACAAGCAGCTCAACAAGGGATTGTTTACATTGATGAAGTTGACAAGATAACTAAGAAGGCTGAGAGTTTAAACATTAGCAGAGATGTTTCTGGAGAGGGTGTTCAGCAGGCTTTACTGAAAATGCTCGAAGGAACTATAGTGAACGTTCCTGAGAAGGGTGCGAGGAAGCATCCACGGGGTGATAACATACAGATAGATACGAAAGATATCCTTTTTATTTGTGGTGGAGCATTTGTAGATCTTGAAAAAACCATTTCAGAGAGACGACAAGATTCTTCTATTGGTTTTGGTGCTCCTGTCCGTGCCAACATGAGAGCTGGTGGTGTAACCAACGCAATACTGACATCATCTTTACTTGAATCGGTTGAAAGTGCTGATCTCATTGCATATGGACTCATACCAGAGTTTATTGGACGTTTTGCAATATTAGTTAGTTTATCTGCTTTAACTGAAGACCAACTTGTTCAGGTACTGACGGAACCAAAAAATGCCCTTGGTAAGCAGTACAAGAAACTATTTAGCATGAACAATGTGAAGCTGCATTTCACGGACAAAGCACTAAGACTCATGGCAAAGAAAGCGATGGCTAAGAATACCGGTGCCAGGGGATTAAGATCGATATTGGAAAGTATTCTAACCGAAGCCATGTATGAGATTCCGGATGTTAAAACAGGAGAAGATAGAGTAGATGCTGTAGTGGTTGATGAGGAGTCTGTGGATTCAGGAAATGCCCCTGGATGTGGAGGGAAGATTATTCGAGGGGACGGTGCATTGGAAAGATACCTTCGTGAAATAAAGTTGAAAGAATCAGTGGAGTATGTCGAGGTAGCTGAGGGGGAGTCGGAGGGAGAATCAGAACATTCCAGGGCTATGAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

672

Amino Acids

73.23

Weight (kDa)

8.68

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	317 - 521	2.8e-30	AAA domain (Cdc48 subfamily)
AAA	PF00004	321 - 427	1.3e-15	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	528 - 597	2.5e-10	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021623)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000082.1_g000051 Rmu_sc0002809.1_g000017
rosa_rugosa	Rorug05G0498900 Rorug06G0000500 Rorug06G0000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	849
AarI	CACCTGC	1 cut(s)	96
Acc36I	ACCTGC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	1736
AccII	CGCG	3 cut(s)	151, 226, 687
AccIII	TCCGGA	1 cut(s)	1795
AclI	AACGTT	1 cut(s)	1281
AclWI	GGATC	2 cut(s)	171, 991
AcoI	YGGCCR	1 cut(s)	808
AcsI	RAATTY	2 cut(s)	864, 1057
AcuI	CTGAAG	2 cut(s)	317, 1608
AcyI	GRCGYC	1 cut(s)	584
AdeI	CACNNNGTG	1 cut(s)	1316
AfaI	GTAC	3 cut(s)	1137, 1608, 1643
AfiI	CCNNNNNNNGG	6 cut(s)	410, 620, 626, 1292, 1740, 1877
AgeI	ACCGGT	1 cut(s)	1733
AgsI	TTSAA	7 cut(s)	100, 238, 1132, 1382, 1496, 1505, 1939
AjnI	CCWGG	8 cut(s)	393, 595, 619, 667, 731, 1739, 1870, 2000
AleI	CACNNNNGTG	1 cut(s)	419
AloI	GAACNNNNNNTCC	2 cut(s)	1221, 1253
Alw21I	GWGCWC	2 cut(s)	966, 1432
Alw26I	GTCTC	3 cut(s)	135, 711, 1393
