Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000101.1

Orthogroup ID

OG0021622

Physical Location & Seq

Genomic Coordinates Reverse (-)

51542 .. 51865

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgctcaagctcctccttcacaacttccaccgtctcagcctccccaattcccccaaattccgatgcgtcttgcatcagattgcccccaacttggccgtctccttctccctcagttccgtcttcacctctgccaacctcatcgccgccgccgccgcctccggctccggctttctccacggcaccgtcacctccaccatcactcaagtcgctgtcactgccgtcaccatcgcttccactaaagttgatttcttgtggcccaaactcgaaagacagctagccccggcgaagcctcgaggtcgtagacgacgactccgacgactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008728 GO:0008893 GO:0009116 GO:0009117 GO:0009119 GO:0009150 GO:0009259 GO:0009605 GO:0009987 GO:0009991 GO:0015969 GO:0016020 GO:0016740 GO:0016772 GO:0016778 GO:0016787 GO:0016788 GO:0016794 GO:0019637 GO:0019693 GO:0030312 GO:0031667 GO:0033865 GO:0033875 GO:0034032 GO:0034035 GO:0034641 GO:0042278 GO:0042578 GO:0042594 GO:0044237 GO:0044238 GO:0044281 GO:0044464 GO:0046128 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:1901068 GO:1901135 GO:1901360 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

HD_4 RelA_SpoT TGS

Protein Analysis

107

Amino Acids

11.72

Weight (kDa)

12.0

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021622)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000063.1_g000034 Rmu_sc0000101.1_g000011
rosa_samantha	Rh7BG456100 Rh7BG456200 Rh7BG456300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	301
AciI	CCGC	4 cut(s)	144, 147, 150, 153
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	91
AluBI	AGCT	2 cut(s)	10, 274
AluI	AGCT	2 cut(s)	10, 274
Alw26I	GTCTC	2 cut(s)	38, 103
Ama87I	CYCGRG	1 cut(s)	291
AoxI	GGCC	2 cut(s)	93, 254
ApoI	RAATTY	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	255
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	3 cut(s)	115, 178, 214
AsuNHI	GCTAGC	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	291
BanI	GGYRCC	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	112
BccI	CCATC	2 cut(s)	203, 233
BceAI	ACGGC	3 cut(s)	80, 193, 203
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	2 cut(s)	38, 103
BfaI	CTAG	1 cut(s)	275
BisI	GCNGC	4 cut(s)	144, 147, 150, 153
BlsI	GCNGC	4 cut(s)	145, 148, 151, 154
Bme1390I	CCNGG	1 cut(s)	281
BmeT110I	CYCGRG	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	2 cut(s)	163, 181
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	2 cut(s)	53, 82
BmtI	GCTAGC	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	175, 279
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	175, 279
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	2 cut(s)	49, 124
BshFI	GGCC	2 cut(s)	95, 256
BshNI	GGYRCC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	159, 165, 281
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	2 cut(s)	38, 103
BsmBI	CGTCTC	2 cut(s)	38, 103
BsnI	GGCC	2 cut(s)	95, 256
BsoBI	CYCGRG	1 cut(s)	291
BspACI	CCGC	4 cut(s)	144, 147, 150, 153
BspANI	GGCC	2 cut(s)	95, 256
BspCNI	CTCAG	2 cut(s)	48, 123
BspLI	GGNNCC	2 cut(s)	163, 181
BspOI	GCTAGC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	175, 279
Bst4CI	ACNGT	2 cut(s)	32, 184
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	2 cut(s)	35, 110
BstDSI	CCRYGG	1 cut(s)	175
BstMAI	GTCTC	2 cut(s)	38, 103
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 152, 215
BstSCI	CCNGG	1 cut(s)	279
BstV2I	GAAGAC	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	95, 256
BtgI	CCRYGG	1 cut(s)	175
BtgZI	GCGATG	2 cut(s)	124, 211
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	255
CseI	GACGC	1 cut(s)	55
CspCI	CAANNNNNGTGG	2 cut(s)	223, 258
CviJI	RGCY	9 cut(s)	10, 39, 95, 162, 168, 256, 274, 278, 289
CviKI_1	RGCY	9 cut(s)	10, 39, 95, 162, 168, 256, 274, 278, 289
DdeI	CTNAG	2 cut(s)	35, 110
EaeI	YGGCCR	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	291
Esp3I	CGTCTC	2 cut(s)	38, 103
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	144, 147, 150, 153
Fsp4HI	GCNGC	4 cut(s)	144, 147, 150, 153
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	4 cut(s)	144, 147, 150, 153
HaeIII	GGCC	2 cut(s)	95, 256
HapII	CCGG	3 cut(s)	159, 165, 281
HgaI	GACGC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	309
HpaII	CCGG	3 cut(s)	159, 165, 281
HphI	GGTGA	3 cut(s)	115, 178, 214
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	3 cut(s)	62, 78, 314
Hpy8I	GTNNAC	1 cut(s)	302
Hpy99I	CGWCG	2 cut(s)	309, 318
HpyAV	CCTTC	2 cut(s)	26, 112
HpyCH4III	ACNGT	2 cut(s)	32, 184
HpyCH4V	TGCA	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 152, 215
HpyF3I	CTNAG	2 cut(s)	35, 110
LmnI	GCTCC	2 cut(s)	15, 167
LpnPI	CCDG	3 cut(s)	172, 178, 294
LweI	GCATC	2 cut(s)	53, 82
MaeI	CTAG	1 cut(s)	275
MaeIII	GTNAC	3 cut(s)	184, 211, 220
MboII	GAAGA	1 cut(s)	112
MluCI	AATT	2 cut(s)	46, 56
MlyI	GAGTC	1 cut(s)	303
MnlI	CCTC	9 cut(s)	23, 50, 119, 136, 146, 166, 199, 287, 300
MspI	CCGG	3 cut(s)	159, 165, 281
MspR9I	CCNGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	3 cut(s)	149, 152, 215
NciI	CCSGG	1 cut(s)	281
NheI	GCTAGC	1 cut(s)	274
NlaIV	GGNNCC	2 cut(s)	163, 181
NmuCI	GTSAC	3 cut(s)	184, 211, 220
PaeR7I	CTCGAG	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	3 cut(s)	304, 310, 313
PkrI	GCNGC	4 cut(s)	145, 148, 151, 154
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	163, 181
PspPI	GGNCC	1 cut(s)	255
PspXI	VCTCGAGB	1 cut(s)	291
SatI	GCNGC	4 cut(s)	144, 147, 150, 153
Sau96I	GGNCC	1 cut(s)	255
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	281
SetI	ASST	6 cut(s)	12, 128, 138, 191, 276, 298
SfaNI	GCATC	2 cut(s)	53, 82
Sfr274I	CTCGAG	1 cut(s)	291
SlaI	CTCGAG	1 cut(s)	291
SmlI	CTYRAG	3 cut(s)	5, 201, 291
SmoI	CTYRAG	3 cut(s)	5, 201, 291
Sse9I	AATT	2 cut(s)	46, 56
SsiI	CCGC	4 cut(s)	144, 147, 150, 153
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	32, 184
TaqI	TCGA	2 cut(s)	264, 292
TasI	AATT	2 cut(s)	46, 56
TauI	GCSGC	4 cut(s)	146, 149, 152, 155
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	3 cut(s)	184, 211, 220
Tsp45I	GTSAC	3 cut(s)	184, 211, 220
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	220
XapI	RAATTY	1 cut(s)	56
XhoI	CTCGAG	1 cut(s)	291
XmiI	GTMKAC	1 cut(s)	301
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.