Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000098.1

Orthogroup ID

OG0010872

Physical Location & Seq

Genomic Coordinates Reverse (-)

60367 .. 62112

Gene Structure 1746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000098.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atggtttgtgttttgttgatggtttgctatgttgtaaattttgattttgtatcgagctcttgtcaaaatgatcaatggttgggctgccaggtggatgccaagcttattgatttcagagaaagtgcaattgcagacaagtctttcttggatgggcacgtttcttctatggatggtatttccacagatgcaaaaagaaaatggatggaattttctatgcaagcagagaatgatgctaaggatggtgttgattactctgctgcgaaacattgccgcatggaggtacttctgcagcaatgtgtaagtactgccgattcagcttcgaagcactggaaaaagacgcaggactctgtgaatgatatgggaaataaacatgtttcagctatggggtcactcatcaggaatgcttatgatagtaatgagcaacatgatgtggaaatcaattcagtgaggactgcagttgagaaagatgtggcaaaggatagtgaggatgcccttcagcatgtagaaagtatggatgagcaggagcgggaatctatatctggaatcttggaggttgtcaaggctcaatcaaccacccttgagactttccgggaggatcactgtggccaagctgcatctattgaagagagggcgcgggatacctttcagaaccagtatatggattatgaaccgtgtggttctacaccagaaaaggccgaaccagaagttccaaccaagggaacaatcgagtcactacgagccatgccaatggaagctcttgttgaggaatttcgggaaaacaattcatatgactcatttgatgtgaaggagctgaaaccatctcttataccgcgctcgccacttacactactcaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

285

Amino Acids

32.0

Weight (kDa)