AlwI	GGATC	2 cut(s)	171, 991
AlwNI	CAGNNNCTG	2 cut(s)	713, 1609
Ama87I	CYCGRG	1 cut(s)	649
Aor13HI	TCCGGA	1 cut(s)	1795
AoxI	GGCC	7 cut(s)	213, 309, 342, 605, 652, 808, 973
ApaI	GGGCCC	2 cut(s)	656, 977
ApeKI	GCWGC	5 cut(s)	228, 896, 1121, 1142, 1675
ApoI	RAATTY	2 cut(s)	864, 1057
AsiGI	ACCGGT	1 cut(s)	1733
Asp700I	GAANNNNTTC	1 cut(s)	1767
AspLEI	GCGC	4 cut(s)	151, 153, 228, 689
AspS9I	GGNCC	6 cut(s)	247, 343, 652, 653, 973, 974
AsuC2I	CCSGG	2 cut(s)	650, 651
AsuHPI	GGTGA	3 cut(s)	383, 430, 1328
AvaI	CYCGRG	1 cut(s)	649
AvaII	GGWCC	1 cut(s)	247
AxyI	CCTNAGG	1 cut(s)	771
BaeGI	GKGCMC	2 cut(s)	656, 977
BaeI	ACNNNNGTAYC	4 cut(s)	51, 84, 1909, 1942
BalI	TGGCCA	1 cut(s)	810
BanI	GGYRCC	1 cut(s)	1736
BanII	GRGCYC	2 cut(s)	656, 977
BbsI	GAAGAC	3 cut(s)	731, 998, 1596
Bbv12I	GWGCWC	2 cut(s)	966, 1432
BbvCI	CCTCAGC	2 cut(s)	609, 1968
BbvI	GCAGC	5 cut(s)	215, 908, 1133, 1154, 1662
BccI	CCATC	5 cut(s)	12, 120, 294, 964, 1714
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	8 cut(s)	395, 597, 621, 669, 733, 1741, 1872, 2002
BciVI	GTATCC	1 cut(s)	79
BcnI	CCSGG	2 cut(s)	650, 651
BcoDI	GTCTC	3 cut(s)	135, 711, 1393
BfaI	CTAG	3 cut(s)	108, 947, 1013
BfmI	CTRYAG	3 cut(s)	837, 1272, 1830
BfuAI	ACCTGC	1 cut(s)	96
BfuI	GTATCC	1 cut(s)	79
BglII	AGATCT	2 cut(s)	777, 1375
BisI	GCNGC	9 cut(s)	172, 229, 268, 739, 897, 1119, 1122, 1143, 1676
BlsI	GCNGC	9 cut(s)	173, 230, 269, 740, 898, 1120, 1123, 1144, 1677
Bme18I	GGWCC	1 cut(s)	247
BmeT110I	CYCGRG	1 cut(s)	649
BmgT120I	GGNCC	6 cut(s)	247, 343, 652, 653, 973, 974
BmiI	GGNNCC	8 cut(s)	175, 496, 591, 654, 742, 975, 1617, 1738
BmsI	GCATC	8 cut(s)	172, 548, 688, 694, 700, 1039, 1315, 1816
BpiI	GAAGAC	3 cut(s)	731, 998, 1596
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BpmI	CTGGAG	4 cut(s)	690, 714, 735, 1248
Bpu10I	CCTNAGC	2 cut(s)	609, 1968
BpuEI	CTTGAG	1 cut(s)	48
BpuMI	CCSGG	2 cut(s)	650, 651
Bsa29I	ATCGAT	1 cut(s)	1754
BsaBI	GATNNNNATC	1 cut(s)	1750
BsaHI	GRCGYC	1 cut(s)	584
BsaWI	WCCGGW	2 cut(s)	1733, 1795
BsaXI	ACNNNNNCTCC	8 cut(s)	158, 188, 663, 693, 1221, 1251, 1356, 1386
Bsc4I	CCNNNNNNNGG	6 cut(s)	410, 620, 626, 1292, 1740, 1877
Bse118I	RCCGGY	2 cut(s)	298, 1733
Bse1I	ACTGG	3 cut(s)	489, 697, 985
Bse21I	CCTNAGG	1 cut(s)	771
Bse3DI	GCAATG	3 cut(s)	631, 964, 1518
Bse8I	GATNNNNATC	1 cut(s)	1750
BseAI	TCCGGA	1 cut(s)	1795
BseBI	CCWGG	8 cut(s)	395, 597, 621, 669, 733, 1741, 1872, 2002
BseCI	ATCGAT	1 cut(s)	1754
BseGI	GGATG	5 cut(s)	286, 539, 1306, 1804, 1880
BseJI	GATNNNNATC	1 cut(s)	1750
BseLI	CCNNNNNNNGG	6 cut(s)	410, 620, 626, 1292, 1740, 1877
BseMI	GCAATG	3 cut(s)	631, 964, 1518
BseMII	CTCAG	7 cut(s)	318, 524, 548, 623, 1188, 1278, 1959
BseNI	ACTGG	3 cut(s)	489, 697, 985
BsePI	GCGCGC	1 cut(s)	149
BseRI	GAGGAG	3 cut(s)	282, 320, 1859
BseSI	GKGCMC	2 cut(s)	656, 977
BseXI	GCAGC	5 cut(s)	215, 908, 1133, 1154, 1662
BsgI	GTGCAG	2 cut(s)	74, 164
Bsh1236I	CGCG	3 cut(s)	151, 226, 687
Bsh1285I	CGRYCG	1 cut(s)	265
BshFI	GGCC	7 cut(s)	215, 311, 344, 607, 654, 810, 975
BshNI	GGYRCC	1 cut(s)	1736
BshTI	ACCGGT	1 cut(s)	1733
BshVI	ATCGAT	1 cut(s)	1754
BsiEI	CGRYCG	1 cut(s)	265
BsiHKAI	GWGCWC	2 cut(s)	966, 1432
BsiHKCI	CYCGRG	1 cut(s)	649
BsiSI	CCGG	7 cut(s)	6, 177, 299, 312, 650, 1734, 1796
BslFI	GGGAC	2 cut(s)	563, 1913
BslI	CCNNNNNNNGG	6 cut(s)	410, 620, 626, 1292, 1740, 1877
BsmAI	GTCTC	3 cut(s)	135, 711, 1393
BsmBI	CGTCTC	1 cut(s)	1393
BsmFI	GGGAC	2 cut(s)	563, 1913
BsnI	GGCC	7 cut(s)	215, 311, 344, 607, 654, 810, 975
BsoBI	CYCGRG	1 cut(s)	649
Bsp120I	GGGCCC	2 cut(s)	652, 973
Bsp1286I	GDGCHC	4 cut(s)	656, 966, 977, 1432
Bsp13I	TCCGGA	1 cut(s)	1795
Bsp1407I	TGTACA	1 cut(s)	1135
Bsp143I	GATC	8 cut(s)	163, 262, 560, 777, 983, 1375, 1513, 1751
BspANI	GGCC	7 cut(s)	215, 311, 344, 607, 654, 810, 975
BspCNI	CTCAG	7 cut(s)	319, 525, 549, 622, 1189, 1279, 1960
BspDI	ATCGAT	1 cut(s)	1754
BspEI	TCCGGA	1 cut(s)	1795
BspFNI	CGCG	3 cut(s)	151, 226, 687
BspLI	GGNNCC	8 cut(s)	175, 496, 591, 654, 742, 975, 1617, 1738
BspMI	ACCTGC	1 cut(s)	96
BspPI	GGATC	2 cut(s)	171, 991
BspT107I	GGYRCC	1 cut(s)	1736
BsrDI	GCAATG	3 cut(s)	631, 964, 1518
BsrFI	RCCGGY	2 cut(s)	298, 1733
BsrGI	TGTACA	1 cut(s)	1135
BsrI	ACTGG	3 cut(s)	489, 697, 985
BssAI	RCCGGY	2 cut(s)	298, 1733
BssHII	GCGCGC	1 cut(s)	149
BssMI	GATC	8 cut(s)	163, 262, 560, 777, 983, 1375, 1513, 1751
BssNI	GRCGYC	1 cut(s)	584
BssT1I	CCWWGG	2 cut(s)	409, 1630
Bst2UI	CCWGG	8 cut(s)	395, 597, 621, 669, 733, 1741, 1872, 2002
Bst4CI	ACNGT	2 cut(s)	242, 1904