4.62

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36200 AT2G36200
fragaria_vesca	FvH4_6g19220
malus_domestica	MD12G1028000.v1.1 MD14G1028400.v1.1
prunus_persica	Prupe.7G103600_v2.0.a1 Prupe.7G103600_v2.0.a1
pyrus_communis	pycom12g02680 pycom14g02650
rosa_chinensis	RchiOBHm_Chr3g0474331
rosa_laevigata	RLG00000023932
rosa_multiflora	Rmu_sc0000098.1_g000007 Rmu_sc0004507.1_g000011
rosa_roxburghii	Rroxscaffold_6G00407340
rosa_rugosa	Rorug03G0140100
rosa_samantha	Rh3AG190900 Rh3BG220100 Rh3CG215300 Rh3DG215800
rosa_wichuraiana	Rw3G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	658
AccBSI	CCGCTC	1 cut(s)	526
AccII	CGCG	2 cut(s)	634, 832
AciI	CCGC	4 cut(s)	271, 526, 634, 830
AclWI	GGATC	1 cut(s)	603
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	3 cut(s)	37, 206, 767
AcuI	CTGAAG	1 cut(s)	479
AfaI	GTAC	2 cut(s)	282, 304
AfiI	CCNNNNNNNGG	3 cut(s)	277, 658, 716
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	1 cut(s)	623
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	7 cut(s)	57, 103, 317, 380, 611, 755, 811
AluI	AGCT	7 cut(s)	57, 103, 317, 380, 611, 755, 811
Alw21I	GWGCWC	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	575
AlwI	GGATC	1 cut(s)	603
AoxI	GGCC	2 cut(s)	604, 693
ApeKI	GCWGC	4 cut(s)	84, 257, 289, 611
ApoI	RAATTY	3 cut(s)	37, 206, 767
AspLEI	GCGC	2 cut(s)	634, 834
AsuC2I	CCSGG	1 cut(s)	590
AsuII	TTCGAA	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	606
BanII	GRGCYC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	4 cut(s)	71, 244, 301, 598
BccI	CCATC	6 cut(s)	13, 143, 164, 196, 233, 826
BciT130I	CCWGG	1 cut(s)	89
BciVI	GTATCC	1 cut(s)	631
BclI	TGATCA	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	575
BfmI	CTRYAG	2 cut(s)	287, 453
BfuI	GTATCC	1 cut(s)	631
BisI	GCNGC	5 cut(s)	85, 258, 271, 290, 612
BlsI	GCNGC	5 cut(s)	86, 259, 272, 291, 613
BmcAI	AGTACT	1 cut(s)	304
Bme1390I	CCNGG	2 cut(s)	89, 590
BmrFI	CCNGG	2 cut(s)	89, 590
BmsI	GCATC	5 cut(s)	85, 175, 220, 478, 623
Bpu10I	CCTNAGC	1 cut(s)	234
Bpu14I	TTCGAA	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	1 cut(s)	590
BsaJI	CCNNGG	1 cut(s)	714
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 658, 716
Bse1I	ACTGG	2 cut(s)	332, 652
Bse3DI	GCAATG	2 cut(s)	265, 299
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	714
BseGI	GGATG	7 cut(s)	100, 154, 175, 207, 244, 493, 520
BseLI	CCNNNNNNNGG	3 cut(s)	277, 658, 716
BseMI	GCAATG	2 cut(s)	265, 299
BseNI	ACTGG	2 cut(s)	332, 652
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	4 cut(s)	71, 244, 301, 598
Bsh1236I	CGCG	2 cut(s)	634, 832
BshFI	GGCC	2 cut(s)	606, 695
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	589
BslI	CCNNNNNNNGG	3 cut(s)	277, 658, 716
BsmAI	GTCTC	1 cut(s)	575
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	2 cut(s)	606, 695
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	59, 156
Bsp143I	GATC	2 cut(s)	70, 595
BspACI	CCGC	4 cut(s)	271, 526, 634, 830
BspANI	GGCC	2 cut(s)	606, 695
BspFNI	CGCG	2 cut(s)	634, 832
BspMAI	CTGCAG	2 cut(s)	291, 457
BspPI	GGATC	1 cut(s)	603
BspT104I	TTCGAA	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	526
BsrDI	GCAATG	2 cut(s)	265, 299
BsrI	ACTGG	2 cut(s)	332, 652
BssECI	CCNNGG	1 cut(s)	714
BssMI	GATC	2 cut(s)	70, 595
BssT1I	CCWWGG	1 cut(s)	714
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	602, 672
Bst6I	CTCTTC	1 cut(s)	618
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	219, 836
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	7 cut(s)	100, 154, 175, 207, 244, 493, 520
BstFNI	CGCG	2 cut(s)	634, 832
BstHHI	GCGC	2 cut(s)	634, 834
BstKTI	GATC	2 cut(s)	73, 598
BstMAI	GTCTC	1 cut(s)	575
BstMBI	GATC	2 cut(s)	70, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	2 cut(s)	374, 503
BstSCI	CCNGG	2 cut(s)	87, 588
BstSFI	CTRYAG	2 cut(s)	287, 453
BstSLI	GKGCMC	1 cut(s)	156
BstUI	CGCG	2 cut(s)	634, 832
BstV1I	GCAGC	4 cut(s)	71, 244, 301, 598
BstXI	CCANNNNNNTGG	1 cut(s)	748
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	2 cut(s)	606, 695
BtsCI	GGATG	7 cut(s)	100, 154, 175, 207, 244, 493, 520
BtsIMutI	CAGTG	3 cut(s)	325, 450, 598
Cac8I	GCNNGC	2 cut(s)	219, 836
CfoI	GCGC	2 cut(s)	634, 834
CseI	GACGC	1 cut(s)	346
Csp6I	GTAC	2 cut(s)	281, 303
CviAII	CATG	5 cut(s)	274, 371, 425, 500, 742
CviQI	GTAC	2 cut(s)	281, 303
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	2 cut(s)	72, 597
DpnII	GATC	2 cut(s)	70, 595