Bst6I	CTCTTC	2 cut(s)	118, 463
BstACI	GRCGYC	1 cut(s)	584
BstAUI	TGTACA	1 cut(s)	1135
BstC8I	GCNNGC	7 cut(s)	147, 151, 187, 224, 300, 1002, 1245
BstDSI	CCRYGG	1 cut(s)	1310
BstF5I	GGATG	5 cut(s)	286, 539, 1306, 1804, 1880
BstFNI	CGCG	3 cut(s)	151, 226, 687
BstHHI	GCGC	4 cut(s)	151, 153, 228, 689
BstKTI	GATC	8 cut(s)	166, 265, 563, 780, 986, 1378, 1516, 1754
BstMAI	GTCTC	3 cut(s)	135, 711, 1393
BstMBI	GATC	8 cut(s)	163, 262, 560, 777, 983, 1375, 1513, 1751
BstMCI	CGRYCG	1 cut(s)	265
BstMWI	GCNNNNNNNGC	9 cut(s)	52, 117, 177, 186, 228, 308, 363, 581, 1715
BstNI	CCWGG	8 cut(s)	395, 597, 621, 669, 733, 1741, 1872, 2002
BstNSI	RCATGY	2 cut(s)	13, 2017
BstSFI	CTRYAG	3 cut(s)	837, 1272, 1830
BstSLI	GKGCMC	2 cut(s)	656, 977
BstUI	CGCG	3 cut(s)	151, 226, 687
BstV1I	GCAGC	5 cut(s)	215, 908, 1133, 1154, 1662
BstV2I	GAAGAC	3 cut(s)	731, 998, 1596
BstX2I	RGATCY	3 cut(s)	777, 983, 1375
BstYI	RGATCY	3 cut(s)	777, 983, 1375
Bsu15I	ATCGAT	1 cut(s)	1754
Bsu36I	CCTNAGG	1 cut(s)	771
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	7 cut(s)	215, 311, 344, 607, 654, 810, 975
BsuTUI	ATCGAT	1 cut(s)	1754
BtgI	CCRYGG	1 cut(s)	1310
BtgZI	GCGATG	3 cut(s)	101, 195, 1733
BtsCI	GGATG	5 cut(s)	286, 539, 1306, 1804, 1880
BtsIMutI	CAGTG	2 cut(s)	496, 1953
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	7 cut(s)	147, 151, 187, 224, 300, 1002, 1245
CaiI	CAGNNNCTG	2 cut(s)	713, 1609
CfoI	GCGC	4 cut(s)	151, 153, 228, 689
Cfr10I	RCCGGY	2 cut(s)	298, 1733
Cfr13I	GGNCC	6 cut(s)	247, 343, 652, 653, 973, 974
Cfr9I	CCCGGG	1 cut(s)	649
ClaI	ATCGAT	1 cut(s)	1754
CseI	GACGC	1 cut(s)	573
CsiI	ACCWGGT	1 cut(s)	393
Csp6I	GTAC	3 cut(s)	1136, 1607, 1642
CspAI	ACCGGT	1 cut(s)	1733
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	7 cut(s)	10, 872, 1447, 1660, 1705, 1783, 2014
CviQI	GTAC	3 cut(s)	1136, 1607, 1642
DpnI	GATC	8 cut(s)	165, 264, 562, 779, 985, 1377, 1515, 1753
DpnII	GATC	8 cut(s)	163, 262, 560, 777, 983, 1375, 1513, 1751
DraI	TTTAAA	1 cut(s)	1206
DraIII	CACNNNGTG	1 cut(s)	1316
EaeI	YGGCCR	1 cut(s)	808
Eam1104I	CTCTTC	2 cut(s)	118, 463
EarI	CTCTTC	2 cut(s)	118, 463
EciI	GGCGGA	2 cut(s)	285, 317
Eco130I	CCWWGG	2 cut(s)	409, 1630
Eco24I	GRGCYC	2 cut(s)	656, 977
Eco32I	GATATC	1 cut(s)	1345
Eco47I	GGWCC	1 cut(s)	247
Eco57I	CTGAAG	2 cut(s)	317, 1608
Eco81I	CCTNAGG	1 cut(s)	771
Eco88I	CYCGRG	1 cut(s)	649
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRII	CCWGG	8 cut(s)	393, 595, 619, 667, 731, 1739, 1870, 2000
EcoRV	GATATC	1 cut(s)	1345
EcoT14I	CCWWGG	2 cut(s)	409, 1630
EcoT38I	GRGCYC	2 cut(s)	656, 977
ErhI	CCWWGG	2 cut(s)	409, 1630
Esp3I	CGTCTC	1 cut(s)	1393
FaeI	CATG	7 cut(s)	13, 875, 1450, 1663, 1708, 1786, 2017
FalI	AAGNNNNNCTT	4 cut(s)	1332, 1364, 1581, 1613
FaqI	GGGAC	2 cut(s)	563, 1913
FatI	CATG	7 cut(s)	9, 871, 1446, 1659, 1704, 1782, 2013
FauI	CCCGC	1 cut(s)	231
FauNDI	CATATG	2 cut(s)	565, 1525
Fnu4HI	GCNGC	9 cut(s)	172, 229, 268, 739, 897, 1119, 1122, 1143, 1676
FokI	GGATG	5 cut(s)	273, 526, 1293, 1811, 1887
FriOI	GRGCYC	2 cut(s)	656, 977
Fsp4HI	GCNGC	9 cut(s)	172, 229, 268, 739, 897, 1119, 1122, 1143, 1676
FspBI	CTAG	3 cut(s)	108, 947, 1013
GlaI	GCGC	4 cut(s)	150, 152, 227, 688
GluI	GCNGC	9 cut(s)	172, 229, 268, 739, 897, 1119, 1122, 1143, 1676
GsuI	CTGGAG	4 cut(s)	690, 714, 735, 1248
HaeIII	GGCC	7 cut(s)	215, 311, 344, 607, 654, 810, 975
HapII	CCGG	7 cut(s)	6, 177, 299, 312, 650, 1734, 1796
HgaI	GACGC	1 cut(s)	573
HhaI	GCGC	4 cut(s)	151, 153, 228, 689
Hin1I	GRCGYC	1 cut(s)	584
Hin1II	CATG	7 cut(s)	13, 875, 1450, 1663, 1708, 1786, 2017
Hin6I	GCGC	4 cut(s)	149, 151, 226, 687
HinP1I	GCGC	4 cut(s)	149, 151, 226, 687
HincII	GTYRAC	1 cut(s)	1177
HindII	GTYRAC	1 cut(s)	1177
HpaII	CCGG	7 cut(s)	6, 177, 299, 312, 650, 1734, 1796
HphI	GGTGA	3 cut(s)	383, 430, 1328
Hpy166II	GTNNAC	4 cut(s)	60, 1162, 1177, 1279
Hpy188III	TCNNGA	9 cut(s)	791, 906, 967, 1227, 1286, 1379, 1796, 1860, 1925
Hpy8I	GTNNAC	4 cut(s)	60, 1162, 1177, 1279
Hpy99I	CGWCG	2 cut(s)	521, 589
HpyAV	CCTTC	6 cut(s)	244, 553, 1186, 1259, 1285, 1931
HpyCH4III	ACNGT	2 cut(s)	242, 1904
HpyCH4IV	ACGT	3 cut(s)	995, 1281, 1552
HpyF10VI	GCNNNNNNNGC	9 cut(s)	52, 117, 177, 186, 228, 308, 363, 581, 1715
HpySE526I	ACGT	3 cut(s)	995, 1281, 1552
Hsp92I	GRCGYC	1 cut(s)	584
Hsp92II	CATG	7 cut(s)	13, 875, 1450, 1663, 1708, 1786, 2017
HspAI	GCGC	4 cut(s)	149, 151, 226, 687
Kpn2I	TCCGGA	1 cut(s)	1795
KroI	GCCGGC	1 cut(s)	298
KroNI	GCCGGC	1 cut(s)	300
Kzo9I	GATC	8 cut(s)	163, 262, 560, 777, 983, 1375, 1513, 1751