EaeI	YGGCCR	1 cut(s)	604
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Ecl136II	GAGCTC	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	714
Eco24I	GRGCYC	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	479
EcoICRI	GAGCTC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	714
EcoT38I	GRGCYC	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	714
FaeI	CATG	5 cut(s)	277, 374, 428, 503, 745
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FatI	CATG	5 cut(s)	273, 370, 424, 499, 741
FauI	CCCGC	2 cut(s)	519, 627
FauNDI	CATATG	1 cut(s)	787
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	5 cut(s)	85, 258, 271, 290, 612
FokI	GGATG	7 cut(s)	107, 161, 182, 214, 251, 500, 527
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	5 cut(s)	85, 258, 271, 290, 612
GlaI	GCGC	2 cut(s)	633, 833
GluI	GCNGC	5 cut(s)	85, 258, 271, 290, 612
HaeIII	GGCC	2 cut(s)	606, 695
HapII	CCGG	1 cut(s)	589
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	2 cut(s)	634, 834
Hin1II	CATG	5 cut(s)	277, 374, 428, 503, 745
Hin6I	GCGC	2 cut(s)	632, 832
HinP1I	GCGC	2 cut(s)	632, 832
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	6 cut(s)	311, 344, 530, 543, 728, 791
HpaII	CCGG	1 cut(s)	589
Hpy188I	TCNGA	2 cut(s)	116, 648
Hpy188III	TCNNGA	3 cut(s)	397, 540, 773
HpyAV	CCTTC	2 cut(s)	503, 799
HpyCH4III	ACNGT	2 cut(s)	602, 672
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	7 cut(s)	125, 131, 188, 217, 289, 455, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	5 cut(s)	277, 374, 428, 503, 745
HspAI	GCGC	2 cut(s)	632, 832
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	70, 595
LmnI	GCTCC	2 cut(s)	523, 808
Lsp1109I	GCAGC	4 cut(s)	71, 244, 301, 598
LweI	GCATC	5 cut(s)	85, 175, 220, 478, 623
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	387, 729
MalI	GATC	2 cut(s)	72, 597
MbiI	CCGCTC	1 cut(s)	526
MboI	GATC	2 cut(s)	70, 595
MboII	GAAGA	2 cut(s)	153, 635
MfeI	CAATTG	1 cut(s)	126
MhlI	GDGCHC	2 cut(s)	59, 156
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	6 cut(s)	37, 126, 206, 439, 767, 781
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	3 cut(s)	338, 737, 785
MmeI	TCCRAC	1 cut(s)	734
MnlI	CCTC	7 cut(s)	271, 441, 478, 544, 586, 621, 757
Mox20I	TGGCCA	1 cut(s)	606
MscI	TGGCCA	1 cut(s)	606
MslI	CAYNNNNRTG	1 cut(s)	746
Msp20I	TGGCCA	1 cut(s)	606
MspI	CCGG	1 cut(s)	589
MspR9I	CCNGG	2 cut(s)	89, 590
MunI	CAATTG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	2 cut(s)	634, 832
MwoI	GCNNNNNNNGC	1 cut(s)	314
NciI	CCSGG	1 cut(s)	590
NdeI	CATATG	1 cut(s)	787
NdeII	GATC	2 cut(s)	70, 595
NlaIII	CATG	5 cut(s)	277, 374, 428, 503, 745
NmuCI	GTSAC	2 cut(s)	387, 729
NspI	RCATGY	2 cut(s)	374, 503
NspV	TTCGAA	1 cut(s)	320
PciI	ACATGT	1 cut(s)	370
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	3 cut(s)	311, 530, 543
PflMI	CCANNNNNTGG	1 cut(s)	658
PfoI	TCCNGGA	1 cut(s)	588
PkrI	GCNGC	5 cut(s)	86, 259, 272, 291, 613
PleI	GAGTC	3 cut(s)	338, 736, 785
PpsI	GAGTC	3 cut(s)	338, 736, 785
PscI	ACATGT	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PstI	CTGCAG	2 cut(s)	291, 457
RsaI	GTAC	2 cut(s)	282, 304
RsaNI	GTAC	2 cut(s)	281, 303
RseI	CAYNNNNRTG	1 cut(s)	746
SacI	GAGCTC	1 cut(s)	59
SatI	GCNGC	5 cut(s)	85, 258, 271, 290, 612
Sau3AI	GATC	2 cut(s)	70, 595
ScaI	AGTACT	1 cut(s)	304
SchI	GAGTC	3 cut(s)	338, 737, 785
ScrFI	CCNGG	2 cut(s)	89, 590
SduI	GDGCHC	2 cut(s)	59, 156
SfaNI	GCATC	5 cut(s)	85, 175, 220, 478, 623
SfcI	CTRYAG	2 cut(s)	287, 453
SfuI	TTCGAA	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	746
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	6 cut(s)	37, 126, 206, 439, 767, 781
SsiI	CCGC	4 cut(s)	271, 526, 634, 830
SstI	GAGCTC	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	87, 588
StyI	CCWWGG	1 cut(s)	714
TaaI	ACNGT	2 cut(s)	602, 672
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	3 cut(s)	53, 320, 726
TasI	AATT	6 cut(s)	37, 126, 206, 439, 767, 781
TatI	WGTACW	1 cut(s)	302
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	3 cut(s)	311, 530, 543
TscAI	CASTG	3 cut(s)	332, 450, 605
TseFI	GTSAC	2 cut(s)	387, 729
TseI	GCWGC	4 cut(s)	84, 257, 289, 611
Tsp45I	GTSAC	2 cut(s)	387, 729
TspDTI	ATGAA	2 cut(s)	681, 774
TspRI	CASTG	3 cut(s)	332, 450, 605
Van91I	CCANNNNNTGG	1 cut(s)	658
XapI	RAATTY	3 cut(s)	37, 206, 767
XceI	RCATGY	2 cut(s)	374, 503
ZrmI	AGTACT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.