LmnI	GCTCC	8 cut(s)	51, 179, 236, 406, 589, 746, 1364, 1435
Lsp1109I	GCAGC	5 cut(s)	215, 908, 1133, 1154, 1662
LweI	GCATC	8 cut(s)	172, 548, 688, 694, 700, 1039, 1315, 1816
MabI	ACCWGGT	1 cut(s)	393
MaeI	CTAG	3 cut(s)	108, 947, 1013
MaeII	ACGT	3 cut(s)	995, 1281, 1552
MaeIII	GTNAC	2 cut(s)	467, 1462
MalI	GATC	8 cut(s)	165, 264, 562, 779, 985, 1377, 1515, 1753
MboI	GATC	8 cut(s)	163, 262, 560, 777, 983, 1375, 1513, 1751
MfeI	CAATTG	2 cut(s)	361, 601
MflI	RGATCY	3 cut(s)	777, 983, 1375
MhlI	GDGCHC	4 cut(s)	656, 966, 977, 1432
MlsI	TGGCCA	1 cut(s)	810
MluCI	AATT	5 cut(s)	361, 601, 745, 864, 1057
MluNI	TGGCCA	1 cut(s)	810
MlyI	GAGTC	5 cut(s)	137, 1524, 1695, 1856, 1985
MmeI	TCCRAC	3 cut(s)	409, 567, 1959
Mox20I	TGGCCA	1 cut(s)	810
MreI	CGCCGGCG	1 cut(s)	298
MroI	TCCGGA	1 cut(s)	1795
MroNI	GCCGGC	1 cut(s)	298
MroXI	GAANNNNTTC	1 cut(s)	1767
MscI	TGGCCA	1 cut(s)	810
MseI	TTAA	6 cut(s)	675, 1061, 1205, 1583, 1748, 1803
MslI	CAYNNNNRTG	2 cut(s)	140, 419
Msp20I	TGGCCA	1 cut(s)	810
MspA1I	CMGCKG	2 cut(s)	55, 1124
MspI	CCGG	7 cut(s)	6, 177, 299, 312, 650, 1734, 1796
MssI	GTTTAAAC	1 cut(s)	1206
MunI	CAATTG	2 cut(s)	361, 601
MvaI	CCWGG	8 cut(s)	395, 597, 621, 669, 733, 1741, 1872, 2002
MvnI	CGCG	3 cut(s)	151, 226, 687
MwoI	GCNNNNNNNGC	9 cut(s)	52, 117, 177, 186, 228, 308, 363, 581, 1715
NaeI	GCCGGC	1 cut(s)	300
NciI	CCSGG	2 cut(s)	650, 651
NdeI	CATATG	2 cut(s)	565, 1525
NdeII	GATC	8 cut(s)	163, 262, 560, 777, 983, 1375, 1513, 1751
NgoMIV	GCCGGC	1 cut(s)	298
NlaIII	CATG	7 cut(s)	13, 875, 1450, 1663, 1708, 1786, 2017
NlaIV	GGNNCC	8 cut(s)	175, 496, 591, 654, 742, 975, 1617, 1738
NspI	RCATGY	2 cut(s)	13, 2017
OliI	CACNNNNGTG	1 cut(s)	419
PaqCI	CACCTGC	1 cut(s)	96
PauI	GCGCGC	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	193
PdiI	GCCGGC	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	1767
PfeI	GAWTC	8 cut(s)	902, 1094, 1409, 1496, 1792, 1856, 1943, 1988
PinAI	ACCGGT	1 cut(s)	1733
PkrI	GCNGC	9 cut(s)	173, 230, 269, 740, 898, 1120, 1123, 1144, 1677
Ple19I	CGATCG	1 cut(s)	265
PleI	GAGTC	5 cut(s)	136, 1524, 1695, 1855, 1984
PmeI	GTTTAAAC	1 cut(s)	1206
PpsI	GAGTC	5 cut(s)	136, 1524, 1695, 1855, 1984
PsiI	TTATAA	1 cut(s)	849
Psp1406I	AACGTT	1 cut(s)	1281
Psp6I	CCWGG	8 cut(s)	393, 595, 619, 667, 731, 1739, 1870, 2000
PspGI	CCWGG	8 cut(s)	393, 595, 619, 667, 731, 1739, 1870, 2000
PspN4I	GGNNCC	8 cut(s)	175, 496, 591, 654, 742, 975, 1617, 1738
PspOMI	GGGCCC	2 cut(s)	652, 973
PspPI	GGNCC	6 cut(s)	247, 343, 652, 653, 973, 974
PstNI	CAGNNNCTG	2 cut(s)	713, 1609
PsuI	RGATCY	3 cut(s)	777, 983, 1375
PteI	GCGCGC	1 cut(s)	149
PvuI	CGATCG	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	1124
RsaI	GTAC	3 cut(s)	1137, 1608, 1643
RsaNI	GTAC	3 cut(s)	1136, 1607, 1642
RseI	CAYNNNNRTG	2 cut(s)	140, 419
SaqAI	TTAA	6 cut(s)	675, 1061, 1205, 1583, 1748, 1803
SatI	GCNGC	9 cut(s)	172, 229, 268, 739, 897, 1119, 1122, 1143, 1676
Sau3AI	GATC	8 cut(s)	163, 262, 560, 777, 983, 1375, 1513, 1751
Sau96I	GGNCC	6 cut(s)	247, 343, 652, 653, 973, 974
SchI	GAGTC	5 cut(s)	137, 1524, 1695, 1856, 1985
SduI	GDGCHC	4 cut(s)	656, 966, 977, 1432
SexAI	ACCWGGT	1 cut(s)	393
SfaNI	GCATC	8 cut(s)	172, 548, 688, 694, 700, 1039, 1315, 1816
SfcI	CTRYAG	3 cut(s)	837, 1272, 1830
SgrAI	CRCCGGYG	1 cut(s)	298
SinI	GGWCC	1 cut(s)	247
SmaI	CCCGGG	1 cut(s)	651
SmiMI	CAYNNNNRTG	2 cut(s)	140, 419
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	5 cut(s)	361, 601, 745, 864, 1057
SspI	AATATT	2 cut(s)	1101, 1563
SspMI	CTAG	3 cut(s)	108, 947, 1013
StyI	CCWWGG	2 cut(s)	409, 1630
TaaI	ACNGT	2 cut(s)	242, 1904
TaiI	ACGT	3 cut(s)	998, 1284, 1555
TaqI	TCGA	6 cut(s)	1018, 1092, 1263, 1754, 1894, 1959
TasI	AATT	5 cut(s)	361, 601, 745, 864, 1057
TatI	WGTACW	2 cut(s)	1135, 1641
TauI	GCSGC	4 cut(s)	174, 270, 741, 1121
TfiI	GAWTC	8 cut(s)	902, 1094, 1409, 1496, 1792, 1856, 1943, 1988
Tru1I	TTAA	6 cut(s)	675, 1061, 1205, 1583, 1748, 1803
Tru9I	TTAA	6 cut(s)	675, 1061, 1205, 1583, 1748, 1803
TscAI	CASTG	2 cut(s)	496, 1953
TseI	GCWGC	5 cut(s)	228, 896, 1121, 1142, 1675
TspDTI	ATGAA	2 cut(s)	1185, 1676
TspGWI	ACGGA	3 cut(s)	1427, 1628, 1700
TspMI	CCCGGG	1 cut(s)	649
TspRI	CASTG	2 cut(s)	496, 1953
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	2 cut(s)	864, 1057
XceI	RCATGY	2 cut(s)	13, 2017
XcmI	CCANNNNNNNNNTGG	1 cut(s)	600
XmaI	CCCGGG	1 cut(s)	649
XmnI	GAANNNNTTC	1 cut(s)	1767
XspI	CTAG	3 cut(s)	108, 947, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.